Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc106.105 Carica papaya HOM05D004852 ORTHO05D006128 6.8e-87 323.9 161 100.0
QL11p033063 Quercus lobata HOM05D004852 ORTHO05D006128 3.6e-27 125.6 157 43.9
Thecc.02G110100 Theobroma cacao HOM05D004852 ORTHO05D006128 6.1e-27 124.8 138 49.3
TWI79G0830 Tripterygium wilfordii HOM05D004852 ORTHO05D006128 1.3e-26 123.6 155 47.1
Potri.009G094400 Populus trichocarpa HOM05D004852 ORTHO05D006128 1.8e-26 123.2 137 50.4
Dinv42201 Davidia involucrata HOM05D004852 ORTHO05D006128 6.7e-26 121.3 160 43.8
Duzib205G0175 Durio zibethinus HOM05D004852 ORTHO05D006128 1.9e-25 119.8 152 47.4
Atru.chr5.2475 Acer truncatum HOM05D004852 ORTHO05D006128 2.5e-25 119.4 164 45.1
Prupe.8G136700 Prunus persica HOM05D004852 ORTHO05D006128 7.4e-25 117.9 166 42.2
Atru.chr3.2810 Acer truncatum HOM05D004852 ORTHO05D006128 9.7e-25 117.5 164 45.1
FvH4_2g04972 Fragaria vesca HOM05D004852 ORTHO05D006128 2.2e-24 116.3 159 44.7
FAN15G1156 Fragaria x ananassa HOM05D004852 ORTHO05D006128 3.7e-24 115.5 159 44.0
CiPaw.05G012900 Carya illinoinensis HOM05D004852 ORTHO05D006128 1.4e-23 113.6 157 42.0
RcHm_v2.0_Chr6g0254741 Rosa chinensis HOM05D004852 ORTHO05D006128 1.4e-23 113.6 139 48.2
Actinidia05501 Actinidia chinensis HOM05D004852 ORTHO05D006128 5.3e-23 111.7 134 45.5
Sabra09G0072700 Salix brachista HOM05D004852 ORTHO05D006128 6.9e-23 111.3 136 46.3
Gohir.D13G043200 Gossypium hirsutum HOM05D004852 ORTHO05D006128 1.5e-22 110.2 136 48.5
Medtr5g004960 Medicago truncatula HOM05D004852 ORTHO05D006128 1.5e-22 110.2 133 44.4
Gorai.013G047900 Gossypium raimondii HOM05D004852 ORTHO05D006128 2.0e-22 109.8 136 48.5
Eucgr.I01096 Eucalyptus grandis HOM05D004852 ORTHO05D006128 3.8e-21 105.5 138 42.0
Phvul.002G053200 Phaseolus vulgaris HOM05D004852 ORTHO05D006128 6.5e-21 104.8 134 45.5
Glyma.01G243900 Glycine max HOM05D004852 ORTHO05D006128 8.5e-21 104.4 133 42.9
Gohir.A13G044100 Gossypium hirsutum HOM05D004852 ORTHO05D006128 1.1e-20 104.0 136 47.1
MD10G1098400 Malus domestica HOM05D004852 ORTHO05D006128 1.4e-20 103.6 160 42.5
Manes.07G069666 Manihot esculenta HOM05D004852 ORTHO05D006128 1.4e-20 103.6 158 41.1
arahy.Tifrunner.gnm1.ann1.F6JX6R Arachis hypogaea HOM05D004852 ORTHO05D006128 2.5e-20 102.8 137 43.8
TPR.G21613 Trifolium pratense HOM05D004852 ORTHO05D006128 3.2e-20 102.4 150 40.0
GSVIVG01037905001 Vitis vinifera HOM05D004852 ORTHO05D006128 3.2e-20 102.4 150 40.0
arahy.Tifrunner.gnm1.ann1.9X93LG Arachis hypogaea HOM05D004852 ORTHO05D006128 5.5e-20 101.7 139 43.2
DCAR_029088 Daucus carota HOM05D004852 ORTHO05D006128 5.5e-20 101.7 136 42.6
Ca_24346_v3 Cicer arietinum L. HOM05D004852 ORTHO05D006128 9.4e-20 100.9 133 42.1
ClCG02G006490 Citrullus lanatus HOM05D004852 ORTHO05D006128 4.7e-19 98.6 149 38.9
PGR142G1976 Punica granatum HOM05D004852 ORTHO05D006128 4.7e-19 98.6 147 42.2
CSS0042044 Camellia sinensis var. sinensis HOM05D004852 ORTHO05D006128 6.1e-19 98.2 152 39.5
Ciclev10027730m.g Citrus clementina HOM05D004852 ORTHO05D006128 6.1e-19 98.2 132 46.2
CsaV3_7G008100 Cucumis sativus L. HOM05D004852 ORTHO05D006128 6.1e-19 98.2 158 36.7
MELO3C005497.2 Cucumis melo HOM05D004852 ORTHO05D006128 7.9e-19 97.8 138 40.6
Nn1g04670 Nelumbo nucifera HOM05D004852 ORTHO05D006128 7.9e-19 97.8 152 37.5
THA.LOC104812918 Tarenaya hassleriana HOM05D004852 ORTHO05D006128 1.0e-18 97.4 155 40.0
Lj5A215G62 Lonicera japonica HOM05D004852 ORTHO05D006128 1.4e-18 97.1 133 42.1
Lalb_Chr09g0319581 Lupinus albus HOM05D004852 ORTHO05D006128 1.8e-18 96.7 133 42.9
SalBow3G4263 Salvia bowleyana HOM05D004852 ORTHO05D006128 1.8e-18 96.7 136 44.1
CARHR178150 Cardamine hirsuta HOM05D004852 ORTHO05D006128 3.0e-18 95.9 155 40.6
Peaxi162Scf00016g02441 Petunia axillaris HOM05D004852 ORTHO05D006128 3.0e-18 95.9 137 40.1
Hund06310 Selenicereus undatus HOM05D004852 ORTHO05D006128 3.0e-18 95.9 131 41.2
Sed0001586 Sechium edule HOM05D004852 ORTHO05D006128 3.9e-18 95.5 140 42.9
Sopen01g049730 Solanum pennellii HOM05D004852 ORTHO05D006128 3.9e-18 95.5 132 39.4
AL8G14780 Arabidopsis lyrata HOM05D004852 ORTHO05D006128 5.1e-18 95.1 144 38.9
Solyc01g107510.3 Solanum lycopersicum HOM05D004852 ORTHO05D006128 5.1e-18 95.1 132 39.4
Aa31LG9G8420 Aethionema arabicum HOM05D004852 ORTHO05D006128 1.5e-17 93.6 139 44.6
AUR62039064 Chenopodium quinoa HOM05D004852 ORTHO05D006128 1.5e-17 93.6 154 36.4
Migut.N01158 Erythranthe guttata HOM05D004852 ORTHO05D006128 3.3e-17 92.4 132 40.9
Thhalv10000766m.g Eutrema salsugineum HOM05D004852 ORTHO05D006128 3.3e-17 92.4 146 41.1
Sc18g0005570 Simmondsia chinensis HOM05D004852 ORTHO05D006128 4.4e-17 92.0 135 42.2
Aqoxy6G02842 Aquilegia oxysepala HOM05D004852 ORTHO05D006128 7.4e-17 91.3 156 36.5
Sp2g09590 Schrenkiella parvula HOM05D004852 ORTHO05D006128 1.3e-16 90.5 147 41.5
Carub.0008s0351 Capsella rubella HOM05D004852 ORTHO05D006128 1.7e-16 90.1 140 42.1
Lj1g0003104 Lotus japonicus HOM05D004852 ORTHO05D006128 1.7e-16 90.1 135 37.8
Oeu044275.2 Olea europaea HOM05D004852 ORTHO05D006128 1.7e-16 90.1 141 39.0
AT5G44750 Arabidopsis thaliana HOM05D004852 ORTHO05D006128 2.2e-16 89.7 133 39.8
Nitab4.5_0004326g0020 Nicotiana tabacum HOM05D004852 ORTHO05D006128 2.8e-16 89.4 140 40.0
Ah.01g018340 Amaranthus hybridus HOM05D004852 ORTHO05D006128 4.8e-16 88.6 153 36.6
BolC7t43304H Brassica oleracea HOM05D004852 ORTHO05D006128 8.2e-16 87.8 136 41.9
COL.COLO4_32578 Corchorus olitorius HOM05D004852 ORTHO05D006128 8.2e-16 87.8 133 41.4
BcaNung06822 Brassica carinata HOM05D004852 ORTHO05D006128 1.4e-15 87.0 135 43.0
EL10Ac9g22261 Beta vulgaris HOM05D004852 ORTHO05D006128 1.8e-15 86.7 133 41.4
Nitab4.5_0001143g0010 Nicotiana tabacum HOM05D004852 ORTHO05D006128 1.8e-15 86.7 135 38.5
HanXRQChr17g0570571 Helianthus annuus HOM05D004852 ORTHO05D006128 2.4e-15 86.3 132 37.1
A06p46930 Brassica napus HOM05D004852 ORTHO05D006128 9.1e-15 84.3 135 40.7
C07p27720 Brassica napus HOM05D004852 ORTHO05D006128 9.1e-15 84.3 136 41.2
BraA06t27566Z Brassica rapa HOM05D004852 ORTHO05D006128 9.1e-15 84.3 135 40.7
Psat4g228520 Pisum sativum HOM05D004852 ORTHO05D006128 9.1e-15 84.3 133 37.6
PSO541G3304 Papaver somniferum HOM05D004852 ORTHO05D006128 2.0e-14 83.2 133 37.6
CAN.G606.8 Capsicum annuum HOM05D004852 ORTHO05D006128 2.6e-14 82.8 143 38.5
Cc02_g19340 Coffea canephora HOM05D004852 ORTHO05D006128 1.3e-13 80.5 142 34.5
ECA236G4936 Erigeron canadensis HOM05D004852 ORTHO05D006128 1.3e-13 80.5 132 34.8
Lsat_1_v5_gn_7_85781 Lactuca sativa HOM05D004852 ORTHO05D006128 1.3e-13 80.5 132 34.1
Os06g0691000 Oryza sativa ssp. japonica HOM05D004852 ORTHO05D006128 5.0e-13 78.6 133 32.3
PGSC0003DMG403025764 Solanum tuberosum HOM05D004852 ORTHO05D006128 4.2e-12 75.5 124 35.5
Zm00001eb226110 Zea mays HOM05D004852 ORTHO05D006128 7.2e-12 74.7 162 32.7
SGA_v2.0_scaffold106G30732 Striga asiatica HOM05D004852 ORTHO05D006128 1.6e-11 73.6 152 33.6
CDE01G0038 Ceratophyllum demersum HOM05D004852 ORTHO05D006128 3.6e-11 72.4 151 31.8
ATR0205G027 Amborella trichopoda HOM05D004852 ORTHO05D006128 1.8e-10 70.1 157 27.4
vmacro19454 Vaccinium macrocarpon HOM05D004852 ORTHO05D006128 3.0e-10 69.3 199 28.6
AUR62010324 Chenopodium quinoa HOM05D004852 ORTHO05D006128 4.4e-09 65.5 153 30.1
HPP92_016994 Vanilla planifolia HOM05D004852 ORTHO05D006128 1.1e-07 60.8 133 30.1
Rhsim05G0088900 Rhododendron simsii HOM05D004852 ORTHO05D006128 1.6e-06 57.0 102 38.2
Rhsim05G0088800 Rhododendron simsii HOM05D004852 ORTHO05D006128 2.6e-06 56.2 179 27.4
TAR376G0480 Trochodendron aralioides HOM05D004852 ORTHO05D006128 4.5e-06 55.5 62 48.4


User provided reference genes

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