Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.5e-147 526.2 266 100.0
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 7.1e-81 304.7 225 71.1
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 7.1e-81 304.7 225 71.1
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 2.4e-76 289.7 224 67.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 5.8e-75 285.0 226 65.9
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 1.3e-74 283.9 217 66.8
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.9e-73 280.0 233 64.8
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 5.4e-73 278.5 223 67.3
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 5.4e-73 278.5 224 65.6
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 1.3e-71 273.9 223 65.9
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 1.7e-71 273.5 227 64.8
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 5.1e-71 271.9 224 63.8
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 6.6e-71 271.6 230 63.5
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.6e-71 271.6 236 64.0
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 6.6e-71 271.6 236 64.0
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 1.5e-70 270.4 224 65.6
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 1.5e-70 270.4 224 65.6
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 1.5e-70 270.4 225 64.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.9e-70 270.0 225 63.6
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 2.5e-70 269.6 225 64.0
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 2.5e-70 269.6 223 66.8
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.6e-69 266.9 224 62.1
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 2.1e-69 266.5 225 61.8
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 2.8e-69 266.2 229 63.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 8.1e-69 264.6 225 65.3
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 8.1e-69 264.6 225 62.7
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 1.8e-68 263.5 228 63.2
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 1.8e-68 263.5 224 62.9
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 1.8e-68 263.5 230 63.9
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 6.9e-68 261.5 223 62.8
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 9.0e-68 261.2 234 63.2
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.2e-67 260.8 238 59.7
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.2e-67 260.8 227 62.1
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.5e-67 260.4 239 62.3
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 1.5e-67 260.4 236 58.9
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 2.6e-67 259.6 223 62.3
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 2.6e-67 259.6 224 62.1
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 3.4e-67 259.2 225 62.2
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 4.4e-67 258.8 168 75.6
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 4.4e-67 258.8 219 63.9
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 4.4e-67 258.8 231 61.0
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 5.8e-67 258.5 236 61.0
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 5.8e-67 258.5 224 62.5
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.2e-66 256.5 227 61.2
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 2.2e-66 256.5 229 60.7
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.2e-66 256.5 230 62.6
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.2e-66 256.5 230 62.6
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 2.9e-66 256.1 225 61.3
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 3.8e-66 255.8 230 61.3
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 3.8e-66 255.8 227 63.0
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-65 254.2 228 61.4
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.1e-65 254.2 226 61.1
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.1e-65 254.2 212 65.1
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.1e-65 254.2 192 67.7
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 1.1e-65 254.2 233 60.5
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 1.1e-65 254.2 223 63.2
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 1.4e-65 253.8 224 60.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.4e-65 253.8 238 58.4
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 1.9e-65 253.4 226 61.1
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.9e-65 253.4 239 60.7
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.9e-65 253.4 228 64.5
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 3.2e-65 252.7 228 61.8
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 3.2e-65 252.7 192 67.7
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 4.2e-65 252.3 223 61.4
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 5.4e-65 251.9 226 59.3
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 5.4e-65 251.9 226 59.3
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 5.4e-65 251.9 226 59.3
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 5.4e-65 251.9 211 60.7
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 7.1e-65 251.5 231 56.3
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 7.1e-65 251.5 226 61.9
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 7.1e-65 251.5 178 69.1
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 6.0e-64 248.4 200 65.0
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 1.0e-63 247.7 231 55.8
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 1.3e-63 247.3 223 58.7
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 1.7e-63 246.9 223 60.1
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 2.3e-63 246.5 229 59.8
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 3.0e-63 246.1 229 60.3
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 3.9e-63 245.7 246 55.3
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 3.9e-63 245.7 222 59.0
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 5.1e-63 245.4 223 59.6
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 6.6e-63 245.0 225 58.7
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 6.6e-63 245.0 171 69.0
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 1.1e-62 244.2 225 58.7
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 1.9e-62 243.4 226 58.4
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 1.9e-62 243.4 225 59.1
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.3e-61 240.7 189 66.1
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.4e-60 237.3 223 57.4
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 1.8e-60 236.9 224 58.9
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 1.8e-60 236.9 224 58.9
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 1.8e-60 236.9 224 58.9
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 1.8e-60 236.9 225 58.7
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 5.3e-60 235.3 193 65.3
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 5.3e-60 235.3 225 57.3
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 4.5e-59 232.3 225 59.1
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 1.3e-58 230.7 164 72.0
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.7e-58 230.3 215 57.7
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 2.4e-57 226.5 167 70.1
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 2.7e-56 223.0 235 51.1
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 6.0e-56 221.9 223 58.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 1.1e-54 217.6 200 55.0
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 5.6e-54 215.3 225 56.0
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 2.8e-53 213.0 224 54.5
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 6.2e-53 211.8 224 54.0
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 1.1e-52 211.1 127 77.2
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-51 206.8 172 58.1
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.0e-51 206.8 134 72.4
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 6.4e-50 201.8 126 76.2
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 6.4e-50 201.8 134 70.1
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 1.4e-49 200.7 161 59.0
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.9e-49 200.3 180 55.0
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.9e-47 192.6 163 53.4
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 3.9e-47 192.6 163 53.4
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 6.7e-47 191.8 163 53.4
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 4.8e-45 185.7 211 45.5
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 5.3e-44 182.2 135 67.4
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 2.0e-43 180.3 159 55.3
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 1.1e-33 147.9 126 54.0
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 1.0e-31 141.4 109 68.8
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 2.3e-31 140.2 120 55.0
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 3.3e-30 136.3 225 44.4
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 8.2e-29 131.7 120 52.5
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 2.4e-28 130.2 116 61.2
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 1.2e-27 127.9 120 57.5
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 7.7e-27 125.2 190 39.5
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 5.1e-23 112.5 113 51.3
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 4.5e-19 99.4 161 35.4
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 8.8e-15 85.1 44 86.4
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.3e-12 75.9 91 42.9
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.2e-11 74.7 90 44.4
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.6e-11 73.6 83 44.6
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.5e-11 72.8 92 42.4
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.7e-11 72.0 80 43.8
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.7e-11 72.0 82 45.1
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.0e-10 71.6 106 38.7
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 5.0e-10 69.3 93 41.9
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.0e-10 69.3 91 39.6
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 6.5e-10 68.9 57 57.9
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 1.5e-09 67.8 67 52.2
AT2G10550 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.7e-08 63.5 95 43.2
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.7e-08 62.8 32 84.4
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-07 61.2 74 40.5
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 1.4e-07 61.2 71 40.8
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 2.3e-07 60.5 68 50.0
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 7.5e-06 55.5 63 41.3
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 7.5e-06 55.5 63 41.3


User provided reference genes

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