Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c36505.3 Carica papaya HOM05D003901 ORTHO05D004511 3.4e-123 444.9 208 100.0
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 3.6e-64 248.8 130 91.5
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 5.2e-63 245.0 130 89.2
Ciclev10027719m.g Citrus clementina HOM05D003901 ORTHO05D004511 9.8e-62 240.7 130 88.5
CANSAT54G2221 Cannabis sativa HOM05D003901 ORTHO05D004511 1.3e-61 240.4 130 88.5
Ca_19879_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 1.7e-61 240.0 129 88.4
Dinv29460 Davidia involucrata HOM05D003901 ORTHO05D004511 3.7e-61 238.8 130 87.7
Potri.009G144800 Populus trichocarpa HOM05D003901 ORTHO05D004511 4.9e-61 238.4 130 87.7
Cfa010046 Carpinus fangiana HOM05D003901 ORTHO05D004511 6.3e-61 238.0 130 89.2
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 6.3e-61 238.0 129 86.8
PGR102G2249 Punica granatum HOM05D003901 ORTHO05D004511 8.3e-61 237.7 129 86.8
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 1.1e-60 237.3 129 87.6
CSS0013179 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.4e-60 236.1 130 85.4
CSS0026986 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 2.4e-60 236.1 130 85.4
Sc12g0004380 Simmondsia chinensis HOM05D003901 ORTHO05D004511 2.4e-60 236.1 130 86.9
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 3.1e-60 235.7 130 85.4
Nn1g08411 Nelumbo nucifera HOM05D003901 ORTHO05D004511 3.1e-60 235.7 130 85.4
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 4.1e-60 235.3 130 84.6
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 4.1e-60 235.3 129 86.8
Actinidia24200 Actinidia chinensis HOM05D003901 ORTHO05D004511 5.4e-60 235.0 130 86.2
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 5.4e-60 235.0 130 84.6
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 5.4e-60 235.0 130 84.6
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 7.0e-60 234.6 130 86.2
CiPaw.14G101900 Carya illinoinensis HOM05D003901 ORTHO05D004511 9.2e-60 234.2 130 84.6
TPR.G23813 Trifolium pratense HOM05D003901 ORTHO05D004511 1.2e-59 233.8 129 86.0
BcaC01g02054 Brassica carinata HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 83.8
A06p21860 Brassica napus HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 83.8
C03p69110 Brassica napus HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 83.8
BolC3t19166H Brassica oleracea HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 83.8
BraA06t25277Z Brassica rapa HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 83.8
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 1.6e-59 233.4 129 85.3
Sabra09G0112300 Salix brachista HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 86.2
Sabra09G0115000 Salix brachista HOM05D003901 ORTHO05D004511 1.6e-59 233.4 130 86.2
arahy.Tifrunner.gnm1.ann1.3X8FVR Arachis hypogaea HOM05D003901 ORTHO05D004511 2.0e-59 233.0 129 86.0
ClCG02G022110 Citrullus lanatus HOM05D003901 ORTHO05D004511 2.0e-59 233.0 130 85.4
RcHm_v2.0_Chr5g0044121 Rosa chinensis HOM05D003901 ORTHO05D004511 2.0e-59 233.0 130 86.9
Sabra04G0124700 Salix brachista HOM05D003901 ORTHO05D004511 2.0e-59 233.0 130 84.6
CARHR104350 Cardamine hirsuta HOM05D003901 ORTHO05D004511 2.7e-59 232.6 130 83.1
Glyma.13G317500 Glycine max HOM05D003901 ORTHO05D004511 2.7e-59 232.6 129 86.8
Prupe.8G049600 Prunus persica HOM05D003901 ORTHO05D004511 2.7e-59 232.6 130 84.6
TAR623G0259 Trochodendron aralioides HOM05D003901 ORTHO05D004511 2.7e-59 232.6 130 86.2
Medtr4g053675 Medicago truncatula HOM05D003901 ORTHO05D004511 3.5e-59 232.3 129 87.6
Nitab4.5_0000234g0130 Nicotiana tabacum HOM05D003901 ORTHO05D004511 3.5e-59 232.3 130 84.6
Nitab4.5_0002837g0010 Nicotiana tabacum HOM05D003901 ORTHO05D004511 3.5e-59 232.3 130 84.6
vmacro03304 Vaccinium macrocarpon HOM05D003901 ORTHO05D004511 3.5e-59 232.3 130 83.8
Psat5g093200 Pisum sativum HOM05D003901 ORTHO05D004511 4.5e-59 231.9 129 86.8
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 4.5e-59 231.9 130 86.2
TWI79G1394 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 5.9e-59 231.5 130 84.6
CSS0003254 Camellia sinensis var. sinensis HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 84.6
MELO3C021430.2 Cucumis melo HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 84.6
Thhalv10010089m.g Eutrema salsugineum HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 82.3
FvH4_7g01610 Fragaria vesca HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 86.2
Lj2C981T10 Lonicera japonica HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 85.4
Peaxi162Scf00086g02615 Petunia axillaris HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 84.6
Sed0027491 Sechium edule HOM05D003901 ORTHO05D004511 7.8e-59 231.1 130 84.6
AUR62039227 Chenopodium quinoa HOM05D003901 ORTHO05D004511 1.0e-58 230.7 129 85.3
Gohir.A08G004600 Gossypium hirsutum HOM05D003901 ORTHO05D004511 1.0e-58 230.7 130 86.2
Rhsim13G0109800 Rhododendron simsii HOM05D003901 ORTHO05D004511 1.0e-58 230.7 130 83.8
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 1.3e-58 230.3 130 85.4
FAN11G2495 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.3e-58 230.3 130 85.4
FAN21G1062 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.3e-58 230.3 130 85.4
Potri.004G184900 Populus trichocarpa HOM05D003901 ORTHO05D004511 1.3e-58 230.3 130 85.4
BcaB02g10752 Brassica carinata HOM05D003901 ORTHO05D004511 2.3e-58 229.6 130 81.5
CsaV3_6G014950 Cucumis sativus L. HOM05D003901 ORTHO05D004511 2.3e-58 229.6 130 83.8
Duzib150G1114 Durio zibethinus HOM05D003901 ORTHO05D004511 2.3e-58 229.6 129 86.8
AUR62009782 Chenopodium quinoa HOM05D003901 ORTHO05D004511 2.9e-58 229.2 129 84.5
Gohir.D08G014900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 2.9e-58 229.2 130 85.4
Gorai.004G009300 Gossypium raimondii HOM05D003901 ORTHO05D004511 2.9e-58 229.2 130 85.4
THA.LOC104810914 Tarenaya hassleriana HOM05D003901 ORTHO05D004511 2.9e-58 229.2 130 82.3
FAN03G3037 Fragaria x ananassa HOM05D003901 ORTHO05D004511 3.8e-58 228.8 130 85.4
Lalb_Chr03g0028001 Lupinus albus HOM05D003901 ORTHO05D004511 3.8e-58 228.8 129 84.5
Duzib170G0819 Durio zibethinus HOM05D003901 ORTHO05D004511 5.0e-58 228.4 130 85.4
FAN16G3118 Fragaria x ananassa HOM05D003901 ORTHO05D004511 5.0e-58 228.4 129 85.3
Gorai.009G086800 Gossypium raimondii HOM05D003901 ORTHO05D004511 6.6e-58 228.0 130 85.4
GSVIVG01036170001 Vitis vinifera HOM05D003901 ORTHO05D004511 6.6e-58 228.0 130 83.8
EL10Ac7g15802 Beta vulgaris HOM05D003901 ORTHO05D004511 8.6e-58 227.6 129 84.5
Ca_19387_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 8.6e-58 227.6 129 86.0
Ca_19390_v3 Cicer arietinum L. HOM05D003901 ORTHO05D004511 8.6e-58 227.6 129 86.0
PSO384G0212 Papaver somniferum HOM05D003901 ORTHO05D004511 1.5e-57 226.9 130 83.1
TPR.G17239 Trifolium pratense HOM05D003901 ORTHO05D004511 1.5e-57 226.9 129 86.0
Duzib168G1973 Durio zibethinus HOM05D003901 ORTHO05D004511 2.5e-57 226.1 130 85.4
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 2.5e-57 226.1 129 82.2
Eucgr.B03876 Eucalyptus grandis HOM05D003901 ORTHO05D004511 3.3e-57 225.7 130 80.0
Medtr2g086140 Medicago truncatula HOM05D003901 ORTHO05D004511 3.3e-57 225.7 129 83.7
FAN25G0520 Fragaria x ananassa HOM05D003901 ORTHO05D004511 4.3e-57 225.3 130 83.8
HanXRQChr13g0397211 Helianthus annuus HOM05D003901 ORTHO05D004511 4.3e-57 225.3 130 81.5
MSTRG.18747 Avicennia marina HOM05D003901 ORTHO05D004511 5.6e-57 224.9 130 83.8
ECA233G5986 Erigeron canadensis HOM05D003901 ORTHO05D004511 5.6e-57 224.9 130 81.5
Solyc11g067200.2 Solanum lycopersicum HOM05D003901 ORTHO05D004511 5.6e-57 224.9 130 81.5
Sopen11g026900 Solanum pennellii HOM05D003901 ORTHO05D004511 5.6e-57 224.9 130 81.5
ATR0820G249 Amborella trichopoda HOM05D003901 ORTHO05D004511 7.3e-57 224.6 130 83.1
Lalb_Chr19g0136621 Lupinus albus HOM05D003901 ORTHO05D004511 7.3e-57 224.6 129 82.9
QL01p012653 Quercus lobata HOM05D003901 ORTHO05D004511 9.5e-57 224.2 166 69.3
CAN.G942.7 Capsicum annuum HOM05D003901 ORTHO05D004511 1.6e-56 223.4 130 80.8
BcaB01g01161 Brassica carinata HOM05D003901 ORTHO05D004511 2.1e-56 223.0 130 80.0
MD00G1078300 Malus domestica HOM05D003901 ORTHO05D004511 2.1e-56 223.0 130 81.5
Lalb_Chr01g0004811 Lupinus albus HOM05D003901 ORTHO05D004511 3.6e-56 222.2 129 83.7
CDE08G0670 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 6.1e-56 221.5 129 76.7
Aa31LG4G13900 Aethionema arabicum HOM05D003901 ORTHO05D004511 8.0e-56 221.1 132 78.8
Ah.08g215860 Amaranthus hybridus HOM05D003901 ORTHO05D004511 8.0e-56 221.1 129 82.9
PGSC0003DMG400007404 Solanum tuberosum HOM05D003901 ORTHO05D004511 8.0e-56 221.1 130 80.0
Cc01_g09440 Coffea canephora HOM05D003901 ORTHO05D004511 1.0e-55 220.7 129 82.9
Cc03_g06690 Coffea canephora HOM05D003901 ORTHO05D004511 1.0e-55 220.7 129 82.9
Lsat_1_v5_gn_6_40560 Lactuca sativa HOM05D003901 ORTHO05D004511 1.0e-55 220.7 130 81.5
Haze_23407 Corylus avellana HOM05D003901 ORTHO05D004511 3.1e-55 219.2 158 72.2
PSO339G1552 Papaver somniferum HOM05D003901 ORTHO05D004511 4.0e-55 218.8 130 80.8
SalBow6G4040 Salvia bowleyana HOM05D003901 ORTHO05D004511 6.8e-55 218.0 129 79.8
Hund20872 Selenicereus undatus HOM05D003901 ORTHO05D004511 6.8e-55 218.0 129 79.1
Migut.D02350 Erythranthe guttata HOM05D003901 ORTHO05D004511 7.5e-54 214.5 130 80.0
Aqoxy2G01263 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 9.8e-54 214.2 129 77.5
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 9.8e-54 214.2 129 76.0
SGA_v2.0_scaffold147G36366 Striga asiatica HOM05D003901 ORTHO05D004511 1.7e-53 213.4 128 81.2
SHI06109 Sapria himalayana HOM05D003901 ORTHO05D004511 6.4e-53 211.5 129 76.0
HPP92_006803 Vanilla planifolia HOM05D003901 ORTHO05D004511 5.4e-52 208.4 129 77.5
DCAR_012182 Daucus carota HOM05D003901 ORTHO05D004511 2.7e-51 206.1 130 76.2
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 3.9e-50 202.2 130 76.2
MD10G1043400 Malus domestica HOM05D003901 ORTHO05D004511 8.6e-50 201.1 118 81.4
Actinidia37329 Actinidia chinensis HOM05D003901 ORTHO05D004511 1.9e-49 199.9 130 76.2
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 1.6e-48 196.8 130 75.4
Lj1C241G3 Lonicera japonica HOM05D003901 ORTHO05D004511 3.6e-48 195.7 120 77.5
AUR62044072 Chenopodium quinoa HOM05D003901 ORTHO05D004511 4.7e-48 195.3 142 71.8
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 6.2e-48 194.9 129 73.6
Aqoxy4G02822 Aquilegia oxysepala HOM05D003901 ORTHO05D004511 1.9e-44 183.3 144 65.3
Actinidia07234 Actinidia chinensis HOM05D003901 ORTHO05D004511 4.1e-44 182.2 106 83.0
COL.COLO4_19917 Corchorus olitorius HOM05D003901 ORTHO05D004511 7.0e-44 181.4 108 84.3
Gohir.D05G084900 Gossypium hirsutum HOM05D003901 ORTHO05D004511 4.0e-39 165.6 90 87.8
Sp5g16710 Schrenkiella parvula HOM05D003901 ORTHO05D004511 1.3e-37 160.6 91 78.0
FAN06G4251 Fragaria x ananassa HOM05D003901 ORTHO05D004511 1.7e-37 160.2 89 84.3
Sp5g16690 Schrenkiella parvula HOM05D003901 ORTHO05D004511 3.9e-34 149.1 84 78.6
Oeu058251.1 Olea europaea HOM05D003901 ORTHO05D004511 1.5e-33 147.1 104 67.3
Gohir.A05G082000 Gossypium hirsutum HOM05D003901 ORTHO05D004511 3.1e-31 139.4 74 87.8
FAN25G0348 Fragaria x ananassa HOM05D003901 ORTHO05D004511 2.0e-30 136.7 73 89.0
Pp3c16_16320 Physcomitrium patens HOM05D003901 ORTHO05D004511 7.3e-25 118.2 179 39.7
AagrBONN_evm.TU.Sc2ySwM_228.5081 Anthoceros agrestis HOM05D003901 ORTHO05D004511 1.1e-23 114.4 136 44.9
SEGI_40901 Sequoiadendron giganteum HOM05D003901 ORTHO05D004511 3.1e-23 112.8 90 64.4
Pp3c27_1720 Physcomitrium patens HOM05D003901 ORTHO05D004511 6.9e-23 111.7 108 52.8
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 6.9e-23 111.7 131 48.1
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 6.9e-23 111.7 131 48.1
SGA_v2.0_scaffold22G09887 Striga asiatica HOM05D003901 ORTHO05D004511 1.5e-22 110.5 124 50.0
Dinv42569 Davidia involucrata HOM05D003901 ORTHO05D004511 9.3e-20 101.3 51 86.3
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 1.9e-17 93.6 129 44.2
Mapoly0043s0108 Marchantia polymorpha HOM05D003901 ORTHO05D004511 6.2e-16 88.6 141 37.6
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 9.3e-12 74.7 114 43.9
Oeu038979.1 Olea europaea HOM05D003901 ORTHO05D004511 3.5e-11 72.8 43 76.7
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 3.0e-10 69.7 48 66.7
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 6.7e-10 68.6 141 37.6
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 6.7e-10 68.6 141 37.6
Oeu058252.1 Olea europaea HOM05D003901 ORTHO05D004511 2.1e-08 63.5 40 75.0
Dinv20131 Davidia involucrata HOM05D000041 ORTHO05D014616 6.2e-08 62.0 39 76.9
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 6.2e-08 62.0 140 33.6
Sabra09G0112400 Salix brachista HOM05D000477 ORTHO05D000338 1.4e-07 60.8 39 69.2


User provided reference genes

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