Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cpa.g.c34800 Carica papaya HOM05D000104 ORTHO05D030744 6.6e-23 109.8 53 100.0
Cpa.g.c36207 Carica papaya HOM05D000104 ORTHO05D004881 6.6e-23 109.8 53 100.0
Ciclev10014019m.g Citrus clementina HOM05D000104 ORTHO05D004881 4.3e-22 107.1 53 96.2
Aqoxy2G00308 Aquilegia oxysepala HOM05D000104 ORTHO05D004881 7.3e-22 106.3 53 96.2
MBI13_g29528_MAGBIO Magnolia biondii HOM05D000104 ORTHO05D004881 1.6e-21 105.1 53 92.5
Manes.01G181800 Manihot esculenta HOM05D000104 ORTHO05D004881 1.6e-21 105.1 53 94.3
COL.COLO4_07230 Corchorus olitorius HOM05D000104 ORTHO05D004881 2.1e-21 104.8 53 94.3
Gohir.A09G111200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 2.1e-21 104.8 53 94.3
Gohir.D09G107800 Gossypium hirsutum HOM05D000104 ORTHO05D004881 2.1e-21 104.8 53 94.3
CiPaw.13G152700 Carya illinoinensis HOM05D000104 ORTHO05D004881 2.8e-21 104.4 53 92.5
Manes.02G141700 Manihot esculenta HOM05D000104 ORTHO05D004881 3.6e-21 104.0 53 92.5
Potri.001G253400 Populus trichocarpa HOM05D000104 ORTHO05D004881 3.6e-21 104.0 53 94.3
Potri.009G047800 Populus trichocarpa HOM05D000104 ORTHO05D004881 3.6e-21 104.0 53 94.3
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 3.6e-21 104.0 53 94.3
CSS0005534 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 6.2e-21 103.2 53 94.3
CSS0013867 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D004881 6.2e-21 103.2 53 94.3
Gohir.A13G217600 Gossypium hirsutum HOM05D000104 ORTHO05D004881 6.2e-21 103.2 53 92.5
Lj1C295T5 Lonicera japonica HOM05D000104 ORTHO05D004881 6.2e-21 103.2 53 94.3
Lj1C304T4 Lonicera japonica HOM05D000104 ORTHO05D004881 6.2e-21 103.2 53 94.3
MD11G1194800 Malus domestica HOM05D000104 ORTHO05D004881 8.1e-21 102.8 53 92.5
PSO339G0098 Papaver somniferum HOM05D000104 ORTHO05D004881 8.1e-21 102.8 53 92.5
PSO384G4411 Papaver somniferum HOM05D000104 ORTHO05D004881 8.1e-21 102.8 53 92.5
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 8.1e-21 102.8 53 92.5
Atru.chr3.2807 Acer truncatum HOM05D000104 ORTHO05D004881 1.1e-20 102.4 53 92.5
Gohir.D13G221200 Gossypium hirsutum HOM05D000104 ORTHO05D004881 1.1e-20 102.4 53 90.6
Gorai.006G125500 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.1e-20 102.4 53 92.5
Gorai.013G252300 Gossypium raimondii HOM05D000104 ORTHO05D004881 1.1e-20 102.4 53 90.6
Thecc.09G243900 Theobroma cacao HOM05D000104 ORTHO05D004881 1.1e-20 102.4 53 92.5
Actinidia16360 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.4e-20 102.1 53 92.5
Dinv36192 Davidia involucrata HOM05D000104 ORTHO05D004881 1.4e-20 102.1 53 92.5
Nn7g36507 Nelumbo nucifera HOM05D000104 ORTHO05D004881 1.4e-20 102.1 53 90.6
Rhsim13G0216000 Rhododendron simsii HOM05D000104 ORTHO05D004881 1.4e-20 102.1 53 92.5
vmacro04008 Vaccinium macrocarpon HOM05D000104 ORTHO05D004881 1.4e-20 102.1 53 92.5
Actinidia06945 Actinidia chinensis HOM05D000104 ORTHO05D004881 1.8e-20 101.7 53 90.6
CANSAT54G1548 Cannabis sativa HOM05D000104 ORTHO05D004881 1.8e-20 101.7 53 90.6
HanXRQChr14g0433041 Helianthus annuus HOM05D000104 ORTHO05D004881 1.8e-20 101.7 53 92.5
AagrBONN_evm.TU.Sc2ySwM_344.3208 Anthoceros agrestis HOM05D000104 ORTHO05D004881 2.4e-20 101.3 53 86.8
CDE09G0540 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 2.4e-20 101.3 53 90.6
Haze_23201 Corylus avellana HOM05D000104 ORTHO05D004881 2.4e-20 101.3 53 88.7
Dinv08770 Davidia involucrata HOM05D000104 ORTHO05D004881 3.1e-20 100.9 53 92.5
Prupe.4G258700 Prunus persica HOM05D000104 ORTHO05D004881 3.1e-20 100.9 53 90.6
Eucgr.L03337 Eucalyptus grandis HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
FvH4_3g28110 Fragaria vesca HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
FAN11G2466 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
FAN16G2830 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
FAN21G2988 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
FAN25G0427 Fragaria x ananassa HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 90.6
Pp3c5_19940 Physcomitrium patens HOM05D000104 ORTHO05D004881 4.0e-20 100.5 53 84.9
ATR0721G152 Amborella trichopoda HOM05D000104 ORTHO05D004881 5.3e-20 100.1 53 86.8
DCAR_002093 Daucus carota HOM05D000104 ORTHO05D004881 5.3e-20 100.1 53 88.7
RcHm_v2.0_Chr5g0050791 Rosa chinensis HOM05D000104 ORTHO05D004881 5.3e-20 100.1 53 88.7
Atru.chr1.1092 Acer truncatum HOM05D000104 ORTHO05D030744 6.9e-20 99.8 53 90.6
HanXRQChr12g0357371 Helianthus annuus HOM05D000104 ORTHO05D004881 6.9e-20 99.8 53 88.7
ECA233G4577 Erigeron canadensis HOM05D000104 ORTHO05D004881 1.2e-19 99.0 53 88.7
PGR119G1457 Punica granatum HOM05D000104 ORTHO05D004881 1.2e-19 99.0 53 90.6
TAR636G3192 Trochodendron aralioides HOM05D000104 ORTHO05D004881 1.2e-19 99.0 53 86.8
Atru.chr12.2436 Acer truncatum HOM05D000104 ORTHO05D030744 1.5e-19 98.6 53 88.7
Sed0002979 Sechium edule HOM05D000104 ORTHO05D004881 1.5e-19 98.6 53 88.7
ClCG02G022980 Citrullus lanatus HOM05D000104 ORTHO05D004881 2.0e-19 98.2 53 88.7
MELO3C014569.2 Cucumis melo HOM05D000104 ORTHO05D004881 2.0e-19 98.2 53 88.7
unitig_699.g19140 Utricularia gibba HOM05D000104 ORTHO05D004881 2.0e-19 98.2 53 88.7
Glyma.02G281000 Glycine max HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 84.9
Glyma.14G033600 Glycine max HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 84.9
MD03G1168800 Malus domestica HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 88.7
Medtr3g053910 Medicago truncatula HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 84.9
Phvul.008G199800 Phaseolus vulgaris HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 84.9
Pp3c6_10390 Physcomitrium patens HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 83.0
VMungo0647G0770 Vigna mungo HOM05D000104 ORTHO05D004881 2.6e-19 97.8 53 84.9
QL01p017715 Quercus lobata HOM05D000104 ORTHO05D004881 3.4e-19 97.4 53 92.5
SGA_v2.0_scaffold3G01470 Striga asiatica HOM05D000104 ORTHO05D004881 3.4e-19 97.4 53 86.8
Ah.06g194420 Amaranthus hybridus HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 90.6
Ca_06225_v3 Cicer arietinum L. HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 84.9
Medtr5g090090 Medicago truncatula HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 84.9
Psat2g019600 Pisum sativum HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 84.9
Sc09g0000930 Simmondsia chinensis HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 90.6
Solyc12g099910.2 Solanum lycopersicum HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 88.7
Sopen12g034530 Solanum pennellii HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 88.7
THA.LOC104826485 Tarenaya hassleriana HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 90.6
TPR.G26010 Trifolium pratense HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 84.9
GSVIVG01037235001 Vitis vinifera HOM05D000104 ORTHO05D004881 4.5e-19 97.1 53 84.9
Cc01_g05810 Coffea canephora HOM05D000104 ORTHO05D004881 5.8e-19 96.7 53 86.8
LjContig00049g0001527 Lotus japonicus HOM05D000104 ORTHO05D004881 5.8e-19 96.7 53 84.9
TWI75G1602 Tripterygium wilfordii HOM05D000104 ORTHO05D004881 5.8e-19 96.7 53 86.8
Aa31sc426G10 Aethionema arabicum HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 88.7
AL3G45270 Arabidopsis lyrata HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 88.7
AT2G13370 Arabidopsis thaliana HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 88.7
Carub.0003s2790 Capsella rubella HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 88.7
CsaV3_6G039100 Cucumis sativus L. HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 86.8
Thhalv10022519m.g Eutrema salsugineum HOM05D000104 ORTHO05D004881 7.6e-19 96.3 53 88.7
EL10Ac4g10173 Beta vulgaris HOM05D000104 ORTHO05D004881 9.9e-19 95.9 53 88.7
Migut.N02364 Erythranthe guttata HOM05D000104 ORTHO05D004881 9.9e-19 95.9 53 86.8
Peaxi162Scf00062g00086 Petunia axillaris HOM05D000104 ORTHO05D004881 9.9e-19 95.9 53 86.8
SEGI_37148 Sequoiadendron giganteum HOM05D000104 ORTHO05D004881 9.9e-19 95.9 53 81.1
arahy.Tifrunner.gnm1.ann1.F2KJX5 Arachis hypogaea HOM05D000104 ORTHO05D004881 1.3e-18 95.5 53 83.0
arahy.Tifrunner.gnm1.ann1.Q1C604 Arachis hypogaea HOM05D000104 ORTHO05D004881 1.3e-18 95.5 53 83.0
Lsat_1_v5_gn_2_38240 Lactuca sativa HOM05D000104 ORTHO05D004881 1.3e-18 95.5 55 85.5
Lsat_1_v5_gn_4_146300 Lactuca sativa HOM05D000104 ORTHO05D004881 1.3e-18 95.5 55 85.5
BcaB02g11515 Brassica carinata HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
BcaC04g23082 Brassica carinata HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
A09p10390 Brassica napus HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
C09p12330 Brassica napus HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
BolC9t54126H Brassica oleracea HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
BraA09t36683Z Brassica rapa HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
CARHR105150 Cardamine hirsuta HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
Sp3g26880 Schrenkiella parvula HOM05D000104 ORTHO05D004881 1.7e-18 95.1 53 86.8
Psat2g047240 Pisum sativum HOM05D000104 ORTHO05D004881 2.2e-18 94.7 53 84.9
CAN.G484.5 Capsicum annuum HOM05D000104 ORTHO05D004881 2.9e-18 94.4 53 84.9
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 2.9e-18 94.4 53 86.8
AUR62039837 Chenopodium quinoa HOM05D000104 ORTHO05D004881 2.9e-18 94.4 53 86.8
Psat5g195080 Pisum sativum HOM05D000104 ORTHO05D004881 2.9e-18 94.4 53 83.0
Cfa009834 Carpinus fangiana HOM05D000104 ORTHO05D004881 4.9e-18 93.6 53 84.9
Hund07450 Selenicereus undatus HOM05D000104 ORTHO05D004881 4.9e-18 93.6 53 86.8
HPP92_006715 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.9e-18 93.6 53 83.0
HPP92_006720 Vanilla planifolia HOM05D000104 ORTHO05D004881 4.9e-18 93.6 53 83.0
Lalb_Chr10g0106381 Lupinus albus HOM05D000104 ORTHO05D004881 1.1e-17 92.4 53 84.9
Nitab4.5_0001925g0220 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.4e-17 91.3 53 86.8
Nitab4.5_0011766g0020 Nicotiana tabacum HOM05D000104 ORTHO05D004881 2.4e-17 91.3 53 86.8
SMO117G0029 Selaginella moellendorffii HOM05D000104 ORTHO05D004881 2.4e-17 91.3 53 73.6
Lalb_Chr04g0249101 Lupinus albus HOM05D000104 ORTHO05D004881 4.2e-17 90.5 53 83.0
Mapoly0005s0060 Marchantia polymorpha HOM05D000104 ORTHO05D004881 9.6e-14 79.3 55 70.9
Rhsim13G0125100 Rhododendron simsii HOM05D000017 ORTHO05D000013 1.2e-11 72.4 53 67.9
Cre03.g179300 Chlamydomonas reinhardtii HOM05D000104 ORTHO05D004881 1.3e-10 68.9 53 62.3
CDE08G1000 Ceratophyllum demersum HOM05D000104 ORTHO05D004881 1.8e-07 58.5 53 54.7
PRCOL_00000765 Prasinoderma coloniale HOM05D000104 ORTHO05D004881 7.4e-06 53.1 52 51.9


User provided reference genes

Program Settings