Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG11G015050 Citrullus lanatus HOM05D004433 ORTHO05D005251 0.0e+00 1158.3 592 100.0
MELO3C003474.2 Cucumis melo HOM05D004433 ORTHO05D005251 0.0e+00 1081.6 593 93.1
CsaV3_3G048450 Cucumis sativus L. HOM05D004433 ORTHO05D005251 3.7e-308 1060.8 592 91.4
Sed0005675 Sechium edule HOM05D004433 ORTHO05D005251 6.0e-290 1000.3 593 86.5
Cfa013388 Carpinus fangiana HOM05D004433 ORTHO05D005251 1.1e-235 820.1 607 72.2
CiPaw.08G027400 Carya illinoinensis HOM05D004433 ORTHO05D005251 2.3e-233 812.4 595 72.3
Atru.chr7.2050 Acer truncatum HOM05D004433 ORTHO05D005251 5.2e-233 811.2 533 78.4
RcHm_v2.0_Chr6g0306711 Rosa chinensis HOM05D004433 ORTHO05D005251 5.2e-233 811.2 593 71.7
FvH4_2g35220 Fragaria vesca HOM05D004433 ORTHO05D005251 1.5e-232 809.7 543 75.5
QL12p040912 Quercus lobata HOM05D004433 ORTHO05D005251 2.6e-232 808.9 593 72.7
GSVIVG01035316001 Vitis vinifera HOM05D004433 ORTHO05D005251 9.7e-232 807.0 588 71.9
CSS0005257 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-231 806.6 511 80.4
CSS0005508 Camellia sinensis var. sinensis HOM05D004433 ORTHO05D005251 1.3e-231 806.6 511 80.4
TWI34G1917 Tripterygium wilfordii HOM05D004433 ORTHO05D005251 8.2e-231 803.9 604 70.2
Eucgr.C00613 Eucalyptus grandis HOM05D004433 ORTHO05D005251 1.4e-230 803.1 508 79.7
Ca_03360_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.2e-229 800.0 499 81.2
Phvul.001G078300 Phaseolus vulgaris HOM05D004433 ORTHO05D005251 2.7e-229 798.9 593 71.3
PGR031G3150 Punica granatum HOM05D004433 ORTHO05D005251 2.7e-229 798.9 511 79.5
Glyma.14G144100 Glycine max HOM05D004433 ORTHO05D005251 3.5e-229 798.5 568 73.6
Medtr1g007320 Medicago truncatula HOM05D004433 ORTHO05D005251 3.5e-229 798.5 592 72.1
TAR639G0002 Trochodendron aralioides HOM05D004433 ORTHO05D005251 1.3e-228 796.6 576 72.4
Ciclev10007803m.g Citrus clementina HOM05D004433 ORTHO05D005251 6.5e-228 794.3 599 69.4
FAN15G1676 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.5e-227 792.3 561 72.5
Thecc.09G048300 Theobroma cacao HOM05D004433 ORTHO05D005251 1.2e-226 790.0 515 77.9
Nn8g39044 Nelumbo nucifera HOM05D004433 ORTHO05D005251 4.7e-226 788.1 529 77.1
arahy.Tifrunner.gnm1.ann1.AK26AV Arachis hypogaea HOM05D004433 ORTHO05D005251 6.1e-226 787.7 605 68.8
CANSAT21G1878 Cannabis sativa HOM05D004433 ORTHO05D005251 6.1e-226 787.7 595 70.8
Psat6g036080 Pisum sativum HOM05D004433 ORTHO05D005251 3.0e-225 785.4 506 78.5
Lj1g0025930 Lotus japonicus HOM05D004433 ORTHO05D005251 5.2e-225 784.6 500 79.2
Potri.018G057500 Populus trichocarpa HOM05D004433 ORTHO05D005251 5.2e-225 784.6 503 79.7
THA.LOC104818595 Tarenaya hassleriana HOM05D004433 ORTHO05D005251 8.8e-225 783.9 594 68.0
Duzib150G0295 Durio zibethinus HOM05D004433 ORTHO05D005251 2.6e-224 782.3 602 69.9
Aqoxy5G01364 Aquilegia oxysepala HOM05D004433 ORTHO05D005251 5.7e-224 781.2 506 77.5
Duzib168G1809 Durio zibethinus HOM05D004433 ORTHO05D005251 5.7e-224 781.2 534 75.1
VMungo1383G1648 Vigna mungo HOM05D004433 ORTHO05D005251 5.7e-224 781.2 504 79.2
MD08G1110200 Malus domestica HOM05D004433 ORTHO05D005251 7.5e-224 780.8 603 69.0
Lalb_Chr22g0360911 Lupinus albus HOM05D004433 ORTHO05D005251 2.8e-223 778.9 502 78.5
Oeu019243.1 Olea europaea HOM05D004433 ORTHO05D005251 2.8e-223 778.9 505 77.6
Gohir.D06G090400 Gossypium hirsutum HOM05D004433 ORTHO05D005251 8.3e-223 777.3 534 74.0
Prupe.1G444400 Prunus persica HOM05D004433 ORTHO05D005251 1.4e-222 776.5 605 68.8
Gohir.A06G091200 Gossypium hirsutum HOM05D004433 ORTHO05D005251 1.8e-222 776.2 598 68.2
TPR.G24519 Trifolium pratense HOM05D004433 ORTHO05D005251 3.1e-222 775.4 503 78.7
Actinidia14688 Actinidia chinensis HOM05D004433 ORTHO05D005251 4.1e-222 775.0 533 75.4
Migut.A00179 Erythranthe guttata HOM05D004433 ORTHO05D005251 5.9e-221 771.2 609 67.2
Dinv27935 Davidia involucrata HOM05D004433 ORTHO05D005251 7.7e-221 770.8 552 73.0
Carub.0004s0569 Capsella rubella HOM05D004433 ORTHO05D005251 1.7e-220 769.6 594 66.8
Sp4g05710 Schrenkiella parvula HOM05D004433 ORTHO05D005251 6.6e-220 767.7 600 67.2
CANSAT21G2561 Cannabis sativa HOM05D004433 ORTHO05D005251 1.9e-219 766.1 554 73.1
AT2G25870 Arabidopsis thaliana HOM05D004433 ORTHO05D005251 2.5e-219 765.8 595 66.4
Gorai.010G104100 Gossypium raimondii HOM05D004433 ORTHO05D005251 2.5e-219 765.8 560 70.7
MSTRG.25921 Avicennia marina HOM05D004433 ORTHO05D005251 1.6e-218 763.1 605 66.8
CARHR115360 Cardamine hirsuta HOM05D004433 ORTHO05D005251 1.6e-218 763.1 594 66.5
Thhalv10001936m.g Eutrema salsugineum HOM05D004433 ORTHO05D005251 1.6e-218 763.1 599 66.9
BcaB06g29637 Brassica carinata HOM05D004433 ORTHO05D005251 4.7e-218 761.5 596 66.4
BolC4t27102H Brassica oleracea HOM05D004433 ORTHO05D005251 4.7e-218 761.5 596 66.4
AL4G17700 Arabidopsis lyrata HOM05D004433 ORTHO05D005251 6.1e-218 761.1 595 66.7
A04p20080 Brassica napus HOM05D004433 ORTHO05D005251 6.1e-218 761.1 597 66.5
BraA04t17590Z Brassica rapa HOM05D004433 ORTHO05D005251 8.0e-218 760.8 597 66.7
Sopen08g019860 Solanum pennellii HOM05D004433 ORTHO05D005251 1.4e-217 760.0 596 67.1
Nitab4.5_0008242g0010 Nicotiana tabacum HOM05D004433 ORTHO05D005251 1.8e-217 759.6 504 76.4
Sc23g0005440 Simmondsia chinensis HOM05D004433 ORTHO05D005251 4.0e-217 758.4 515 75.7
C04p55760 Brassica napus HOM05D004433 ORTHO05D005251 6.8e-217 757.7 596 66.1
Solyc08g066180.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 1.5e-216 756.5 507 75.3
BcaB06g29638 Brassica carinata HOM05D004433 ORTHO05D005251 2.0e-216 756.1 533 71.7
FAN20G2992 Fragaria x ananassa HOM05D004433 ORTHO05D005251 3.4e-216 755.4 551 71.7
Aa31LG5G9810 Aethionema arabicum HOM05D004433 ORTHO05D005251 2.2e-215 752.7 545 70.5
CAN.G1444.6 Capsicum annuum HOM05D004433 ORTHO05D005251 2.2e-215 752.7 510 75.5
HanXRQChr02g0047921 Helianthus annuus HOM05D004433 ORTHO05D005251 3.7e-215 751.9 510 75.1
AUR62040221 Chenopodium quinoa HOM05D004433 ORTHO05D005251 1.8e-214 749.6 503 75.0
Lsat_1_v5_gn_6_7781 Lactuca sativa HOM05D004433 ORTHO05D005251 2.4e-214 749.2 550 70.5
vmacro00182 Vaccinium macrocarpon HOM05D004433 ORTHO05D005251 7.8e-213 744.2 607 66.1
Ah.10g034740 Amaranthus hybridus HOM05D004433 ORTHO05D005251 1.3e-212 743.4 598 65.1
AUR62009222 Chenopodium quinoa HOM05D004433 ORTHO05D005251 2.3e-212 742.7 503 74.4
ATR0705G146 Amborella trichopoda HOM05D004433 ORTHO05D005251 1.1e-211 740.3 509 74.1
arahy.Tifrunner.gnm1.ann1.YGB7WG Arachis hypogaea HOM05D004433 ORTHO05D005251 1.9e-211 739.6 603 66.2
FAN27G1484 Fragaria x ananassa HOM05D004433 ORTHO05D005251 5.6e-211 738.0 581 67.6
ECA233G5497 Erigeron canadensis HOM05D004433 ORTHO05D005251 1.0e-209 733.8 508 73.0
Lj7C697T10 Lonicera japonica HOM05D004433 ORTHO05D005251 1.0e-209 733.8 552 68.7
PSO210G3373 Papaver somniferum HOM05D004433 ORTHO05D005251 6.8e-209 731.1 502 74.7
CDE09G0966 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 1.1e-206 723.8 510 71.8
Nitab4.5_0000318g0140 Nicotiana tabacum HOM05D004433 ORTHO05D005251 7.0e-206 721.1 585 66.5
SGA_v2.0_scaffold103G30047 Striga asiatica HOM05D004433 ORTHO05D005251 4.6e-205 718.4 669 60.7
DCAR_003083 Daucus carota HOM05D004433 ORTHO05D005251 1.6e-202 709.9 501 73.3
COL.COLO4_21003 Corchorus olitorius HOM05D004433 ORTHO05D005251 3.1e-201 705.7 544 69.7
SalBow4G2164 Salvia bowleyana HOM05D004433 ORTHO05D005251 5.8e-200 701.4 612 62.6
MBI04_g07004_MAGBIO Magnolia biondii HOM05D004433 ORTHO05D005251 1.4e-198 696.8 543 68.5
Manes.03G060700 Manihot esculenta HOM05D004433 ORTHO05D005251 1.9e-198 696.4 451 79.2
Manes.16G073200 Manihot esculenta HOM05D004433 ORTHO05D005251 2.4e-198 696.0 596 66.3
Prupe.1G444500 Prunus persica HOM05D004433 ORTHO05D005251 1.2e-197 693.7 507 70.2
Actinidia18212 Actinidia chinensis HOM05D004433 ORTHO05D005251 1.9e-195 686.4 464 75.6
Peaxi162Scf00699g00520 Petunia axillaris HOM05D004433 ORTHO05D005251 7.3e-195 684.5 508 70.1
FvH4_2g35230 Fragaria vesca HOM05D004433 ORTHO05D005251 6.4e-191 671.4 496 69.8
EL10Ac2g03971 Beta vulgaris HOM05D004433 ORTHO05D005251 1.6e-189 666.8 524 67.6
Rhsim11G0049500 Rhododendron simsii HOM05D004433 ORTHO05D005251 1.0e-188 664.1 650 57.8
Sabra18G0052000 Salix brachista HOM05D004433 ORTHO05D005251 4.7e-186 655.2 554 65.2
FAN27G0398 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.4e-185 652.9 525 65.7
Hund03376 Selenicereus undatus HOM05D004433 ORTHO05D005251 1.2e-184 650.6 459 72.5
Zm00001eb153790 Zea mays HOM05D004433 ORTHO05D005251 9.2e-182 641.0 487 64.7
RcHm_v2.0_Chr6g0306701 Rosa chinensis HOM05D004433 ORTHO05D005251 8.7e-180 634.4 476 68.3
PSO210G0672 Papaver somniferum HOM05D004433 ORTHO05D005251 6.9e-177 624.8 502 67.1
Glyma.17G192300 Glycine max HOM05D004433 ORTHO05D005251 3.8e-175 619.0 421 76.7
Dinv23396 Davidia involucrata HOM05D004433 ORTHO05D005251 7.3e-171 604.7 377 80.9
MD08G1110300 Malus domestica HOM05D004433 ORTHO05D005251 2.7e-165 586.3 439 68.8
FAN15G3540 Fragaria x ananassa HOM05D004433 ORTHO05D005251 2.8e-162 576.2 548 58.9
Os01g0739400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.3e-161 572.0 440 63.9
ATR1159G027 Amborella trichopoda HOM05D004433 ORTHO05D005251 2.2e-159 566.6 555 58.2
Os02g0227000 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.0e-135 485.7 436 56.9
Lj8A567T31 Lonicera japonica HOM05D004433 ORTHO05D005251 6.1e-133 478.8 345 73.0
unitig_32.g11476 Utricularia gibba HOM05D004433 ORTHO05D005251 1.4e-132 477.6 605 48.4
Pp3c15_25010 Physcomitrium patens HOM05D004433 ORTHO05D005251 4.8e-130 469.2 485 52.4
Zm00001eb239610 Zea mays HOM05D004433 ORTHO05D005251 1.1e-129 468.0 459 53.2
Mapoly0124s0034 Marchantia polymorpha HOM05D004433 ORTHO05D005251 7.0e-129 465.3 485 50.9
Haze_21925 Corylus avellana HOM05D004433 ORTHO05D005251 5.0e-127 459.1 341 73.0
Oeu008300.1 Olea europaea HOM05D004433 ORTHO05D005251 1.6e-125 454.1 509 52.3
Cc08_g09950 Coffea canephora HOM05D004433 ORTHO05D005251 3.3e-123 446.4 403 61.8
HPP92_005557 Vanilla planifolia HOM05D004433 ORTHO05D005251 1.7e-122 444.1 454 53.1
Ciclev10010169m.g Citrus clementina HOM05D004433 ORTHO05D005251 1.0e-119 434.9 419 57.3
Ca_19223_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 1.6e-109 401.0 266 79.7
CBR_g31496 Chara braunii HOM05D004433 ORTHO05D005251 1.3e-106 391.3 488 45.7
Os09g0388400 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 1.2e-88 331.6 355 51.5
Cc08_g09960 Coffea canephora HOM05D004433 ORTHO05D005251 2.6e-83 313.9 204 73.0
HPP92_003623 Vanilla planifolia HOM05D004433 ORTHO05D005251 2.6e-75 287.3 219 65.8
SEGI_35823 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 3.4e-75 287.0 202 68.3
Cpa.g.sc7.220 Carica papaya HOM05D004433 ORTHO05D005251 9.2e-73 278.9 173 76.3
Cpa.g.sc7.222 Carica papaya HOM05D004433 ORTHO05D005251 4.4e-67 260.0 226 65.5
SMO352G0038 Selaginella moellendorffii HOM05D004433 ORTHO05D005251 1.7e-66 258.1 262 50.4
PRCOL_00001006 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 1.9e-65 254.6 391 39.9
SEGI_12418 Sequoiadendron giganteum HOM05D004433 ORTHO05D005251 1.5e-62 245.0 277 50.2
MCO02G391 Micromonas commoda HOM05D004433 ORTHO05D005251 3.6e-61 240.4 285 49.5
Potri.006G235301 Populus trichocarpa HOM05D004433 ORTHO05D005251 2.4e-60 237.7 178 69.1
FAN20G0434 Fragaria x ananassa HOM05D004433 ORTHO05D005251 1.4e-57 228.4 201 64.2
CDE02G1264 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.9e-55 220.3 131 80.9
Ca_12764_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 2.7e-48 197.6 177 60.5
Hma1.2p1_0049F.1_g028280 Hydrangea macrophylla HOM05D004433 ORTHO05D005251 4.3e-46 190.3 113 82.3
Hund19490 Selenicereus undatus HOM05D004433 ORTHO05D005251 5.6e-46 189.9 128 72.7
Cre06.g252150 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 1.7e-42 178.3 275 41.5
Hund19491 Selenicereus undatus HOM05D004433 ORTHO05D005251 2.0e-35 154.8 135 60.7
Oeu059683.2 Olea europaea HOM05D004433 ORTHO05D005251 5.5e-33 146.7 105 69.5
MCO10G003 Micromonas commoda HOM05D004433 ORTHO05D005251 9.3e-33 146.0 269 36.1
Gohir.A08G152250 Gossypium hirsutum HOM05D004433 ORTHO05D005251 2.7e-32 144.4 122 59.8
CDE02G2445 Ceratophyllum demersum HOM05D004433 ORTHO05D005251 3.4e-27 127.5 95 71.6
PRCOL_00006247 Prasinoderma coloniale HOM05D004433 ORTHO05D005251 5.5e-25 120.2 268 32.5
Solyc06g011570.3 Solanum lycopersicum HOM05D004433 ORTHO05D005251 5.5e-25 120.2 104 57.7
Cre09.g402997 Chlamydomonas reinhardtii HOM05D004433 ORTHO05D005251 2.1e-24 118.2 123 51.2
VMungo1215G2735 Vigna mungo HOM05D004433 ORTHO05D005251 6.1e-24 116.7 83 68.7
TAR383G0959 Trochodendron aralioides HOM05D004433 ORTHO05D005251 2.0e-22 111.7 228 36.0
Sopen06g006790 Solanum pennellii HOM05D004433 ORTHO05D005251 4.8e-21 107.1 88 62.5
RcHm_v2.0_Chr6g0271151 Rosa chinensis HOM05D004433 ORTHO05D005251 5.0e-18 97.1 71 69.0
Lj8A567T30 Lonicera japonica HOM05D004433 ORTHO05D005251 6.5e-18 96.7 56 85.7
Os09g0393801 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 5.5e-17 93.6 96 51.0
RcHm_v2.0_Chr6g0310261 Rosa chinensis HOM05D004433 ORTHO05D005251 7.2e-17 93.2 71 66.2
SGA_v2.0_scaffold266G46140 Striga asiatica HOM05D004433 ORTHO05D005251 1.6e-16 92.0 57 78.9
Os09g0393501 Oryza sativa ssp. japonica HOM05D004433 ORTHO05D005251 2.1e-16 91.7 92 52.2
Ca_28629_v3 Cicer arietinum L. HOM05D004433 ORTHO05D005251 3.0e-15 87.8 246 30.1
HPP92_005558 Vanilla planifolia HOM05D004433 ORTHO05D005251 7.4e-14 83.2 55 70.9
Pp3s32_540 Physcomitrium patens HOM05D004878 ORTHO05D021266 2.2e-10 71.6 330 24.2
AT5G38747 Arabidopsis thaliana HOM05D004433 ORTHO05D081644 1.5e-09 68.9 59 55.9
MD15G1112400 Malus domestica HOM05D004433 ORTHO05D005251 1.4e-07 62.4 36 80.6
TAR625G0121 Trochodendron aralioides HOM05D004433 ORTHO05D005251 3.0e-07 61.2 40 82.5
Ca_29420_v3 Cicer arietinum L. HOM05D003834 ORTHO05D044391 1.1e-06 59.3 105 33.3
Medtr1g007290 Medicago truncatula HOM05D004433 ORTHO05D005251 7.5e-06 56.6 52 53.8


User provided reference genes

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