Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G022430 Citrullus lanatus HOM05D005064 ORTHO05D006611 0.0e+00 2015.7 1038 100.0
CsaV3_3G033440 Cucumis sativus L. HOM05D005064 ORTHO05D006611 0.0e+00 1838.9 1036 91.6
MELO3C009135.2 Cucumis melo HOM05D005064 ORTHO05D006611 0.0e+00 1805.4 1060 89.2
Sed0013669 Sechium edule HOM05D005064 ORTHO05D006611 0.0e+00 1710.3 1044 85.3
QL07p034075 Quercus lobata HOM05D005064 ORTHO05D006611 0.0e+00 1129.4 1056 60.0
Atru.chr8.2328 Acer truncatum HOM05D005064 ORTHO05D006611 0.0e+00 1112.1 1053 57.5
Haze_21075 Corylus avellana HOM05D005064 ORTHO05D006611 0.0e+00 1109.0 1084 58.7
Manes.09G111200 Manihot esculenta HOM05D005064 ORTHO05D006611 0.0e+00 1106.3 1060 57.9
GSVIVG01030280001 Vitis vinifera HOM05D005064 ORTHO05D006611 0.0e+00 1094.0 1095 55.9
Dinv35394 Davidia involucrata HOM05D005064 ORTHO05D006611 0.0e+00 1091.6 1047 59.5
Duzib093G0745 Durio zibethinus HOM05D005064 ORTHO05D006611 0.0e+00 1081.2 1067 55.1
Potri.014G189600 Populus trichocarpa HOM05D005064 ORTHO05D006611 7.0e-310 1067.4 1067 56.7
Ciclev10013403m.g Citrus clementina HOM05D005064 ORTHO05D006611 9.2e-310 1067.0 1053 58.2
Thecc.05G007600 Theobroma cacao HOM05D005064 ORTHO05D006611 1.6e-306 1056.2 1061 56.2
Sabra14G0144800 Salix brachista HOM05D005064 ORTHO05D006611 1.5e-299 1033.1 1079 53.8
TWI74G0298 Tripterygium wilfordii HOM05D005064 ORTHO05D006611 1.2e-298 1030.0 1067 54.4
CANSAT35G0044 Cannabis sativa HOM05D005064 ORTHO05D006611 6.8e-297 1024.2 1057 55.6
CSS0042379 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.4e-296 1021.9 1082 54.3
Prupe.4G287200 Prunus persica HOM05D005064 ORTHO05D006611 1.9e-294 1016.1 1052 56.8
Gorai.012G119100 Gossypium raimondii HOM05D005064 ORTHO05D006611 4.1e-294 1015.0 1095 52.7
RcHm_v2.0_Chr3g0484931 Rosa chinensis HOM05D005064 ORTHO05D006611 7.8e-293 1010.7 894 59.8
Lj2C68T2 Lonicera japonica HOM05D005064 ORTHO05D006611 1.1e-291 1006.9 1052 54.8
TAR633G1737 Trochodendron aralioides HOM05D005064 ORTHO05D006611 2.1e-290 1002.7 1073 54.1
Cpa.g.sc5.230 Carica papaya HOM05D005064 ORTHO05D006611 8.1e-290 1000.7 1051 52.9
Gohir.D04G135300 Gossypium hirsutum HOM05D005064 ORTHO05D006611 1.6e-285 986.5 991 55.1
Gohir.A04G095400 Gossypium hirsutum HOM05D005064 ORTHO05D006611 2.3e-284 982.6 991 54.8
Rhsim05G0225400 Rhododendron simsii HOM05D005064 ORTHO05D006611 7.6e-280 967.6 1061 53.6
vmacro04273 Vaccinium macrocarpon HOM05D005064 ORTHO05D006611 1.7e-276 956.4 1080 53.2
FAN23G3111 Fragaria x ananassa HOM05D005064 ORTHO05D006611 1.5e-275 953.4 1153 49.1
Nn2g11003 Nelumbo nucifera HOM05D005064 ORTHO05D006611 1.5e-275 953.4 1149 50.8
FvH4_1g25820 Fragaria vesca HOM05D005064 ORTHO05D006611 1.9e-275 953.0 870 58.7
MD01G1008700 Malus domestica HOM05D005064 ORTHO05D006611 5.6e-275 951.4 1170 49.3
COL.COLO4_14461 Corchorus olitorius HOM05D005064 ORTHO05D006611 4.0e-273 945.3 899 55.4
Eucgr.K02953 Eucalyptus grandis HOM05D005064 ORTHO05D006611 5.8e-272 941.4 1064 51.8
FAN19G0240 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.0e-269 931.4 906 56.2
AT5G01630 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.7e-268 929.9 1047 49.9
Carub.0006s0020 Capsella rubella HOM05D005064 ORTHO05D006611 4.0e-265 918.7 1054 49.7
THA.LOC104816179 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 2.2e-263 912.9 1124 48.4
Thhalv10012491m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 1.9e-262 909.8 1059 49.0
MSTRG.18977 Avicennia marina HOM05D005064 ORTHO05D006611 1.0e-260 904.0 1086 48.8
CARHR211980 Cardamine hirsuta HOM05D005064 ORTHO05D006611 3.9e-260 902.1 1055 48.2
AL6G10420 Arabidopsis lyrata HOM05D005064 ORTHO05D006611 1.9e-259 899.8 1103 47.1
Cc06_g00810 Coffea canephora HOM05D005064 ORTHO05D006611 1.9e-259 899.8 1041 49.2
Sopen02g008440 Solanum pennellii HOM05D005064 ORTHO05D006611 5.6e-259 898.3 1068 48.4
Lj6g0012785 Lotus japonicus HOM05D005064 ORTHO05D006611 3.7e-258 895.6 1029 49.8
Ca_16367_v3 Cicer arietinum L. HOM05D005064 ORTHO05D006611 6.2e-258 894.8 1018 49.9
HanXRQChr15g0486851 Helianthus annuus HOM05D005064 ORTHO05D006611 9.9e-256 887.5 1029 49.3
AUR62030766 Chenopodium quinoa HOM05D005064 ORTHO05D006611 8.4e-255 884.4 1064 49.6
THA.LOC104798645 Tarenaya hassleriana HOM05D005064 ORTHO05D006611 1.4e-254 883.6 1099 47.0
AUR62030526 Chenopodium quinoa HOM05D005064 ORTHO05D006611 1.9e-254 883.2 1064 49.3
Aa31sc411G40 Aethionema arabicum HOM05D005064 ORTHO05D006611 2.5e-254 882.9 1060 47.9
Lalb_Chr22g0360891 Lupinus albus HOM05D005064 ORTHO05D006611 3.2e-254 882.5 1052 48.2
Aa31LG1G23250 Aethionema arabicum HOM05D005064 ORTHO05D006611 9.3e-254 880.9 1108 46.8
CiPaw.09G214500 Carya illinoinensis HOM05D005064 ORTHO05D006611 6.0e-253 878.2 647 67.4
Migut.J00101 Erythranthe guttata HOM05D005064 ORTHO05D006611 3.9e-252 875.5 1082 47.9
Psat5g101280 Pisum sativum HOM05D005064 ORTHO05D006611 5.1e-252 875.2 905 52.4
CAN.G989.4 Capsicum annuum HOM05D005064 ORTHO05D006611 6.7e-252 874.8 1029 49.2
Thhalv10027627m.g Eutrema salsugineum HOM05D005064 ORTHO05D006611 8.7e-252 874.4 1023 47.8
Medtr3g083250 Medicago truncatula HOM05D005064 ORTHO05D006611 5.6e-251 871.7 985 50.1
Sp7g05130 Schrenkiella parvula HOM05D005064 ORTHO05D006611 1.1e-249 867.5 1044 47.0
Nitab4.5_0010437g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 1.4e-249 867.1 1099 47.6
EL10Ac5g12491 Beta vulgaris HOM05D005064 ORTHO05D006611 3.1e-249 865.9 1061 48.6
TPR.G19329 Trifolium pratense HOM05D005064 ORTHO05D006611 7.6e-248 861.3 932 51.6
Aqoxy2G00779 Aquilegia oxysepala HOM05D005064 ORTHO05D006611 1.3e-247 860.5 931 50.9
BcaB01g06242 Brassica carinata HOM05D005064 ORTHO05D006611 1.7e-247 860.1 1058 47.3
Peaxi162Scf00744g00354 Petunia axillaris HOM05D005064 ORTHO05D006611 1.1e-246 857.4 1086 47.5
VMungo0540G1710 Vigna mungo HOM05D005064 ORTHO05D006611 2.5e-246 856.3 897 52.0
arahy.Tifrunner.gnm1.ann1.168PWC Arachis hypogaea HOM05D005064 ORTHO05D006611 1.2e-245 854.0 1060 47.3
ECA234G3016 Erigeron canadensis HOM05D005064 ORTHO05D006611 1.6e-245 853.6 1051 47.7
arahy.Tifrunner.gnm1.ann1.XPQW08 Arachis hypogaea HOM05D005064 ORTHO05D006611 7.9e-245 851.3 1065 47.1
Hund25531 Selenicereus undatus HOM05D005064 ORTHO05D006611 1.3e-244 850.5 1086 46.6
AT4G00020 Arabidopsis thaliana HOM05D005064 ORTHO05D006611 1.6e-242 843.6 1041 49.2
Glyma.13G010700 Glycine max HOM05D005064 ORTHO05D006611 3.1e-241 839.3 903 51.6
PSO339G1571 Papaver somniferum HOM05D005064 ORTHO05D006611 4.5e-240 835.5 1183 44.8
BraA03t09408Z Brassica rapa HOM05D005064 ORTHO05D006611 5.9e-240 835.1 1116 44.6
FAN28G2142 Fragaria x ananassa HOM05D005064 ORTHO05D006611 5.9e-240 835.1 1171 44.3
BolC3t12595H Brassica oleracea HOM05D005064 ORTHO05D006611 8.5e-239 831.2 1058 45.7
A03p00180 Brassica napus HOM05D005064 ORTHO05D006611 3.2e-238 829.3 1049 46.6
A05p16640 Brassica napus HOM05D005064 ORTHO05D006611 1.2e-237 827.4 1056 45.7
C06p17140 Brassica napus HOM05D005064 ORTHO05D006611 1.0e-236 824.3 1059 46.1
SGA_v2.0_scaffold85G26687 Striga asiatica HOM05D005064 ORTHO05D006611 6.7e-236 821.6 1085 45.9
BraA05t20569Z Brassica rapa HOM05D005064 ORTHO05D006611 7.4e-235 818.1 1027 46.3
Lsat_1_v5_gn_5_149520 Lactuca sativa HOM05D005064 ORTHO05D006611 7.4e-235 818.1 1057 46.1
C03p00330 Brassica napus HOM05D005064 ORTHO05D006611 2.2e-231 806.6 1043 45.1
BcaB01g06109 Brassica carinata HOM05D005064 ORTHO05D006611 5.0e-231 805.4 1043 45.2
BcaC08g44292 Brassica carinata HOM05D005064 ORTHO05D006611 5.0e-231 805.4 1074 44.5
BolC6t36909H Brassica oleracea HOM05D005064 ORTHO05D006611 6.1e-229 798.5 1079 44.7
PSO801G0135 Papaver somniferum HOM05D005064 ORTHO05D006611 8.2e-226 788.1 1185 43.3
Sp6g40890 Schrenkiella parvula HOM05D005064 ORTHO05D006611 2.5e-222 776.5 706 56.5
ATR0594G137 Amborella trichopoda HOM05D005064 ORTHO05D006611 5.5e-222 775.4 1125 42.5
SalBow5G0042 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.9e-215 753.1 1075 44.2
SalBow5G1296 Salvia bowleyana HOM05D005064 ORTHO05D006611 2.9e-215 753.1 1075 44.2
MBI03_g13049_MAGBIO Magnolia biondii HOM05D005064 ORTHO05D006611 1.0e-212 744.6 630 59.0
SHI12869 Sapria himalayana HOM05D005064 ORTHO05D006611 2.0e-208 730.3 998 44.9
Ah.12g059020 Amaranthus hybridus HOM05D005064 ORTHO05D006611 7.7e-208 728.4 979 46.0
HPP92_013842 Vanilla planifolia HOM05D005064 ORTHO05D006611 1.9e-206 723.8 896 47.1
BcaB04g17743 Brassica carinata HOM05D005064 ORTHO05D006611 1.7e-202 710.7 976 46.4
Os01g0164800 Oryza sativa ssp. japonica HOM05D005064 ORTHO05D006611 3.7e-202 709.5 1067 41.5
DCAR_030962 Daucus carota HOM05D005064 ORTHO05D008158 2.9e-199 699.9 982 43.8
Zm00001eb419130 Zea mays HOM05D005064 ORTHO05D006611 2.5e-190 670.2 1051 40.6
HPP92_013858 Vanilla planifolia HOM05D005064 ORTHO05D006611 9.5e-190 668.3 638 54.9
Medtr0191s0030 Medicago truncatula HOM05D005064 ORTHO05D006611 8.9e-188 661.8 801 48.8
CDE04G0109 Ceratophyllum demersum HOM05D005064 ORTHO05D006611 3.2e-185 653.3 1047 42.9
Medtr6g033115 Medicago truncatula HOM05D005064 ORTHO05D006611 1.7e-175 620.9 640 53.3
SEGI_30642 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 3.1e-172 610.1 947 40.3
Sc07g0001460 Simmondsia chinensis HOM05D005064 ORTHO05D006611 8.9e-164 582.0 785 46.4
CSS0001431 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 3.6e-157 560.1 513 57.3
FAN26G2490 Fragaria x ananassa HOM05D005064 ORTHO05D006611 6.0e-152 542.7 426 63.8
Nitab4.5_0001246g0050 Nicotiana tabacum HOM05D005064 ORTHO05D006611 5.6e-150 536.2 768 43.9
Solyc02g050200.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 7.9e-144 515.8 733 44.1
Oeu026978.1 Olea europaea HOM05D005064 ORTHO05D006611 5.6e-142 509.6 676 45.3
Phvul.006G005800 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 7.9e-136 489.2 671 45.5
AagrBONN_evm.TU.Sc2ySwM_362.1800 Anthoceros agrestis HOM05D005064 ORTHO05D006611 3.2e-121 440.7 693 38.4
Haze_21131 Corylus avellana HOM05D005064 ORTHO05D006611 6.3e-109 399.8 971 34.2
Haze_21134 Corylus avellana HOM05D005064 ORTHO05D006611 3.1e-108 397.5 971 34.1
unitig_21.g20911 Utricularia gibba HOM05D005064 ORTHO05D006611 7.7e-107 392.9 1069 32.2
Mapoly0045s0096 Marchantia polymorpha HOM05D005064 ORTHO05D006611 1.0e-106 392.5 779 35.0
Solyc02g050210.2 Solanum lycopersicum HOM05D005064 ORTHO05D006611 4.2e-105 387.1 341 57.8
Phvul.L001612 Phaseolus vulgaris HOM05D005064 ORTHO05D006611 5.9e-99 366.7 304 61.5
Oeu027330.4 Olea europaea HOM05D005064 ORTHO05D006611 2.2e-98 364.8 315 58.7
SEGI_27109 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.8e-95 355.1 752 35.2
Nitab4.5_0021252g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 2.2e-93 348.2 625 40.2
TPR.G18982 Trifolium pratense HOM05D005064 ORTHO05D006611 5.7e-86 323.6 271 57.6
Nitab4.5_0006212g0010 Nicotiana tabacum HOM05D005064 ORTHO05D006611 4.9e-85 320.5 293 56.0
SEGI_19397 Sequoiadendron giganteum HOM05D005064 ORTHO05D006611 1.3e-66 259.2 355 40.8
CBR_g19766 Chara braunii HOM05D005064 ORTHO05D000048 4.3e-65 254.2 407 36.9
CiPaw.09G214600 Carya illinoinensis HOM05D005064 ORTHO05D006611 1.3e-45 189.5 375 43.7
MCO02G178 Micromonas commoda HOM05D005064 ORTHO05D006611 1.6e-32 146.0 528 28.8
CSS0019886 Camellia sinensis var. sinensis HOM05D005064 ORTHO05D006611 2.8e-32 145.2 244 42.6
CBR_g19769 Chara braunii HOM05D005064 ORTHO05D006611 2.2e-29 135.6 294 29.3
CAN.G989.5 Capsicum annuum HOM05D005064 ORTHO05D000001 2.9e-29 135.2 270 35.2
Cre13.g566900 Chlamydomonas reinhardtii HOM05D005064 ORTHO05D006611 2.3e-26 125.6 228 34.2
Sabra16G0120100 Salix brachista HOM05D005064 ORTHO05D050424 1.1e-12 80.1 120 43.3
DCAR_028424 Daucus carota HOM05D005064 ORTHO05D006611 1.3e-08 66.6 141 35.5
DCAR_009651 Daucus carota HOM05D005064 ORTHO05D006611 1.8e-07 62.8 136 36.0
Lalb_Chr08g0236481 Lupinus albus HOM05D005064 ORTHO05D006611 7.7e-06 57.4 39 71.8


User provided reference genes

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