Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G022350 Citrullus lanatus HOM05D005074 ORTHO05D006853 0.0e+00 1484.2 748 100.0
MELO3C009144.2 Cucumis melo HOM05D005074 ORTHO05D006853 0.0e+00 1330.5 748 89.3
CsaV3_3G033540 Cucumis sativus L. HOM05D005074 ORTHO05D006853 0.0e+00 1328.2 748 89.6
Sed0022379 Sechium edule HOM05D005074 ORTHO05D006853 0.0e+00 1222.2 738 84.3
RcHm_v2.0_Chr3g0462521 Rosa chinensis HOM05D005074 ORTHO05D006853 5.6e-285 984.2 757 67.2
QL08p015889 Quercus lobata HOM05D005074 ORTHO05D006853 4.8e-284 981.1 761 66.2
MD04G1160300 Malus domestica HOM05D005074 ORTHO05D006853 1.0e-278 963.4 760 66.4
TWI74G0571 Tripterygium wilfordii HOM05D005074 ORTHO05D006853 1.8e-278 962.6 766 64.2
Prupe.6G280900 Prunus persica HOM05D005074 ORTHO05D006853 2.3e-278 962.2 761 66.1
Ciclev10011130m.g Citrus clementina HOM05D005074 ORTHO05D006853 8.7e-278 960.3 760 64.6
FvH4_6g11090 Fragaria vesca HOM05D005074 ORTHO05D006853 3.3e-277 958.4 758 66.2
Cfa017171 Carpinus fangiana HOM05D005074 ORTHO05D006853 3.1e-275 951.8 762 65.6
CSS0046053 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 1.5e-274 949.5 761 64.8
Potri.016G120200 Populus trichocarpa HOM05D005074 ORTHO05D006853 1.5e-274 949.5 766 65.4
Dinv13134 Davidia involucrata HOM05D005074 ORTHO05D006853 5.8e-274 947.6 757 65.4
FAN02G3586 Fragaria x ananassa HOM05D005074 ORTHO05D006853 5.8e-274 947.6 768 64.8
Haze_21033 Corylus avellana HOM05D005074 ORTHO05D006853 7.6e-274 947.2 763 65.8
CSS0047541 Camellia sinensis var. sinensis HOM05D005074 ORTHO05D006853 2.9e-273 945.3 761 64.5
FAN05G5223 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.9e-273 944.5 768 65.0
FAN14G3962 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.2e-272 941.8 768 65.0
CiPaw.10G158300 Carya illinoinensis HOM05D005074 ORTHO05D006853 6.0e-271 937.6 759 65.2
Sabra16G0116100 Salix brachista HOM05D005074 ORTHO05D006853 3.3e-269 931.8 760 64.2
TAR633G0154 Trochodendron aralioides HOM05D005074 ORTHO05D006853 2.5e-264 915.6 735 64.5
Actinidia29087 Actinidia chinensis HOM05D005074 ORTHO05D006853 5.5e-264 914.4 754 63.8
Ca_13410_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 7.9e-263 910.6 756 61.8
Ca_13419_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 7.9e-263 910.6 756 61.8
Lalb_Chr07g0191391 Lupinus albus HOM05D005074 ORTHO05D006853 1.8e-262 909.4 758 62.0
Glyma.01G117800 Glycine max HOM05D005074 ORTHO05D006853 3.0e-262 908.7 759 63.5
Lj5g0028092 Lotus japonicus HOM05D005074 ORTHO05D006853 3.0e-262 908.7 764 63.1
arahy.Tifrunner.gnm1.ann1.N71AR0 Arachis hypogaea HOM05D005074 ORTHO05D006853 1.9e-261 906.0 762 62.9
CANSAT35G1267 Cannabis sativa HOM05D005074 ORTHO05D006853 4.3e-261 904.8 768 62.6
Medtr1g024820 Medicago truncatula HOM05D005074 ORTHO05D006853 4.3e-261 904.8 752 62.9
Hma1.2p1_0501F.1_g167650 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 1.8e-259 899.4 722 64.7
Psat6g003720 Pisum sativum HOM05D005074 ORTHO05D006853 3.1e-259 898.7 757 61.2
Duzib128G0037 Durio zibethinus HOM05D005074 ORTHO05D006853 1.3e-257 893.3 751 62.5
Nn2g10923 Nelumbo nucifera HOM05D005074 ORTHO05D006853 1.7e-257 892.9 733 64.0
VMungo0331G1905 Vigna mungo HOM05D005074 ORTHO05D006853 5.0e-257 891.3 758 62.7
PGR031G0257 Punica granatum HOM05D005074 ORTHO05D006853 6.5e-257 891.0 751 63.5
Nitab4.5_0012964g0020 Nicotiana tabacum HOM05D005074 ORTHO05D006853 1.1e-256 890.2 739 63.2
TPR.G34365 Trifolium pratense HOM05D005074 ORTHO05D006853 1.9e-256 889.4 751 62.1
Lj2C71T3 Lonicera japonica HOM05D005074 ORTHO05D006853 3.2e-256 888.6 734 63.8
Rhsim05G0219800 Rhododendron simsii HOM05D005074 ORTHO05D006853 4.2e-256 888.3 754 62.6
PGSC0003DMG400006257 Solanum tuberosum HOM05D005074 ORTHO05D006853 4.2e-256 888.3 743 64.1
Solyc09g005100.4 Solanum lycopersicum HOM05D005074 ORTHO05D006853 5.5e-256 887.9 747 63.6
Nitab4.5_0000195g0210 Nicotiana tabacum HOM05D005074 ORTHO05D006853 9.4e-256 887.1 738 63.4
MBI03_g18944_MAGBIO Magnolia biondii HOM05D005074 ORTHO05D006853 4.6e-255 884.8 780 59.7
Phvul.010G073200 Phaseolus vulgaris HOM05D005074 ORTHO05D006853 4.6e-255 884.8 759 62.2
Sopen09g001080 Solanum pennellii HOM05D005074 ORTHO05D006853 1.0e-254 883.6 741 63.3
EL10Ac5g12524 Beta vulgaris HOM05D005074 ORTHO05D006853 1.8e-254 882.9 763 61.2
GSVIVG01003941001 Vitis vinifera HOM05D005074 ORTHO05D006853 1.1e-253 880.2 743 61.6
AUR62030501 Chenopodium quinoa HOM05D005074 ORTHO05D006853 2.0e-253 879.4 758 60.6
Peaxi162Scf01132g00134 Petunia axillaris HOM05D005074 ORTHO05D006853 9.7e-253 877.1 719 64.3
Cc06_g01060 Coffea canephora HOM05D005074 ORTHO05D006853 4.5e-250 868.2 782 59.3
Gohir.A04G093700 Gossypium hirsutum HOM05D005074 ORTHO05D006853 5.0e-249 864.8 748 61.6
Gohir.D04G133000 Gossypium hirsutum HOM05D005074 ORTHO05D006853 1.1e-248 863.6 748 61.5
CAN.G41.5 Capsicum annuum HOM05D005074 ORTHO05D006853 1.9e-248 862.8 746 60.7
PSO384G2802 Papaver somniferum HOM05D005074 ORTHO05D006853 1.9e-248 862.8 730 61.8
Gorai.012G116900 Gossypium raimondii HOM05D005074 ORTHO05D006853 3.2e-248 862.1 739 61.7
Ah.02g115540 Amaranthus hybridus HOM05D005074 ORTHO05D006853 5.5e-248 861.3 756 60.4
PSO339G4313 Papaver somniferum HOM05D005074 ORTHO05D006853 2.1e-247 859.4 734 61.6
HanXRQChr12g0383191 Helianthus annuus HOM05D005074 ORTHO05D006853 1.7e-241 839.7 746 59.4
Aqoxy4G02460 Aquilegia oxysepala HOM05D005074 ORTHO05D006853 1.5e-240 836.6 820 56.2
THA.LOC104816650 Tarenaya hassleriana HOM05D005074 ORTHO05D006853 1.5e-240 836.6 752 58.8
DCAR_006624 Daucus carota HOM05D005074 ORTHO05D006853 4.7e-239 831.6 779 57.9
AT5G01310 Arabidopsis thaliana HOM05D005074 ORTHO05D006853 8.8e-238 827.4 728 59.8
Hund10968 Selenicereus undatus HOM05D005074 ORTHO05D006853 8.8e-238 827.4 717 60.3
Sp6g40630 Schrenkiella parvula HOM05D005074 ORTHO05D006853 2.6e-237 825.9 750 58.0
AL6G10830 Arabidopsis lyrata HOM05D005074 ORTHO05D006853 1.3e-236 823.5 731 59.6
Carub.0006s0050 Capsella rubella HOM05D005074 ORTHO05D006853 6.3e-236 821.2 747 57.8
SGA_v2.0_scaffold85G26714 Striga asiatica HOM05D005074 ORTHO05D006853 1.2e-234 817.0 729 58.8
Thecc.05G011500 Theobroma cacao HOM05D005074 ORTHO05D006853 2.0e-234 816.2 1009 48.2
MSTRG.18991 Avicennia marina HOM05D005074 ORTHO05D006853 1.0e-233 813.9 726 59.0
CARHR211670 Cardamine hirsuta HOM05D005074 ORTHO05D006853 1.5e-232 810.1 725 59.3
Thhalv10012562m.g Eutrema salsugineum HOM05D005074 ORTHO05D006853 2.7e-231 805.8 780 55.9
Aa31LG1G22940 Aethionema arabicum HOM05D005074 ORTHO05D006853 1.4e-230 803.5 725 58.1
BolC9t60195H Brassica oleracea HOM05D005074 ORTHO05D006853 2.6e-229 799.3 736 58.3
AUR62030792 Chenopodium quinoa HOM05D005074 ORTHO05D006853 4.4e-229 798.5 720 59.2
BraA10t45403Z Brassica rapa HOM05D005074 ORTHO05D006853 7.5e-229 797.7 744 56.7
A10p33710 Brassica napus HOM05D005074 ORTHO05D006853 1.3e-228 797.0 744 56.6
C09p74610 Brassica napus HOM05D005074 ORTHO05D006853 1.1e-227 793.9 747 57.2
Atru.chr8.2282 Acer truncatum HOM05D005074 ORTHO05D006853 5.9e-226 788.1 654 63.5
Migut.J00131 Erythranthe guttata HOM05D005074 ORTHO05D006853 8.0e-223 777.7 738 56.1
Lsat_1_v5_gn_8_100780 Lactuca sativa HOM05D005074 ORTHO05D006853 2.3e-222 776.2 744 57.5
SalBow5G0276 Salvia bowleyana HOM05D005074 ORTHO05D006853 5.2e-222 775.0 738 56.8
SalBow5G3519 Salvia bowleyana HOM05D005074 ORTHO05D006853 8.8e-222 774.2 740 56.6
ATR0716G066 Amborella trichopoda HOM05D005074 ORTHO05D006853 5.7e-221 771.5 870 48.7
Zm00001eb013510 Zea mays HOM05D005074 ORTHO05D006853 9.2e-219 764.2 772 53.9
COL.COLO4_14500 Corchorus olitorius HOM05D005074 ORTHO05D006853 1.0e-217 760.8 961 47.2
Eucgr.A00552 Eucalyptus grandis HOM05D005074 ORTHO05D006853 1.3e-212 743.8 644 60.7
vmacro20302 Vaccinium macrocarpon HOM05D005074 ORTHO05D006853 1.7e-212 743.4 746 56.6
BcaC06g31973 Brassica carinata HOM05D005074 ORTHO05D006853 1.8e-211 740.0 750 54.0
unitig_27.g24848 Utricularia gibba HOM05D005074 ORTHO05D006853 7.8e-210 734.6 744 52.6
HPP92_025102 Vanilla planifolia HOM05D005074 ORTHO05D006853 1.9e-208 729.9 702 55.1
CDE08G0259 Ceratophyllum demersum HOM05D005074 ORTHO05D006853 3.0e-201 706.1 773 50.3
Manes.09G106200 Manihot esculenta HOM05D005074 ORTHO05D006853 8.1e-199 698.0 599 60.4
FAN09G4669 Fragaria x ananassa HOM05D005074 ORTHO05D006853 4.6e-186 655.6 606 59.9
ECA236G3605 Erigeron canadensis HOM05D005074 ORTHO05D006853 4.6e-178 629.0 605 57.5
Hma1.2p1_0501F.1_g167660 Hydrangea macrophylla HOM05D005074 ORTHO05D006853 2.8e-175 619.8 479 67.2
SMO119G0484 Selaginella moellendorffii HOM05D005074 ORTHO05D006853 8.1e-175 618.2 712 48.6
Sc22g0002590 Simmondsia chinensis HOM05D005074 ORTHO05D006853 9.0e-174 614.8 560 60.0
Cpa.g.sc120.24 Carica papaya HOM05D005074 ORTHO05D006853 1.9e-168 597.0 758 45.9
Mapoly0120s0055 Marchantia polymorpha HOM05D005074 ORTHO05D006853 3.9e-161 572.8 765 44.3
Pp3c11_18160 Physcomitrium patens HOM05D005074 ORTHO05D006853 1.1e-158 564.7 784 41.7
arahy.Tifrunner.gnm1.ann1.W8IS2K Arachis hypogaea HOM05D005074 ORTHO05D006853 3.0e-129 466.8 385 61.3
Os03g0293400 Oryza sativa ssp. japonica HOM05D005074 ORTHO05D006853 4.5e-125 453.0 391 59.3
Aa31LG1G22950 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.3e-111 406.0 656 39.9
AagrBONN_evm.TU.Sc2ySwM_362.194 Anthoceros agrestis HOM05D005074 ORTHO05D006853 9.5e-107 392.1 469 48.4
Aa31LG8G1910 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.0e-101 374.4 471 43.9
Aa31LG1G22960 Aethionema arabicum HOM05D005074 ORTHO05D006853 6.6e-100 369.4 478 44.6
Oeu033574.2 Olea europaea HOM05D005074 ORTHO05D006853 6.2e-90 336.3 725 34.9
SHI12858 Sapria himalayana HOM05D005074 ORTHO05D006853 8.3e-87 325.9 320 55.3
FAN09G1779 Fragaria x ananassa HOM05D005074 ORTHO05D006853 2.4e-86 324.3 331 57.1
FAN09G0802 Fragaria x ananassa HOM05D005074 ORTHO05D006853 3.3e-83 313.9 263 65.8
FAN09G0145 Fragaria x ananassa HOM05D005074 ORTHO05D006853 7.5e-80 302.8 298 58.7
CBR_g45475 Chara braunii HOM05D005074 ORTHO05D006853 1.1e-78 298.9 1021 26.9
Oeu063389.1 Olea europaea HOM05D005074 ORTHO05D006853 2.4e-70 271.2 195 67.7
RcHm_v2.0_Chr3g0462501 Rosa chinensis HOM05D005074 ORTHO05D006853 2.2e-63 248.1 280 52.1
MD12G1172800 Malus domestica HOM05D005074 ORTHO05D006853 1.1e-59 235.7 230 57.0
MD05G1095500 Malus domestica HOM05D005074 ORTHO05D006853 4.8e-58 230.3 160 68.8
Duzib093G1335 Durio zibethinus HOM05D005074 ORTHO05D006853 6.9e-57 226.5 368 39.7
BcaC06g31962 Brassica carinata HOM05D005074 ORTHO05D006853 2.3e-52 211.5 162 61.1
Aa31sc2673G10 Aethionema arabicum HOM05D005074 ORTHO05D006853 5.1e-52 210.3 298 37.9
Cre06.g297904 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D006853 8.1e-50 203.0 718 27.3
Glyma.U000401 Glycine max HOM05D005074 ORTHO05D006853 4.6e-45 187.2 124 71.0
AagrBONN_evm.TU.Sc2ySwM_344.4419 Anthoceros agrestis HOM05D005074 ORTHO05D006853 3.9e-44 184.1 169 52.1
Glyma.U000501 Glycine max HOM05D005074 ORTHO05D006853 2.4e-33 148.3 173 53.8
Ca_06765_v3 Cicer arietinum L. HOM05D005074 ORTHO05D006853 6.7e-28 130.2 167 47.3
Rhsim05G0219600 Rhododendron simsii HOM05D005074 ORTHO05D006853 3.7e-26 124.4 288 37.5
Aa31LG1G22970 Aethionema arabicum HOM05D005074 ORTHO05D006853 2.2e-23 115.2 109 54.1
Medtr1g024155 Medicago truncatula HOM05D005074 ORTHO05D006853 2.1e-21 108.6 126 54.8
Aa31sc1955G20 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.7e-21 107.5 109 48.6
Medtr8g092520 Medicago truncatula HOM05D005074 ORTHO05D006853 1.3e-18 99.4 74 67.6
MCO14G225 Micromonas commoda HOM05D005074 ORTHO05D006853 1.3e-18 99.4 190 32.6
Cre02.g079150 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 2.6e-11 75.1 159 29.6
Aa31LG1G19700 Aethionema arabicum HOM05D005074 ORTHO05D023363 3.3e-11 74.7 59 59.3
Hund10966 Selenicereus undatus HOM05D005074 ORTHO05D023363 2.2e-10 72.0 54 63.0
Cre05.g239450 Chlamydomonas reinhardtii HOM05D005074 ORTHO05D034455 8.2e-10 70.1 159 32.1
PSO675G8941 Papaver somniferum HOM05D005074 ORTHO05D006853 1.8e-09 68.9 126 31.7
Aa31LG1G19680 Aethionema arabicum HOM05D005074 ORTHO05D006853 4.5e-08 64.3 91 41.8
Aa31sc1955G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.5e-06 58.5 43 55.8
Aa31sc2119G10 Aethionema arabicum HOM05D005074 ORTHO05D023363 2.5e-06 58.5 43 55.8


User provided reference genes

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