Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG10G013500 Citrullus lanatus HOM05D007322 ORTHO05D009029 4.5e-203 711.1 369 100.0
CsaV3_3G043150 Cucumis sativus L. HOM05D007322 ORTHO05D009029 1.5e-121 440.3 234 93.6
MELO3C026617.2 Cucumis melo HOM05D007322 ORTHO05D009029 4.3e-121 438.7 234 93.2
Sed0025924 Sechium edule HOM05D007322 ORTHO05D009029 1.5e-113 413.7 227 91.2
QL10p025368 Quercus lobata HOM05D007322 ORTHO05D009029 1.2e-102 377.5 302 69.2
DCAR_025358 Daucus carota HOM05D007322 ORTHO05D009029 1.7e-101 373.6 274 68.2
Dinv24285 Davidia involucrata HOM05D007322 ORTHO05D009029 1.5e-100 370.5 228 81.1
Manes.07G016500 Manihot esculenta HOM05D007322 ORTHO05D009029 9.4e-100 367.9 227 79.7
GSVIVG01022920001 Vitis vinifera HOM05D007322 ORTHO05D009029 4.7e-99 365.5 215 82.8
MD15G1423900 Malus domestica HOM05D007322 ORTHO05D009029 4.0e-98 362.5 222 78.4
Haze_01685 Corylus avellana HOM05D007322 ORTHO05D009029 2.6e-97 359.8 222 79.7
Potri.001G211300 Populus trichocarpa HOM05D007322 ORTHO05D009029 2.6e-97 359.8 227 79.3
Cfa005519 Carpinus fangiana HOM05D007322 ORTHO05D009029 1.3e-96 357.5 223 78.9
Potri.003G019000 Populus trichocarpa HOM05D007322 ORTHO05D009029 4.8e-96 355.5 225 77.8
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 3.1e-95 352.8 228 76.8
TWI14G1121 Tripterygium wilfordii HOM05D007322 ORTHO05D009029 3.1e-95 352.8 221 79.2
Duzib132G0092 Durio zibethinus HOM05D007322 ORTHO05D009029 1.2e-94 350.9 224 76.3
Lj9C305T7 Lonicera japonica HOM05D007322 ORTHO05D009029 1.2e-94 350.9 224 76.8
Atru.chr6.627 Acer truncatum HOM05D007322 ORTHO05D009029 1.6e-94 350.5 225 76.4
RcHm_v2.0_Chr7g0222211 Rosa chinensis HOM05D007322 ORTHO05D009029 2.0e-94 350.1 223 76.7
Hma1.2p1_0217F.1_g092060 Hydrangea macrophylla HOM05D007322 ORTHO05D009029 1.0e-93 347.8 224 76.8
Glyma.08G186600 Glycine max HOM05D007322 ORTHO05D009029 3.8e-93 345.9 223 74.4
Prupe.1G569600 Prunus persica HOM05D007322 ORTHO05D009029 3.8e-93 345.9 218 77.1
Sabra03G0010600 Salix brachista HOM05D007322 ORTHO05D009029 3.8e-93 345.9 234 74.8
CSS0017191 Camellia sinensis var. sinensis HOM05D007322 ORTHO05D009029 5.0e-93 345.5 225 76.0
CiPaw.05G044700 Carya illinoinensis HOM05D007322 ORTHO05D009029 5.0e-93 345.5 217 79.3
FAN08G0261 Fragaria x ananassa HOM05D007322 ORTHO05D009029 5.0e-93 345.5 297 64.0
Gohir.A03G193600 Gossypium hirsutum HOM05D007322 ORTHO05D009029 5.0e-93 345.5 228 74.6
Gorai.005G242500 Gossypium raimondii HOM05D007322 ORTHO05D009029 1.1e-92 344.4 228 74.6
Cc02_g22530 Coffea canephora HOM05D007322 ORTHO05D009029 3.2e-92 342.8 228 73.7
Ciclev10000525m.g Citrus clementina HOM05D007322 ORTHO05D009029 4.2e-92 342.4 227 73.1
THA.LOC104816934 Tarenaya hassleriana HOM05D007322 ORTHO05D009029 9.4e-92 341.3 228 74.1
COL.COLO4_11791 Corchorus olitorius HOM05D007322 ORTHO05D009029 1.2e-91 340.9 225 74.2
Gohir.D02G214700 Gossypium hirsutum HOM05D007322 ORTHO05D009029 2.1e-91 340.1 228 73.2
Psat1g220200 Pisum sativum HOM05D007322 ORTHO05D009029 3.6e-91 339.3 226 74.3
Carub.0001s1049 Capsella rubella HOM05D007322 ORTHO05D009029 1.4e-90 337.4 229 72.9
FvH4_5g29340 Fragaria vesca HOM05D007322 ORTHO05D009029 5.2e-90 335.5 217 76.0
Thecc.02G087000 Theobroma cacao HOM05D007322 ORTHO05D009029 2.6e-89 333.2 212 76.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 5.7e-89 332.0 222 72.5
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 1.3e-88 330.9 229 71.2
Eucgr.G00576 Eucalyptus grandis HOM05D007322 ORTHO05D009029 1.3e-88 330.9 229 71.2
Phvul.006G214900 Phaseolus vulgaris HOM05D007322 ORTHO05D009029 1.3e-88 330.9 213 74.6
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 1.7e-88 330.5 220 73.2
A06p07690 Brassica napus HOM05D007322 ORTHO05D009029 2.8e-88 329.7 222 71.6
Thhalv10007006m.g Eutrema salsugineum HOM05D007322 ORTHO05D009029 2.8e-88 329.7 227 71.8
FAN18G2556 Fragaria x ananassa HOM05D007322 ORTHO05D009029 2.8e-88 329.7 217 75.6
AT1G10910 Arabidopsis thaliana HOM05D007322 ORTHO05D009029 3.7e-88 329.3 238 70.6
CARHR011130 Cardamine hirsuta HOM05D007322 ORTHO05D009029 4.8e-88 328.9 228 72.4
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 6.3e-88 328.6 227 71.8
C05p09280 Brassica napus HOM05D007322 ORTHO05D009029 6.3e-88 328.6 222 72.5
BolC5t29668H Brassica oleracea HOM05D007322 ORTHO05D009029 1.4e-87 327.4 222 72.5
AL1G21890 Arabidopsis lyrata HOM05D007322 ORTHO05D009029 1.8e-87 327.0 223 72.6
Lsat_1_v5_gn_5_105200 Lactuca sativa HOM05D007322 ORTHO05D009029 5.4e-87 325.5 227 68.3
CAN.G1021.1 Capsicum annuum HOM05D007322 ORTHO05D009029 2.0e-86 323.6 214 73.8
vmacro19889 Vaccinium macrocarpon HOM05D007322 ORTHO05D009029 4.5e-86 322.4 255 67.5
HanXRQChr10g0290611 Helianthus annuus HOM05D007322 ORTHO05D009029 1.3e-85 320.9 229 66.4
Nitab4.5_0003788g0020 Nicotiana tabacum HOM05D007322 ORTHO05D009029 1.1e-84 317.8 294 60.2
MBI04_g34119_MAGBIO Magnolia biondii HOM05D007322 ORTHO05D009029 2.5e-84 316.6 219 71.7
Nitab4.5_0000001g0160 Nicotiana tabacum HOM05D007322 ORTHO05D009029 3.3e-84 316.2 319 57.4
Aqoxy6G00206 Aquilegia oxysepala HOM05D007322 ORTHO05D009029 1.6e-83 313.9 221 69.7
Rhsim01G0008000 Rhododendron simsii HOM05D007322 ORTHO05D009029 4.0e-82 309.3 221 71.5
PGR042G2216 Punica granatum HOM05D007322 ORTHO05D009029 1.5e-81 307.4 230 66.5
Migut.B00834 Erythranthe guttata HOM05D007322 ORTHO05D009029 2.8e-80 303.1 222 68.5
Aa31LG1G3950 Aethionema arabicum HOM05D007322 ORTHO05D009029 3.5e-78 296.2 218 66.5
TPR.G2112 Trifolium pratense HOM05D007322 ORTHO05D009029 1.9e-76 290.4 196 74.0
TAR381G0036 Trochodendron aralioides HOM05D007322 ORTHO05D009029 1.9e-76 290.4 197 73.1
Lalb_Chr20g0123451 Lupinus albus HOM05D007322 ORTHO05D009029 4.3e-76 289.3 195 71.8
Nn5g28260 Nelumbo nucifera HOM05D007322 ORTHO05D009029 1.0e-74 284.6 197 71.1
Solyc11g040260.2 Solanum lycopersicum HOM05D007322 ORTHO05D009029 1.4e-74 284.3 192 72.9
Sopen11g018100 Solanum pennellii HOM05D007322 ORTHO05D009029 1.4e-74 284.3 192 72.9
Hund12986 Selenicereus undatus HOM05D007322 ORTHO05D009029 1.2e-73 281.2 255 58.0
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 2.4e-71 273.5 196 69.4
HPP92_009152 Vanilla planifolia HOM05D007322 ORTHO05D009029 1.2e-70 271.2 221 60.2
EL10Ac6g14069 Beta vulgaris HOM05D007322 ORTHO05D009029 2.0e-70 270.4 220 62.7
ATR0026G013 Amborella trichopoda HOM05D007322 ORTHO05D009029 3.1e-66 256.5 196 64.3
Peaxi162Scf00152g01437 Petunia axillaris HOM05D007322 ORTHO05D009029 3.4e-65 253.1 173 72.3
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 2.1e-62 243.8 154 78.6
VMungo0540G0689 Vigna mungo HOM05D007322 ORTHO05D009029 3.5e-62 243.0 155 72.9
SGA_v2.0_scaffold110G31316 Striga asiatica HOM05D007322 ORTHO05D009029 3.9e-61 239.6 178 69.1
Os01g0559500 Oryza sativa ssp. japonica HOM05D007322 ORTHO05D009029 2.5e-60 236.9 196 60.7
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 6.2e-59 232.3 154 76.6
Haze_01695 Corylus avellana HOM05D004517 ORTHO05D005366 8.9e-58 228.4 227 55.5
Zm00001eb162220 Zea mays HOM05D007322 ORTHO05D009029 4.4e-57 226.1 192 60.4
Sc06g0002720 Simmondsia chinensis HOM05D007322 ORTHO05D009029 3.5e-54 216.5 175 62.3
MSTRG.20302 Avicennia marina HOM05D007322 ORTHO05D009029 1.6e-51 207.6 162 65.4
ECA234G4037 Erigeron canadensis HOM05D007322 ORTHO05D009029 2.8e-51 206.8 220 50.0
Ah.03g137110 Amaranthus hybridus HOM05D007322 ORTHO05D009029 4.9e-48 196.1 198 51.5
Cpa.g.sc113.59 Carica papaya HOM05D007322 ORTHO05D009029 1.9e-36 157.5 110 70.0
Peaxi162Scf00427g00004 Petunia axillaris HOM05D007322 ORTHO05D009029 1.9e-28 131.0 127 52.8
PGSC0003DMG400008423 Solanum tuberosum HOM05D007322 ORTHO05D009029 1.4e-18 98.2 69 66.7
Oeu027802.1 Olea europaea HOM05D007322 ORTHO05D009029 1.3e-08 65.1 72 45.8
Sabra07G0055900 Salix brachista HOM05D000293 ORTHO05D009029 3.2e-07 60.5 90 37.8
Sabra17G0065200 Salix brachista HOM05D007322 ORTHO05D009029 2.1e-06 57.8 44 63.6


User provided reference genes

Program Settings