Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G020710 Citrullus lanatus HOM05D006873 ORTHO05D008668 4.2e-229 797.7 425 100.0
MELO3C002912.2 Cucumis melo HOM05D006873 ORTHO05D008668 1.9e-181 639.4 431 81.2
Sed0022830 Sechium edule HOM05D006873 ORTHO05D008668 8.2e-140 501.1 436 67.0
CsaV3_5G025700 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.7e-116 423.7 261 85.4
CiPaw.06G074700 Carya illinoinensis HOM05D006873 ORTHO05D008668 2.3e-73 280.4 425 45.2
Haze_12141 Corylus avellana HOM05D006873 ORTHO05D008668 3.0e-65 253.4 422 41.7
Nn3g16974 Nelumbo nucifera HOM05D006873 ORTHO05D008668 5.6e-64 249.2 390 40.8
Cfa009104 Carpinus fangiana HOM05D006873 ORTHO05D008668 2.1e-63 247.3 352 44.9
Glyma.02G030100 Glycine max HOM05D006873 ORTHO05D008668 4.8e-63 246.1 346 44.2
Manes.05G090700 Manihot esculenta HOM05D006873 ORTHO05D008668 5.3e-62 242.7 369 47.4
Actinidia15007 Actinidia chinensis HOM05D006873 ORTHO05D008668 6.9e-62 242.3 398 43.2
CSS0023446 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 9.0e-62 241.9 341 46.6
Lsat_1_v5_gn_8_160241 Lactuca sativa HOM05D006873 ORTHO05D008668 1.5e-61 241.1 395 43.3
Cpa.g.sc5.353 Carica papaya HOM05D006873 ORTHO05D008668 2.0e-61 240.7 441 41.0
Phvul.002G074900 Phaseolus vulgaris HOM05D006873 ORTHO05D008668 5.8e-61 239.2 365 41.6
CSS0006883 Camellia sinensis var. sinensis HOM05D006873 ORTHO05D008668 7.6e-61 238.8 338 45.9
Lj2g0015184 Lotus japonicus HOM05D006873 ORTHO05D008668 7.6e-61 238.8 402 43.3
Potri.008G146700 Populus trichocarpa HOM05D006873 ORTHO05D008668 7.6e-61 238.8 355 43.7
VMungo1215G0960 Vigna mungo HOM05D006873 ORTHO05D008668 1.7e-60 237.7 424 42.5
Atru.chr11.1966 Acer truncatum HOM05D006873 ORTHO05D008668 2.2e-60 237.3 457 39.6
Glyma.01G035700 Glycine max HOM05D006873 ORTHO05D008668 8.4e-60 235.3 337 43.6
Aqoxy3G03077 Aquilegia oxysepala HOM05D006873 ORTHO05D008668 3.2e-59 233.4 452 39.4
Lalb_Chr05g0217211 Lupinus albus HOM05D006873 ORTHO05D008668 1.6e-58 231.1 346 42.2
Medtr5g035330 Medicago truncatula HOM05D006873 ORTHO05D008668 2.7e-58 230.3 323 41.8
PGR119G2095 Punica granatum HOM05D006873 ORTHO05D008668 2.7e-58 230.3 429 40.3
Duzib248G0774 Durio zibethinus HOM05D006873 ORTHO05D008668 6.0e-58 229.2 393 42.5
Thecc.02G242900 Theobroma cacao HOM05D006873 ORTHO05D008668 6.0e-58 229.2 381 41.5
arahy.Tifrunner.gnm1.ann1.MXA56B Arachis hypogaea HOM05D006873 ORTHO05D008668 1.3e-57 228.0 401 37.7
Ciclev10031560m.g Citrus clementina HOM05D006873 ORTHO05D008668 2.3e-57 227.3 351 43.9
DCAR_026551 Daucus carota HOM05D006873 ORTHO05D008668 3.9e-57 226.5 417 40.3
MSTRG.7876 Avicennia marina HOM05D006873 ORTHO05D008668 8.7e-57 225.3 373 39.9
CANSAT01G2194 Cannabis sativa HOM05D006873 ORTHO05D008668 1.5e-56 224.6 425 42.6
TPR.G13500 Trifolium pratense HOM05D006873 ORTHO05D008668 1.9e-56 224.2 332 41.0
SalBow2G2439 Salvia bowleyana HOM05D006873 ORTHO05D008668 2.1e-55 220.7 380 38.2
THA.LOC104823082 Tarenaya hassleriana HOM05D006873 ORTHO05D008668 2.8e-55 220.3 456 37.1
SalBow2G2215 Salvia bowleyana HOM05D006873 ORTHO05D008668 6.2e-55 219.2 380 38.2
HanXRQChr08g0209031 Helianthus annuus HOM05D006873 ORTHO05D008668 6.9e-54 215.7 329 42.2
Solyc05g006070.4 Solanum lycopersicum HOM05D006873 ORTHO05D008668 6.9e-54 215.7 427 37.9
CsaV3_5G025680 Cucumis sativus L. HOM05D006873 ORTHO05D008668 1.5e-53 214.5 162 71.0
Sopen05g002090 Solanum pennellii HOM05D006873 ORTHO05D008668 4.5e-53 213.0 424 37.7
PGSC0003DMG400015575 Solanum tuberosum HOM05D006873 ORTHO05D008668 1.3e-52 211.5 396 37.6
Cc11_g14280 Coffea canephora HOM05D006873 ORTHO05D008668 2.9e-52 210.3 320 41.6
Gorai.004G149100 Gossypium raimondii HOM05D006873 ORTHO05D008668 3.8e-52 209.9 301 45.8
Prupe.1G259500 Prunus persica HOM05D006873 ORTHO05D008668 4.9e-52 209.5 450 34.4
Hund25317 Selenicereus undatus HOM05D006873 ORTHO05D008668 8.4e-52 208.8 338 42.9
Ca_04627_v3 Cicer arietinum L. HOM05D006873 ORTHO05D008668 1.1e-51 208.4 331 40.5
Gohir.A08G123000 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.1e-51 208.4 426 38.5
Gohir.D08G144400 Gossypium hirsutum HOM05D006873 ORTHO05D008668 1.1e-51 208.4 296 46.3
Sabra08G0111700 Salix brachista HOM05D006873 ORTHO05D008668 1.1e-51 208.4 332 40.7
arahy.Tifrunner.gnm1.ann1.RPT3RX Arachis hypogaea HOM05D006873 ORTHO05D009096 1.9e-51 207.6 433 35.3
GSVIVG01020168001 Vitis vinifera HOM05D006873 ORTHO05D008668 2.5e-51 207.2 246 47.2
ECA234G0329 Erigeron canadensis HOM05D000967 ORTHO05D000796 3.2e-51 206.8 336 40.5
unitig_26.g10334 Utricularia gibba HOM05D006873 ORTHO05D008668 3.2e-51 206.8 368 40.8
arahy.Tifrunner.gnm1.ann1.8WMT1Z Arachis hypogaea HOM05D006873 ORTHO05D008668 1.2e-50 204.9 425 34.4
COL.COLO4_37899 Corchorus olitorius HOM05D006873 ORTHO05D008668 1.2e-50 204.9 290 42.1
TAR622G0254 Trochodendron aralioides HOM05D006873 ORTHO05D008668 3.5e-50 203.4 342 41.2
Rhsim12G0124200 Rhododendron simsii HOM05D006873 ORTHO05D008668 4.6e-50 203.0 389 37.5
arahy.Tifrunner.gnm1.ann1.N2BTYN Arachis hypogaea HOM05D006873 ORTHO05D008668 6.0e-50 202.6 424 36.1
MD16G1087500 Malus domestica HOM05D006873 ORTHO05D008668 6.0e-50 202.6 411 36.3
QL03p062447 Quercus lobata HOM05D006873 ORTHO05D008668 6.0e-50 202.6 416 37.5
vmacro16278 Vaccinium macrocarpon HOM05D006873 ORTHO05D008668 6.0e-50 202.6 397 37.0
Peaxi162Scf00421g00062 Petunia axillaris HOM05D006873 ORTHO05D008668 1.0e-49 201.8 406 38.9
TWI18G0196 Tripterygium wilfordii HOM05D006873 ORTHO05D008668 3.0e-49 200.3 401 38.4
Nitab4.5_0009368g0020 Nicotiana tabacum HOM05D006873 ORTHO05D008668 8.7e-49 198.7 412 36.9
PSO063G4822 Papaver somniferum HOM05D006873 ORTHO05D008668 1.9e-48 197.6 493 32.9
AUR62020959 Chenopodium quinoa HOM05D006873 ORTHO05D008668 2.5e-48 197.2 330 42.7
Migut.L01442 Erythranthe guttata HOM05D006873 ORTHO05D008668 4.3e-48 196.4 366 35.2
SGA_v2.0_scaffold166G38344 Striga asiatica HOM05D006873 ORTHO05D008668 5.6e-48 196.1 390 36.9
Nitab4.5_0000257g0240 Nicotiana tabacum HOM05D006873 ORTHO05D008668 2.1e-47 194.1 332 38.0
Thhalv10018395m.g Eutrema salsugineum HOM05D006873 ORTHO05D008668 3.7e-47 193.4 405 36.3
EL10Ac6g13256 Beta vulgaris HOM05D006873 ORTHO05D008668 6.2e-47 192.6 417 36.0
PSO832G2329 Papaver somniferum HOM05D006873 ORTHO05D008668 8.2e-47 192.2 418 34.7
Eucgr.B02558 Eucalyptus grandis HOM05D006873 ORTHO05D008668 1.4e-46 191.4 340 41.5
Sc11g0001350 Simmondsia chinensis HOM05D006873 ORTHO05D008668 1.4e-46 191.4 324 39.8
CARHR063320 Cardamine hirsuta HOM05D006873 ORTHO05D008668 5.3e-46 189.5 416 35.3
Carub.0002s1690 Capsella rubella HOM05D006873 ORTHO05D008668 7.6e-45 185.7 424 34.7
FAN07G2203 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.0e-44 185.3 528 31.4
ATR1149G030 Amborella trichopoda HOM05D006873 ORTHO05D008668 1.4e-43 181.4 334 38.6
FAN17G1454 Fragaria x ananassa HOM05D006873 ORTHO05D008668 1.4e-43 181.4 529 30.8
FvH4_4g34980 Fragaria vesca HOM05D006873 ORTHO05D008668 1.9e-43 181.0 533 30.6
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 2.5e-43 180.6 326 39.6
Sp5g25330 Schrenkiella parvula HOM05D006873 ORTHO05D008668 5.5e-43 179.5 471 34.2
A07p31180 Brassica napus HOM05D006873 ORTHO05D008668 9.3e-43 178.7 413 34.9
BraA07t30751Z Brassica rapa HOM05D006873 ORTHO05D008668 9.3e-43 178.7 413 34.9
AT1G70200 Arabidopsis thaliana HOM05D006873 ORTHO05D008668 2.1e-42 177.6 423 33.6
AL2G29500 Arabidopsis lyrata HOM05D006873 ORTHO05D008668 7.9e-42 175.6 423 33.6
Aa31LG4G10700 Aethionema arabicum HOM05D006873 ORTHO05D008668 1.0e-41 175.3 433 30.9
BolC6t38744H Brassica oleracea HOM05D006873 ORTHO05D008668 5.1e-41 172.9 414 32.6
BcaC08g45836 Brassica carinata HOM05D006873 ORTHO05D008668 8.7e-41 172.2 415 32.5
C06p36230 Brassica napus HOM05D006873 ORTHO05D008668 1.5e-40 171.4 413 32.4
RcHm_v2.0_Chr4g0444501 Rosa chinensis HOM05D006873 ORTHO05D008668 2.5e-40 170.6 441 30.8
FAN22G1812 Fragaria x ananassa HOM05D006873 ORTHO05D008668 2.8e-39 167.2 534 31.1
Psat2g111440 Pisum sativum HOM05D006873 ORTHO05D008668 6.3e-39 166.0 264 43.6
BcaB03g15534 Brassica carinata HOM05D006873 ORTHO05D008668 1.4e-38 164.9 417 32.1
MBI15_g12637_MAGBIO Magnolia biondii HOM05D006873 ORTHO05D008668 2.4e-38 164.1 265 41.9
Oeu001659.1 Olea europaea HOM05D006873 ORTHO05D008668 3.1e-38 163.7 256 41.4
Ah.04g149970 Amaranthus hybridus HOM05D006873 ORTHO05D008668 9.0e-38 162.2 416 32.2
HPP92_005898 Vanilla planifolia HOM05D006873 ORTHO05D008668 1.2e-37 161.8 334 35.0
Dinv31000 Davidia involucrata HOM05D006873 ORTHO05D008668 5.9e-37 159.5 334 38.6
Dinv31103 Davidia involucrata HOM05D006873 ORTHO05D008668 5.9e-37 159.5 334 38.6
CsaV3_5G025690 Cucumis sativus L. HOM05D006873 ORTHO05D008668 6.5e-36 156.0 115 74.8
CDE04G1917 Ceratophyllum demersum HOM05D000231 ORTHO05D008668 3.9e-33 146.7 301 37.2
SEGI_33585 Sequoiadendron giganteum HOM05D006873 ORTHO05D008668 2.0e-32 144.4 224 40.2
Zm00001eb234150 Zea mays HOM05D006873 ORTHO05D008668 4.1e-30 136.7 158 45.6
Os02g0326200 Oryza sativa ssp. japonica HOM05D006873 ORTHO05D008668 6.9e-30 136.0 154 45.5
MELO3C002913.2 Cucumis melo HOM05D006873 ORTHO05D008668 4.5e-29 133.3 104 62.5
Duzib251G0321 Durio zibethinus HOM05D006873 ORTHO05D008668 3.9e-25 120.2 172 39.5
AagrBONN_evm.TU.Sc2ySwM_362.2365 Anthoceros agrestis HOM05D006873 ORTHO05D008668 9.7e-24 115.5 287 31.7
Mapoly0001s0497 Marchantia polymorpha HOM05D006873 ORTHO05D008668 6.3e-23 112.8 351 31.1
SMO146G0062 Selaginella moellendorffii HOM05D006873 ORTHO05D008668 2.4e-22 110.9 164 36.6
CBR_g81555 Chara braunii HOM05D006873 ORTHO05D000353 2.0e-21 107.8 308 30.8
Pp3c1_41900 Physcomitrium patens HOM05D006873 ORTHO05D008668 5.0e-20 103.2 318 30.5
AUR62018459 Chenopodium quinoa HOM05D000676 ORTHO05D001458 1.1e-16 92.0 68 66.2
Oeu001660.1 Olea europaea HOM05D006873 ORTHO05D008668 2.0e-13 81.3 103 46.6
Ah.13g077500 Amaranthus hybridus HOM05D006873 ORTHO05D008668 1.2e-08 65.5 154 38.3


User provided reference genes

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