Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G010900 Citrullus lanatus HOM05D004134 ORTHO05D005240 7.5e-79 297.0 136 100.0
MELO3C022134.2 Cucumis melo HOM05D004134 ORTHO05D005240 5.0e-75 284.3 136 95.6
CsaV3_5G039580 Cucumis sativus L. HOM05D004134 ORTHO05D005240 2.5e-74 282.0 136 94.9
Sed0024495 Sechium edule HOM05D004134 ORTHO05D005240 9.9e-71 270.0 135 89.6
CiPaw.05G006000 Carya illinoinensis HOM05D004134 ORTHO05D005240 2.2e-70 268.9 136 88.2
TAR376G0266 Trochodendron aralioides HOM05D004134 ORTHO05D005240 3.7e-70 268.1 136 87.5
Actinidia26163 Actinidia chinensis HOM05D004134 ORTHO05D005240 6.4e-70 267.3 136 87.5
QL02p100166 Quercus lobata HOM05D004134 ORTHO05D005240 8.3e-70 266.9 135 87.4
CSS0009525 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 1.1e-69 266.5 136 86.0
Cfa014311 Carpinus fangiana HOM05D004134 ORTHO05D001258 1.1e-69 266.5 136 87.5
Haze_10066 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-69 266.5 136 87.5
Haze_10069 Corylus avellana HOM05D004134 ORTHO05D005240 1.1e-69 266.5 136 87.5
Dinv19398 Davidia involucrata HOM05D004134 ORTHO05D005240 1.1e-69 266.5 136 87.5
Ciclev10000416m.g Citrus clementina HOM05D004134 ORTHO05D005240 1.4e-69 266.2 136 86.0
Nn1g06242 Nelumbo nucifera HOM05D004134 ORTHO05D005240 1.9e-69 265.8 135 85.9
Potri.004G222500 Populus trichocarpa HOM05D004134 ORTHO05D005240 3.2e-69 265.0 136 86.0
Potri.003G009600 Populus trichocarpa HOM05D004134 ORTHO05D005240 4.1e-69 264.6 136 86.0
CSS0031590 Camellia sinensis var. sinensis HOM05D004134 ORTHO05D005240 5.4e-69 264.2 136 85.3
CANSAT54G0881 Cannabis sativa HOM05D004134 ORTHO05D005240 5.4e-69 264.2 136 86.8
TAR381G1335 Trochodendron aralioides HOM05D004134 ORTHO05D005240 1.2e-68 263.1 136 86.8
Eucgr.G00349 Eucalyptus grandis HOM05D004134 ORTHO05D005240 1.6e-68 262.7 136 86.0
Manes.02G223500 Manihot esculenta HOM05D004134 ORTHO05D005240 2.1e-68 262.3 136 86.0
Cc07_g19180 Coffea canephora HOM05D004134 ORTHO05D005240 3.5e-68 261.5 136 84.6
Sabra01G0168600 Salix brachista HOM05D004134 ORTHO05D005240 3.5e-68 261.5 136 83.8
COL.COLO4_33567 Corchorus olitorius HOM05D004134 ORTHO05D005240 4.6e-68 261.2 136 86.0
PGR042G0619 Punica granatum HOM05D004134 ORTHO05D005240 7.8e-68 260.4 136 85.3
Thecc.01G149600 Theobroma cacao HOM05D004134 ORTHO05D005240 1.0e-67 260.0 136 86.0
TWI23G0224 Tripterygium wilfordii HOM05D004134 ORTHO05D005240 1.3e-67 259.6 136 84.6
Hma1.2p1_0427F.1_g150710 Hydrangea macrophylla HOM05D004134 ORTHO05D005240 2.3e-67 258.8 135 83.7
Rhsim10G0097200 Rhododendron simsii HOM05D004134 ORTHO05D005240 2.3e-67 258.8 136 83.1
Glyma.12G167800 Glycine max HOM05D004134 ORTHO05D005240 3.0e-67 258.5 136 83.1
Glyma.16G003700 Glycine max HOM05D004134 ORTHO05D005240 3.0e-67 258.5 136 83.1
Nitab4.5_0000948g0120 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.0e-67 258.5 136 83.8
Nitab4.5_0002596g0050 Nicotiana tabacum HOM05D004134 ORTHO05D005240 3.0e-67 258.5 136 83.8
Gohir.A12G002500 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.9e-67 258.1 136 84.6
Gohir.D12G002200 Gossypium hirsutum HOM05D004134 ORTHO05D005240 3.9e-67 258.1 136 84.6
Gorai.008G001600 Gossypium raimondii HOM05D004134 ORTHO05D005240 3.9e-67 258.1 136 84.6
Atru.chr6.762 Acer truncatum HOM05D004134 ORTHO05D005240 5.1e-67 257.7 136 85.3
CAN.G798.51 Capsicum annuum HOM05D004134 ORTHO05D005240 5.1e-67 257.7 136 83.8
RhsimUnG0241700 Rhododendron simsii HOM05D004134 ORTHO05D005240 5.1e-67 257.7 136 82.4
Solyc01g103720.4 Solanum lycopersicum HOM05D004134 ORTHO05D005240 5.1e-67 257.7 136 83.8
Sopen01g046130 Solanum pennellii HOM05D004134 ORTHO05D005240 5.1e-67 257.7 136 83.8
Duzib147G1693 Durio zibethinus HOM05D004134 ORTHO05D005240 6.6e-67 257.3 136 83.8
Duzib264G0885 Durio zibethinus HOM05D004134 ORTHO05D005240 6.6e-67 257.3 136 85.3
PGSC0003DMG400024925 Solanum tuberosum HOM05D004134 ORTHO05D005240 6.6e-67 257.3 136 83.1
Phvul.006G218200 Phaseolus vulgaris HOM05D004134 ORTHO05D005240 1.1e-66 256.5 136 82.4
Medtr2g006020 Medicago truncatula HOM05D004134 ORTHO05D005240 1.5e-66 256.1 135 81.5
VMungo0540G2254 Vigna mungo HOM05D004134 ORTHO05D005240 2.5e-66 255.4 136 81.6
Ca_00047_v3 Cicer arietinum L. HOM05D004134 ORTHO05D005240 3.3e-66 255.0 135 81.5
Lj8C281T2 Lonicera japonica HOM05D004134 ORTHO05D005240 7.3e-66 253.8 136 82.4
Lj8C283T12 Lonicera japonica HOM05D004134 ORTHO05D005240 7.3e-66 253.8 136 82.4
Lj6g0001374 Lotus japonicus HOM05D004134 ORTHO05D005240 1.2e-65 253.1 135 80.7
Lalb_Chr21g0308271 Lupinus albus HOM05D004134 ORTHO05D005240 1.6e-65 252.7 136 80.9
THA.LOC104801417 Tarenaya hassleriana HOM05D004134 ORTHO05D005240 1.6e-65 252.7 136 81.6
Lju50A15T20 Lonicera japonica HOM05D004134 ORTHO05D005240 2.1e-65 252.3 136 81.6
Prupe.7G053600 Prunus persica HOM05D004134 ORTHO05D005240 3.6e-65 251.5 136 80.9
MSTRG.5116 Avicennia marina HOM05D004134 ORTHO05D005240 4.7e-65 251.1 136 77.9
arahy.Tifrunner.gnm1.ann1.FJZE1E Arachis hypogaea HOM05D004134 ORTHO05D005240 6.2e-65 250.8 136 80.1
arahy.Tifrunner.gnm1.ann1.PV76CP Arachis hypogaea HOM05D004134 ORTHO05D005240 6.2e-65 250.8 136 80.1
Psat0s1535g0080 Pisum sativum HOM05D004134 ORTHO05D005240 6.2e-65 250.8 135 80.7
Sc12g0003380 Simmondsia chinensis HOM05D004134 ORTHO05D005240 8.1e-65 250.4 137 83.2
SGA_v2.0_scaffold272G46372 Striga asiatica HOM05D004134 ORTHO05D005240 8.1e-65 250.4 136 79.4
HanXRQChr07g0187421 Helianthus annuus HOM05D004134 ORTHO05D005240 1.8e-64 249.2 136 79.4
SGA_v2.0_scaffold304G47905 Striga asiatica HOM05D004134 ORTHO05D005240 1.8e-64 249.2 136 78.7
MD10G1070100 Malus domestica HOM05D004134 ORTHO05D005240 2.4e-64 248.8 136 80.9
TPR.G2118 Trifolium pratense HOM05D004134 ORTHO05D005240 3.1e-64 248.4 135 80.0
SalBow8G0286 Salvia bowleyana HOM05D004134 ORTHO05D005240 6.8e-64 247.3 136 78.7
Lsat_1_v5_gn_7_76380 Lactuca sativa HOM05D004134 ORTHO05D005240 8.9e-64 246.9 136 78.7
ATR0598G203 Amborella trichopoda HOM05D004134 ORTHO05D005240 1.2e-63 246.5 134 80.6
MD05G1062400 Malus domestica HOM05D004134 ORTHO05D005240 1.2e-63 246.5 136 80.1
SalBow1G3184 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-63 246.1 136 77.9
ATR0681G369 Amborella trichopoda HOM05D004134 ORTHO05D005240 2.0e-63 245.7 134 79.9
BraA05t19492Z Brassica rapa HOM05D004134 ORTHO05D005240 3.4e-63 245.0 136 79.4
BcaB02g08952 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-63 244.2 136 78.7
BcaC02g12241 Brassica carinata HOM05D004134 ORTHO05D005240 5.8e-63 244.2 136 78.7
A05p05210 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-63 244.2 136 78.7
C04p06100 Brassica napus HOM05D004134 ORTHO05D005240 5.8e-63 244.2 136 78.7
BolC4t22236H Brassica oleracea HOM05D004134 ORTHO05D005240 5.8e-63 244.2 136 78.7
Aqoxy6G03049 Aquilegia oxysepala HOM05D004134 ORTHO05D005240 7.6e-63 243.8 136 79.4
PSO339G3543 Papaver somniferum HOM05D004134 ORTHO05D005240 1.3e-62 243.0 136 82.4
PSO384G1237 Papaver somniferum HOM05D004134 ORTHO05D005240 2.9e-62 241.9 136 81.6
vmacro19872 Vaccinium macrocarpon HOM05D004134 ORTHO05D005240 8.4e-62 240.4 125 84.8
Aa31LG3G10940 Aethionema arabicum HOM05D004134 ORTHO05D005240 1.1e-61 240.0 135 77.0
SalBow8G2435 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.4e-61 239.6 136 76.5
Hund16551 Selenicereus undatus HOM05D004134 ORTHO05D005240 1.4e-61 239.6 137 77.4
Migut.B00788 Erythranthe guttata HOM05D004134 ORTHO05D005240 2.4e-61 238.8 136 76.5
Sp4g27170 Schrenkiella parvula HOM05D004134 ORTHO05D005240 3.2e-61 238.4 137 77.4
AL4G38180 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 9.2e-61 236.9 135 78.5
AT2G40360 Arabidopsis thaliana HOM05D004134 ORTHO05D005240 9.2e-61 236.9 135 78.5
HPP92_014184 Vanilla planifolia HOM05D004134 ORTHO05D005240 1.2e-60 236.5 136 75.7
BcaC01g05160 Brassica carinata HOM05D004134 ORTHO05D005240 2.1e-60 235.7 136 76.5
A03p25010 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-60 235.7 136 76.5
C03p29850 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-60 235.7 136 76.5
BolC3t15332H Brassica oleracea HOM05D004134 ORTHO05D005240 2.1e-60 235.7 136 76.5
BraA03t11704Z Brassica rapa HOM05D004134 ORTHO05D005240 2.1e-60 235.7 136 76.5
Carub.0004s2260 Capsella rubella HOM05D004134 ORTHO05D005240 2.1e-60 235.7 135 77.8
DCAR_001836 Daucus carota HOM05D004134 ORTHO05D005240 2.1e-60 235.7 174 65.5
BcaB01g03295 Brassica carinata HOM05D004134 ORTHO05D005240 2.7e-60 235.3 136 76.5
Zm00001eb131370 Zea mays HOM05D004134 ORTHO05D005240 2.3e-59 232.3 134 75.4
Carub.0008s0866 Capsella rubella HOM05D004134 ORTHO05D005240 3.9e-59 231.5 135 76.3
PSO063G3695 Papaver somniferum HOM05D004134 ORTHO05D005240 5.1e-59 231.1 136 76.5
AL6G11500 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.6e-59 230.7 137 75.2
EL10Ac6g14818 Beta vulgaris HOM05D004134 ORTHO05D005240 1.9e-58 229.2 137 75.9
Cpa.g.sc612.1 Carica papaya HOM05D004134 ORTHO05D005240 1.9e-58 229.2 132 77.3
CARHR135440 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.3e-58 228.4 136 75.0
Prupe.6G114000 Prunus persica HOM05D004134 ORTHO05D005240 1.2e-57 226.5 142 73.9
CARHR115520 Cardamine hirsuta HOM05D004134 ORTHO05D005240 3.6e-57 224.9 137 73.0
FAN04G2346 Fragaria x ananassa HOM05D004134 ORTHO05D005240 4.7e-57 224.6 135 74.1
unitig_899.g15494 Utricularia gibba HOM05D004134 ORTHO05D005240 4.7e-57 224.6 125 76.8
AL3G45050 Arabidopsis lyrata HOM05D004134 ORTHO05D005240 6.2e-57 224.2 137 74.5
FvH4_5g21650 Fragaria vesca HOM05D004134 ORTHO05D005240 6.2e-57 224.2 135 74.1
FAN13G2390 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.2e-57 224.2 135 74.1
FAN18G3216 Fragaria x ananassa HOM05D004134 ORTHO05D005240 6.2e-57 224.2 135 74.1
RcHm_v2.0_Chr7g0209131 Rosa chinensis HOM05D004134 ORTHO05D005240 9.0e-56 220.3 135 73.3
RcHm_v2.0_Chr7g0241531 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-55 218.8 135 72.6
RcHm_v2.0_Chr7g0241541 Rosa chinensis HOM05D004134 ORTHO05D005240 2.6e-55 218.8 135 72.6
A05p05190 Brassica napus HOM05D004134 ORTHO05D005240 2.1e-52 209.1 151 64.2
Pp3c18_14790 Physcomitrium patens HOM05D004134 ORTHO05D005240 2.7e-52 208.8 135 67.4
Mapoly0025s0073 Marchantia polymorpha HOM05D004134 ORTHO05D005240 4.6e-52 208.0 135 67.4
GSVIVG01004116001 Vitis vinifera HOM05D004134 ORTHO05D005240 4.6e-52 208.0 108 87.0
CBR_g19000 Chara braunii HOM05D004134 ORTHO05D005240 1.1e-50 203.4 135 65.9
Sabra03G0005000 Salix brachista HOM05D004134 ORTHO05D005240 1.5e-50 203.0 107 85.0
SMO004G0015 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 5.6e-50 201.1 135 68.1
SMO361G0066 Selaginella moellendorffii HOM05D004134 ORTHO05D005240 5.6e-50 201.1 135 68.1
SalBow8G0646 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.2e-47 193.4 103 81.6
Oeu034147.1 Olea europaea HOM05D004134 ORTHO05D005240 2.4e-45 185.7 108 75.9
MBI13_g20493_MAGBIO Magnolia biondii HOM05D004134 ORTHO05D005240 1.8e-43 179.5 92 88.0
Haze_12759 Corylus avellana HOM05D004134 ORTHO05D005240 2.3e-43 179.1 136 66.2
Thhalv10001320m.g Eutrema salsugineum HOM05D004134 ORTHO05D005240 6.7e-43 177.6 108 72.2
MCO01G460 Micromonas commoda HOM05D004134 ORTHO05D005240 1.1e-40 170.2 134 56.7
Cre10.g417950 Chlamydomonas reinhardtii HOM05D004134 ORTHO05D005240 2.4e-40 169.1 136 58.8
Ah.09g229690 Amaranthus hybridus HOM05D004134 ORTHO05D005240 5.3e-40 167.9 113 69.0
Peaxi162Scf00011g00939 Petunia axillaris HOM05D004134 ORTHO05D005240 2.6e-39 165.6 84 86.9
PRCOL_00006650 Prasinoderma coloniale HOM05D004134 ORTHO05D005240 4.5e-39 164.9 132 53.8
Haze_26888 Corylus avellana HOM05D004134 ORTHO05D005240 2.4e-37 159.1 133 51.9
BcaC02g12245 Brassica carinata HOM05D004134 ORTHO05D005240 7.1e-37 157.5 92 76.1
Lsat_1_v5_gn_5_138060 Lactuca sativa HOM05D004134 ORTHO05D005240 9.3e-37 157.1 108 65.7
Cfa026475 Carpinus fangiana HOM05D004134 ORTHO05D005240 3.3e-34 148.7 134 50.0
C04p06060 Brassica napus HOM05D004134 ORTHO05D005240 1.0e-30 137.1 79 75.9
Ah.09g232800 Amaranthus hybridus HOM05D004134 ORTHO05D005240 1.0e-27 127.1 89 66.3
Lsat_1_v5_gn_2_109841 Lactuca sativa HOM05D004134 ORTHO05D005240 1.1e-24 117.1 72 72.2
Migut.I00323 Erythranthe guttata HOM05D004134 ORTHO05D005240 1.4e-24 116.7 75 70.7
SGA_v2.0_scaffold318G48508 Striga asiatica HOM05D001260 ORTHO05D002424 4.5e-23 111.7 85 60.0
Dinv07474 Davidia involucrata HOM05D004134 ORTHO05D005240 1.3e-17 93.6 47 85.1
AagrBONN_evm.TU.Sc2ySwM_344.2863 Anthoceros agrestis HOM05D004134 ORTHO05D005240 2.7e-12 75.9 50 62.0
SalBow8G3818 Salvia bowleyana HOM05D004134 ORTHO05D005240 1.5e-07 60.1 35 65.7


User provided reference genes

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