Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG09G004540 Citrullus lanatus HOM05D005984 ORTHO05D007754 3.2e-226 788.1 406 100.0
CsaV3_7G030600 Cucumis sativus L. HOM05D005984 ORTHO05D007754 1.3e-219 766.1 407 94.1
MELO3C023596.2 Cucumis melo HOM05D005984 ORTHO05D007754 2.3e-208 728.8 387 93.8
Sed0006813 Sechium edule HOM05D005984 ORTHO05D007754 3.0e-200 701.8 407 86.7
Sed0023953 Sechium edule HOM05D005984 ORTHO05D007754 1.9e-194 682.6 406 86.2
Cpa.g.sc44.38 Carica papaya HOM05D005984 ORTHO05D007754 4.4e-191 671.4 398 83.7
TAR629G1998 Trochodendron aralioides HOM05D005984 ORTHO05D007754 1.3e-190 669.8 357 91.0
Gorai.005G210500 Gossypium raimondii HOM05D005984 ORTHO05D007754 3.7e-190 668.3 392 84.9
Gohir.D02G187800 Gossypium hirsutum HOM05D005984 ORTHO05D007754 6.3e-190 667.5 392 84.9
Gohir.A03G164600 Gossypium hirsutum HOM05D005984 ORTHO05D007754 5.4e-189 664.5 358 89.9
CiPaw.06G060100 Carya illinoinensis HOM05D005984 ORTHO05D007754 9.1e-189 663.7 407 83.0
Cfa008738 Carpinus fangiana HOM05D005984 ORTHO05D007754 1.6e-188 662.9 399 82.7
Thecc.02G160200 Theobroma cacao HOM05D005984 ORTHO05D007754 1.0e-187 660.2 401 82.5
arahy.Tifrunner.gnm1.ann1.0C6YUW Arachis hypogaea HOM05D005984 ORTHO05D007754 4.2e-186 654.8 379 84.7
arahy.Tifrunner.gnm1.ann1.B6F48P Arachis hypogaea HOM05D005984 ORTHO05D007754 4.2e-186 654.8 379 84.7
THA.LOC104800911 Tarenaya hassleriana HOM05D005984 ORTHO05D007754 5.5e-186 654.4 357 88.5
Duzib052G0297 Durio zibethinus HOM05D005984 ORTHO05D007754 9.5e-186 653.7 356 87.6
VMungo1127G1047 Vigna mungo HOM05D005984 ORTHO05D007754 9.5e-186 653.7 357 88.5
GSVIVG01012045001 Vitis vinifera HOM05D005984 ORTHO05D007754 1.6e-185 652.9 359 88.3
PGR044G2022 Punica granatum HOM05D005984 ORTHO05D007754 2.8e-185 652.1 420 80.2
TWI53G1952 Tripterygium wilfordii HOM05D005984 ORTHO05D007754 4.7e-185 651.4 387 82.9
Glyma.11G100800 Glycine max HOM05D005984 ORTHO05D007754 1.0e-184 650.2 357 88.0
Actinidia38413 Actinidia chinensis HOM05D005984 ORTHO05D007754 1.8e-184 649.4 353 89.0
VMungo0647G2306 Vigna mungo HOM05D005984 ORTHO05D007754 1.8e-184 649.4 357 88.0
Actinidia13710 Actinidia chinensis HOM05D005984 ORTHO05D007754 5.2e-184 647.9 357 87.7
Sabra07G0060100 Salix brachista HOM05D005984 ORTHO05D007754 8.9e-184 647.1 402 80.6
Aqoxy3G04258 Aquilegia oxysepala HOM05D005984 ORTHO05D007754 1.2e-183 646.7 361 86.1
CSS0012805 Camellia sinensis var. sinensis HOM05D005984 ORTHO05D007754 1.5e-183 646.4 355 87.3
Glyma.12G026900 Glycine max HOM05D005984 ORTHO05D007754 3.4e-183 645.2 406 79.8
Potri.007G071300 Populus trichocarpa HOM05D005984 ORTHO05D007754 4.4e-183 644.8 357 88.0
Phvul.011G029800 Phaseolus vulgaris HOM05D005984 ORTHO05D007754 1.3e-182 643.3 406 81.3
Medtr4g075040 Medicago truncatula HOM05D005984 ORTHO05D007754 2.2e-182 642.5 397 80.6
TPR.G32343 Trifolium pratense HOM05D005984 ORTHO05D007754 2.2e-182 642.5 357 87.1
ATR0618G114 Amborella trichopoda HOM05D005984 ORTHO05D007754 3.7e-182 641.7 384 81.5
Haze_11755 Corylus avellana HOM05D005984 ORTHO05D007754 4.9e-182 641.3 409 80.2
Thhalv10004338m.g Eutrema salsugineum HOM05D005984 ORTHO05D007754 8.3e-182 640.6 355 85.4
PGSC0003DMG400002324 Solanum tuberosum HOM05D005984 ORTHO05D007754 8.3e-182 640.6 361 85.3
PSO782G0234 Papaver somniferum HOM05D005984 ORTHO05D007754 2.4e-181 639.0 357 87.1
COL.COLO4_19602 Corchorus olitorius HOM05D005984 ORTHO05D007754 3.1e-181 638.6 425 77.2
PSO063G6567 Papaver somniferum HOM05D005984 ORTHO05D007754 5.4e-181 637.9 357 86.8
Sopen02g003530 Solanum pennellii HOM05D005984 ORTHO05D007754 5.4e-181 637.9 363 84.6
Zm00001eb271820 Zea mays HOM05D005984 ORTHO05D007754 5.4e-181 637.9 360 85.3
Psat7g177360 Pisum sativum HOM05D005984 ORTHO05D007754 7.0e-181 637.5 357 86.6
CAN.G157.24 Capsicum annuum HOM05D005984 ORTHO05D007754 1.2e-180 636.7 361 85.9
DCAR_002576 Daucus carota HOM05D005984 ORTHO05D007754 1.2e-180 636.7 359 85.2
MSTRG.431 Avicennia marina HOM05D005984 ORTHO05D007754 1.6e-180 636.3 356 86.2
Ca_19021_v3 Cicer arietinum L. HOM05D005984 ORTHO05D007754 1.6e-180 636.3 403 79.4
Carub.0006s2091 Capsella rubella HOM05D005984 ORTHO05D007754 2.0e-180 636.0 357 84.3
Nn3g18651 Nelumbo nucifera HOM05D005984 ORTHO05D007754 4.5e-180 634.8 338 90.5
A03p46390 Brassica napus HOM05D005984 ORTHO05D007754 1.0e-179 633.6 357 84.6
C07p44410 Brassica napus HOM05D005984 ORTHO05D007754 1.0e-179 633.6 357 84.6
BraA03t13765Z Brassica rapa HOM05D005984 ORTHO05D007754 1.0e-179 633.6 357 84.6
HPP92_012878 Vanilla planifolia HOM05D005984 ORTHO05D007754 1.3e-179 633.3 355 86.5
Hma1.2p1_0122F.1_g057600 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.7e-179 632.9 403 79.2
Os06g0729650 Oryza sativa ssp. japonica HOM05D005984 ORTHO05D007754 1.7e-179 632.9 361 84.8
BolC7t44963H Brassica oleracea HOM05D005984 ORTHO05D007754 2.9e-179 632.1 357 84.3
MD13G1005900 Malus domestica HOM05D005984 ORTHO05D007754 3.3e-178 628.6 404 77.5
Cc11_g02280 Coffea canephora HOM05D005984 ORTHO05D007754 9.5e-178 627.1 414 77.1
AT5G23120 Arabidopsis thaliana HOM05D005984 ORTHO05D007754 1.2e-177 626.7 410 79.3
Lj3A850G95 Lonicera japonica HOM05D005984 ORTHO05D007754 3.6e-177 625.2 419 74.9
Ciclev10031672m.g Citrus clementina HOM05D005984 ORTHO05D007754 5.2e-176 621.3 409 79.0
CANSAT56G2432 Cannabis sativa HOM05D005984 ORTHO05D007754 3.4e-175 618.6 408 78.2
EL10Ac9g22946 Beta vulgaris HOM05D005984 ORTHO05D007754 4.4e-175 618.2 372 81.2
CDE07G0658 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 7.5e-175 617.5 411 75.2
Hund08579 Selenicereus undatus HOM05D005984 ORTHO05D007754 1.7e-174 616.3 363 83.2
Dinv11718 Davidia involucrata HOM05D005984 ORTHO05D007754 4.9e-174 614.8 399 78.7
Rhsim04G0167300 Rhododendron simsii HOM05D005984 ORTHO05D007754 5.4e-173 611.3 359 83.0
Manes.04G064200 Manihot esculenta HOM05D005984 ORTHO05D007754 7.8e-172 607.4 356 84.0
QL03p045967 Quercus lobata HOM05D005984 ORTHO05D007754 1.0e-171 607.1 459 68.2
Manes.11G108100 Manihot esculenta HOM05D005984 ORTHO05D007754 1.3e-171 606.7 355 83.7
unitig_8.g2892 Utricularia gibba HOM05D005984 ORTHO05D007754 1.3e-171 606.7 354 83.3
Prupe.1G347100 Prunus persica HOM05D005984 ORTHO05D007754 3.0e-171 605.5 393 77.1
vmacro08597 Vaccinium macrocarpon HOM05D005984 ORTHO05D007754 3.0e-171 605.5 360 81.7
ECA246G1868 Erigeron canadensis HOM05D005984 ORTHO05D007754 6.6e-171 604.4 361 80.6
Atru.chr11.1117 Acer truncatum HOM05D005984 ORTHO05D007754 1.2e-169 600.1 397 77.1
FAN12G1392 Fragaria x ananassa HOM05D005984 ORTHO05D007754 3.6e-169 598.6 403 76.2
Lsat_1_v5_gn_3_35480 Lactuca sativa HOM05D005984 ORTHO05D007754 8.0e-169 597.4 361 81.4
Lalb_Chr03g0024761 Lupinus albus HOM05D005984 ORTHO05D007754 8.0e-169 597.4 400 76.0
Lj3g0024041 Lotus japonicus HOM05D005984 ORTHO05D007754 1.1e-168 597.0 408 74.5
FvH4_4g36890 Fragaria vesca HOM05D005984 ORTHO05D007754 1.4e-168 596.7 403 75.7
RcHm_v2.0_Chr4g0446671 Rosa chinensis HOM05D005984 ORTHO05D007754 1.4e-168 596.7 402 76.4
Solyc02g014150.4 Solanum lycopersicum HOM05D005984 ORTHO05D007754 3.1e-168 595.5 340 83.8
Sc10g0006780 Simmondsia chinensis HOM05D005984 ORTHO05D007754 5.2e-168 594.7 333 86.2
Sp2g24000 Schrenkiella parvula HOM05D005984 ORTHO05D007754 1.5e-167 593.2 357 80.1
AL6G34310 Arabidopsis lyrata HOM05D005984 ORTHO05D007754 7.5e-167 590.9 357 79.8
CARHR190410 Cardamine hirsuta HOM05D005984 ORTHO05D007754 1.3e-166 590.1 357 80.1
AUR62017696 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.7e-166 589.7 355 81.4
MD16G1002000 Malus domestica HOM05D005984 ORTHO05D007754 2.2e-166 589.3 400 75.0
Aa31LG11G2610 Aethionema arabicum HOM05D005984 ORTHO05D007754 4.9e-166 588.2 357 79.0
Migut.E00699 Erythranthe guttata HOM05D005984 ORTHO05D007754 8.3e-166 587.4 411 72.5
Eucgr.J00865 Eucalyptus grandis HOM05D005984 ORTHO05D007754 8.3e-166 587.4 358 80.2
FAN07G1379 Fragaria x ananassa HOM05D005984 ORTHO05D007754 4.1e-165 585.1 429 71.6
SGA_v2.0_scaffold88G27230 Striga asiatica HOM05D005984 ORTHO05D007754 6.6e-163 577.8 376 76.9
AUR62015232 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.6e-161 572.0 327 84.1
AUR62015234 Chenopodium quinoa HOM05D005984 ORTHO05D007754 3.6e-161 572.0 327 84.1
Oeu026903.3 Olea europaea HOM05D005984 ORTHO05D007754 3.6e-161 572.0 398 73.1
SMO347G0352 Selaginella moellendorffii HOM05D005984 ORTHO05D007754 4.7e-161 571.6 354 76.0
Ah.01g001560 Amaranthus hybridus HOM05D005984 ORTHO05D007754 1.1e-160 570.5 401 73.8
HanXRQChr17g0544921 Helianthus annuus HOM05D005984 ORTHO05D007754 3.7e-158 562.0 337 81.6
HanXRQChr06g0171511 Helianthus annuus HOM05D005984 ORTHO05D007754 2.1e-156 556.2 336 81.5
SalBow2G1456 Salvia bowleyana HOM05D005984 ORTHO05D007754 4.3e-154 548.5 447 63.5
Nitab4.5_0000133g0050 Nicotiana tabacum HOM05D005984 ORTHO05D007754 2.1e-153 546.2 549 56.8
Nitab4.5_0006277g0020 Nicotiana tabacum HOM05D005984 ORTHO05D007754 1.4e-149 533.5 581 54.4
Mapoly0020s0149 Marchantia polymorpha HOM05D005984 ORTHO05D007754 7.1e-149 531.2 361 69.8
Pp3c15_7930 Physcomitrium patens HOM05D005984 ORTHO05D007754 1.7e-147 526.6 357 72.0
Pp3c9_10350 Physcomitrium patens HOM05D005984 ORTHO05D007754 5.6e-146 521.5 357 71.7
CDE04G0799 Ceratophyllum demersum HOM05D005984 ORTHO05D007754 2.0e-143 513.1 411 65.7
Peaxi162Scf00363g00317 Petunia axillaris HOM05D005984 ORTHO05D007754 6.2e-137 491.5 486 56.0
AagrBONN_evm.TU.Sc2ySwM_369.365 Anthoceros agrestis HOM05D005984 ORTHO05D007754 4.3e-122 442.2 334 66.5
FAN17G0887 Fragaria x ananassa HOM05D005984 ORTHO05D007754 2.1e-121 439.9 431 58.2
CBR_g11122 Chara braunii HOM05D005984 ORTHO05D007754 1.3e-118 430.6 332 63.3
Hma1.2p1_0122F.1_g057590 Hydrangea macrophylla HOM05D005984 ORTHO05D007754 1.7e-110 403.7 209 90.4
Dinv01185 Davidia involucrata HOM05D005984 ORTHO05D007754 1.4e-109 400.6 203 93.6
MCO05G498 Micromonas commoda HOM05D005984 ORTHO05D007754 2.7e-108 396.4 357 54.1
Cre06.g273700 Chlamydomonas reinhardtii HOM05D005984 ORTHO05D007754 4.8e-105 385.6 391 51.4
PRCOL_00000217 Prasinoderma coloniale HOM05D005984 ORTHO05D007754 1.7e-78 297.4 298 50.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.3e-61 238.8 349 37.8
MD15G1106700 Malus domestica HOM05D005984 ORTHO05D007754 8.9e-59 231.9 114 94.7
SEGI_34707 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 3.4e-58 229.9 122 87.7
C09p07860 Brassica napus HOM05D005984 ORTHO05D007754 2.9e-49 200.3 181 60.2
MD00G1043400 Malus domestica HOM05D005984 ORTHO05D007754 6.8e-43 179.1 111 78.4
BcaB04g19886 Brassica carinata HOM05D005984 ORTHO05D007754 2.4e-40 170.6 211 48.8
C09p07870 Brassica napus HOM05D005984 ORTHO05D042888 8.4e-33 145.6 103 68.9
HanXRQChr10g0318441 Helianthus annuus HOM05D005984 ORTHO05D007754 2.1e-31 141.0 69 89.9
AUR62024854 Chenopodium quinoa HOM05D005984 ORTHO05D007754 1.3e-28 131.7 73 90.4
arahy.Tifrunner.gnm1.ann1.25R2K9 Arachis hypogaea HOM05D005984 ORTHO05D014444 2.1e-28 131.0 85 75.3
arahy.Tifrunner.gnm1.ann1.B9R6EW Arachis hypogaea HOM05D005984 ORTHO05D014444 3.1e-27 127.1 84 73.8
BolC9t53702H Brassica oleracea HOM05D005984 ORTHO05D042888 1.7e-22 111.3 80 68.8
SEGI_27749 Sequoiadendron giganteum HOM05D005984 ORTHO05D007754 4.8e-20 103.2 53 86.8
MBI03_g15323_MAGBIO Magnolia biondii HOM05D002934 ORTHO05D003937 2.1e-15 87.8 43 88.4
Zm00001eb227280 Zea mays HOM05D005984 ORTHO05D007754 1.9e-13 81.3 62 67.7
Glyma.01G000174 Glycine max HOM05D036214 ORTHO05D007754 4.8e-12 76.6 43 83.7
Glyma.06G237300 Glycine max HOM05D005984 ORTHO05D007754 3.4e-10 70.5 70 57.1
Pp3c24_8290 Physcomitrium patens HOM05D013586 ORTHO05D011470 3.8e-09 67.0 38 73.7
SGA_v2.0_scaffold57G20111 Striga asiatica HOM05D005984 ORTHO05D402503 3.2e-08 63.9 39 74.4
AUR62043071 Chenopodium quinoa HOM05D003339 ORTHO05D003847 7.1e-08 62.8 67 52.2


User provided reference genes

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