Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 2.2e-199 698.7 341 100.0
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 5.5e-195 684.1 341 97.1
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 3.7e-183 644.8 324 95.4
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 2.2e-164 582.4 340 80.3
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 8.5e-164 580.5 337 80.7
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.6e-160 568.9 340 79.7
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 3.4e-160 568.5 343 79.9
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 5.7e-160 567.8 340 77.9
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 3.7e-159 565.1 335 80.0
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 2.4e-158 562.4 336 79.5
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.4e-158 561.2 337 79.2
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 7.0e-158 560.8 341 76.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.6e-157 559.7 335 78.5
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.0e-157 559.3 338 78.7
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.3e-156 556.6 342 76.9
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 2.3e-156 555.8 336 78.3
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 8.6e-156 553.9 341 77.1
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 3.3e-155 552.0 340 76.5
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 5.6e-155 551.2 337 76.0
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 9.5e-155 550.4 339 76.4
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 2.8e-154 548.9 330 77.0
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 3.6e-154 548.5 311 80.4
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 8.0e-154 547.4 336 82.1
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 2.3e-153 545.8 346 73.4
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.2e-153 544.7 308 81.5
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 5.2e-153 544.7 339 74.9
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 6.8e-153 544.3 341 77.1
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 6.8e-153 544.3 340 75.6
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.2e-152 543.5 340 75.3
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.6e-152 542.3 338 75.7
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.4e-152 542.0 341 75.4
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.4e-152 541.6 340 75.3
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.4e-152 541.6 341 74.5
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 7.5e-152 540.8 333 74.8
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 9.8e-152 540.4 341 77.1
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 1.7e-151 539.7 335 76.1
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 2.9e-151 538.9 340 75.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 3.7e-151 538.5 341 74.5
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 4.9e-151 538.1 309 81.6
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 8.3e-151 537.3 333 74.8
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 8.3e-151 537.3 336 75.3
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 3.2e-150 535.4 323 75.5
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 4.1e-150 535.0 340 73.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 4.1e-150 535.0 338 74.9
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 5.4e-150 534.6 330 76.1
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 7.0e-150 534.3 340 74.7
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 9.2e-150 533.9 339 74.0
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 1.2e-149 533.5 340 74.7
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 1.0e-148 530.4 344 73.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 1.7e-148 529.6 330 75.8
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 2.3e-148 529.3 351 72.4
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 5.0e-148 528.1 339 73.5
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 6.6e-148 527.7 349 71.9
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 1.1e-147 526.9 346 74.6
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 3.3e-147 525.4 340 71.2
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 3.3e-147 525.4 341 74.2
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 9.5e-147 523.9 338 73.4
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 1.2e-146 523.5 340 71.5
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.6e-146 523.1 340 71.8
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 2.1e-146 522.7 333 73.0
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 2.8e-146 522.3 340 71.5
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 2.8e-146 522.3 340 72.1
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 3.6e-146 521.9 341 71.0
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 3.6e-146 521.9 341 71.0
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 3.6e-146 521.9 328 73.5
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 4.7e-146 521.5 341 71.0
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 4.7e-146 521.5 341 71.0
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 4.7e-146 521.5 341 71.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 8.0e-146 520.8 328 73.2
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.0e-145 520.4 339 72.3
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 1.4e-145 520.0 342 73.7
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 4.0e-145 518.5 340 71.2
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 6.8e-145 517.7 341 73.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 6.8e-145 517.7 338 71.6
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 6.8e-145 517.7 329 73.6
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 8.9e-145 517.3 329 73.6
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 2.6e-144 515.8 341 71.3
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 3.4e-144 515.4 341 73.6
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 3.4e-144 515.4 340 70.3
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 4.4e-144 515.0 383 66.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 2.2e-143 512.7 324 74.1
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 2.9e-143 512.3 338 70.4
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 6.4e-143 511.1 334 72.5
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 8.3e-143 510.8 309 76.1
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 1.1e-142 510.4 337 71.8
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 1.2e-141 506.9 340 69.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.6e-141 506.5 337 70.0
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 1.3e-140 503.4 340 70.0
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.3e-140 502.7 331 71.0
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.6e-140 500.7 331 70.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.5e-139 500.0 300 79.0
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 2.5e-139 499.2 319 74.6
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 3.3e-139 498.8 337 69.7
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 4.3e-139 498.4 337 69.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 5.6e-139 498.0 339 72.6
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 9.5e-139 497.3 339 71.1
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.4e-137 493.4 339 72.0
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.5e-136 490.0 332 67.8
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 1.5e-136 490.0 329 71.1
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 2.6e-136 489.2 318 70.4
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 3.4e-136 488.8 318 73.6
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 1.1e-134 483.8 356 67.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 7.1e-134 481.1 342 68.7
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 9.2e-134 480.7 333 70.0
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 2.7e-133 479.2 292 75.3
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 1.9e-131 473.0 330 68.8
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 1.6e-130 469.9 318 72.0
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.1e-130 469.5 319 70.8
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 6.2e-130 468.0 307 68.4
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 3.1e-129 465.7 333 67.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 1.3e-127 460.3 357 62.5
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 2.7e-125 452.6 263 81.0
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 3.5e-125 452.2 267 80.1
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 7.8e-125 451.1 340 65.3
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 7.3e-123 444.5 283 73.9
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.2e-122 443.7 306 66.3
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.1e-122 443.0 303 67.0
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 7.6e-120 434.5 322 63.4
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.4e-118 430.3 290 69.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 2.1e-114 416.4 245 79.6
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 3.6e-114 415.6 311 65.3
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 6.2e-114 414.8 312 62.8
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 8.1e-114 414.5 335 60.6
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 2.6e-112 409.5 287 69.3
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.4e-112 409.1 403 53.3
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.0e-95 354.4 248 67.7
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 8.4e-95 351.3 222 73.4
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 2.5e-94 349.7 305 59.7
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.6e-93 347.1 255 62.4
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 1.9e-91 340.1 226 66.8
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 6.1e-85 318.5 227 64.8
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 6.1e-85 318.5 315 50.8
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 2.0e-75 287.0 304 50.0
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 3.3e-75 286.2 268 54.9
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 1.7e-74 283.9 170 78.8
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 9.7e-67 258.1 175 69.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 4.7e-61 239.2 179 64.2
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 2.8e-58 229.9 130 80.8
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 3.7e-58 229.6 141 74.5
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 7.0e-49 198.7 125 74.4
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 9.8e-35 151.8 103 68.0
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 1.9e-30 137.5 171 49.7
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-25 121.7 75 68.0
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 1.3e-23 114.8 64 79.7
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-22 110.5 77 67.5
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 7.3e-22 109.0 66 71.2
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 2.8e-21 107.1 169 37.9
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 1.4e-20 104.8 80 65.0
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 3.5e-16 90.1 55 78.2
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 5.6e-14 82.8 79 55.7
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 4.0e-12 76.6 218 28.0
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 9.9e-11 72.0 41 73.2
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 3.2e-09 67.0 95 38.9
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 7.1e-09 65.9 205 28.3
FAN23G2178 Fragaria x ananassa HOM05D002024 ORTHO05D004352 2.1e-08 64.3 155 31.6
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 1.3e-07 61.6 78 46.2
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 2.3e-07 60.8 179 30.7
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 3.0e-07 60.5 167 27.5
FAN26G3161 Fragaria x ananassa HOM05D002024 ORTHO05D004352 6.6e-07 59.3 153 30.7
AT1G54440 Arabidopsis thaliana HOM05D002024 ORTHO05D004352 8.6e-07 58.9 153 30.7
FvH4_1g28500 Fragaria vesca HOM05D002024 ORTHO05D004352 8.6e-07 58.9 153 30.7
FAN19G0777 Fragaria x ananassa HOM05D002024 ORTHO05D004352 8.6e-07 58.9 153 30.7
EL10Ac2g04414 Beta vulgaris HOM05D002024 ORTHO05D004352 1.9e-06 57.8 156 27.6
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 1.9e-06 57.8 153 30.7
CBR_g19347 Chara braunii HOM05D002024 ORTHO05D004352 2.5e-06 57.4 171 27.5
Aqoxy1G00536 Aquilegia oxysepala HOM05D002024 ORTHO05D004352 3.3e-06 57.0 152 28.3
CsaV3_4G012120 Cucumis sativus L. HOM05D002024 ORTHO05D004352 3.3e-06 57.0 152 30.9
Thhalv10023339m.g Eutrema salsugineum HOM05D002024 ORTHO05D004352 3.3e-06 57.0 148 28.4
QL07p017660 Quercus lobata HOM05D002024 ORTHO05D004352 4.3e-06 56.6 152 30.9
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 5.6e-06 56.2 152 29.6
SpUn0001_0780 Schrenkiella parvula HOM05D002024 ORTHO05D004352 5.6e-06 56.2 148 29.1
AagrBONN_evm.TU.Sc2ySwM_228.1889 Anthoceros agrestis HOM05D002024 ORTHO05D004352 7.3e-06 55.8 164 26.8
AUR62035829 Chenopodium quinoa HOM05D002024 ORTHO05D004352 7.3e-06 55.8 253 23.3
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 7.3e-06 55.8 208 26.0
SMO351G0038 Selaginella moellendorffii HOM05D002024 ORTHO05D004352 7.3e-06 55.8 161 29.2
Glyma.19G115100 Glycine max HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 29.6
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 26.3
PGR042G1807 Punica granatum HOM05D002024 ORTHO05D004352 9.6e-06 55.5 153 30.1
THA.LOC104804880 Tarenaya hassleriana HOM05D002024 ORTHO05D004352 9.6e-06 55.5 152 29.6


User provided reference genes

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