Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G014030 Citrullus lanatus HOM05D006077 ORTHO05D007499 2.4e-47 191.8 96 100.0
CsaV3_3G043520 Cucumis sativus L. HOM05D006077 ORTHO05D007499 7.0e-47 190.3 96 99.0
MELO3C025809.2 Cucumis melo HOM05D006077 ORTHO05D007499 1.6e-46 189.1 96 97.9
Sed0008411 Sechium edule HOM05D006077 ORTHO05D007499 2.9e-45 184.9 96 95.8
Sed0025034 Sechium edule HOM05D006077 ORTHO05D007499 7.2e-44 180.3 96 94.8
FvH4_6g34660 Fragaria vesca HOM05D006077 ORTHO05D007499 2.7e-38 161.8 96 79.2
FAN14G4463 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.7e-38 161.8 96 79.2
GSVIVG01016766001 Vitis vinifera HOM05D006077 ORTHO05D007499 5.9e-38 160.6 94 81.9
FAN09G3570 Fragaria x ananassa HOM05D006077 ORTHO05D007499 7.8e-38 160.2 96 78.1
Thecc.06G119600 Theobroma cacao HOM05D006077 ORTHO05D007499 1.7e-37 159.1 94 80.9
CDE11G1182 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 2.3e-37 158.7 95 76.8
RcHm_v2.0_Chr2g0145211 Rosa chinensis HOM05D006077 ORTHO05D007499 2.3e-37 158.7 96 77.1
Lj3g0010947 Lotus japonicus HOM05D006077 ORTHO05D007499 3.9e-37 157.9 94 79.8
CANSAT64G0122 Cannabis sativa HOM05D006077 ORTHO05D007499 6.6e-37 157.1 97 78.4
VMungo0331G1077 Vigna mungo HOM05D006077 ORTHO05D007499 6.6e-37 157.1 94 79.8
CANSAT64G2602 Cannabis sativa HOM05D006077 ORTHO05D007499 8.6e-37 156.8 92 79.3
Carub.0001s4344 Capsella rubella HOM05D006077 ORTHO05D007499 8.6e-37 156.8 94 79.8
Glyma.16G007300 Glycine max HOM05D006077 ORTHO05D007499 8.6e-37 156.8 94 79.8
CiPaw.02G136000 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.5e-36 156.0 95 77.9
Gohir.D04G009800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 1.5e-36 156.0 94 80.9
Gorai.012G011600 Gossypium raimondii HOM05D006077 ORTHO05D007499 1.5e-36 156.0 94 80.9
Lalb_Chr01g0013591 Lupinus albus HOM05D006077 ORTHO05D007499 1.5e-36 156.0 94 79.8
PSO421G0038 Papaver somniferum HOM05D006077 ORTHO05D007499 1.9e-36 155.6 94 79.8
Prupe.3G042200 Prunus persica HOM05D006077 ORTHO05D007499 1.9e-36 155.6 96 78.1
TAR636G2213 Trochodendron aralioides HOM05D006077 ORTHO05D007499 1.9e-36 155.6 94 79.8
CSS0011852 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 2.5e-36 155.2 94 79.8
Phvul.010G130300 Phaseolus vulgaris HOM05D006077 ORTHO05D007499 2.5e-36 155.2 94 78.7
BolC5t34043H Brassica oleracea HOM05D006077 ORTHO05D007499 3.3e-36 154.8 96 78.1
CAN.G1368.2 Capsicum annuum HOM05D006077 ORTHO05D007499 3.3e-36 154.8 87 82.8
Haze_16030 Corylus avellana HOM05D006077 ORTHO05D007499 4.3e-36 154.5 94 78.7
Rhsim08G0238900 Rhododendron simsii HOM05D006077 ORTHO05D007499 4.3e-36 154.5 94 78.7
THA.LOC104822655 Tarenaya hassleriana HOM05D006077 ORTHO05D007499 5.6e-36 154.1 94 79.8
AT1G54210 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 7.3e-36 153.7 96 79.2
ECA232G1087 Erigeron canadensis HOM05D006077 ORTHO05D007499 7.3e-36 153.7 96 77.1
Glyma.07G038100 Glycine max HOM05D006077 ORTHO05D007499 7.3e-36 153.7 94 78.7
MD09G1183900 Malus domestica HOM05D006077 ORTHO05D007499 7.3e-36 153.7 96 76.0
Sc15g0000510 Simmondsia chinensis HOM05D006077 ORTHO05D007499 7.3e-36 153.7 94 77.7
Actinidia26028 Actinidia chinensis HOM05D006077 ORTHO05D007499 9.5e-36 153.3 94 78.7
Dinv37869 Davidia involucrata HOM05D006077 ORTHO05D007499 9.5e-36 153.3 94 78.7
Gohir.A05G405800 Gossypium hirsutum HOM05D006077 ORTHO05D007499 9.5e-36 153.3 94 78.7
Manes.11G020500 Manihot esculenta HOM05D006077 ORTHO05D007499 9.5e-36 153.3 95 73.7
RcHm_v2.0_Chr5g0053491 Rosa chinensis HOM05D006077 ORTHO05D007499 1.2e-35 152.9 96 76.0
Psat4g182400 Pisum sativum HOM05D006077 ORTHO05D007499 1.6e-35 152.5 94 76.6
arahy.Tifrunner.gnm1.ann1.G5XP6S Arachis hypogaea HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 76.6
arahy.Tifrunner.gnm1.ann1.G7AU8E Arachis hypogaea HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 76.6
Hund05739 Selenicereus undatus HOM05D006077 ORTHO05D007499 2.1e-35 152.1 94 77.7
Solyc12g049310.2 Solanum lycopersicum HOM05D006077 ORTHO05D007499 2.1e-35 152.1 90 78.9
Sopen12g023790 Solanum pennellii HOM05D006077 ORTHO05D007499 2.1e-35 152.1 90 78.9
AL1G62920 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 2.8e-35 151.8 93 77.4
BcaC05g29136 Brassica carinata HOM05D006077 ORTHO05D007499 2.8e-35 151.8 94 77.7
C05p53730 Brassica napus HOM05D006077 ORTHO05D007499 2.8e-35 151.8 94 77.7
TPR.G32491 Trifolium pratense HOM05D006077 ORTHO05D007499 2.8e-35 151.8 94 75.5
TWI75G1673 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.8e-35 151.8 94 77.7
Ah.08g216780 Amaranthus hybridus HOM05D006077 ORTHO05D007499 3.6e-35 151.4 94 75.5
Aqoxy7G01092 Aquilegia oxysepala HOM05D006077 ORTHO05D007499 4.7e-35 151.0 94 77.7
PSO063G4040 Papaver somniferum HOM05D006077 ORTHO05D007499 4.7e-35 151.0 94 77.7
CARHR044580 Cardamine hirsuta HOM05D006077 ORTHO05D007499 6.1e-35 150.6 94 77.7
Migut.D00939 Erythranthe guttata HOM05D006077 ORTHO05D007499 6.1e-35 150.6 90 78.9
Peaxi162Scf00177g00511 Petunia axillaris HOM05D006077 ORTHO05D007499 6.1e-35 150.6 90 78.9
RcHm_v2.0_Chr3g0490611 Rosa chinensis HOM05D006077 ORTHO05D007499 8.0e-35 150.2 96 72.9
BcaB07g33246 Brassica carinata HOM05D006077 ORTHO05D007499 1.0e-34 149.8 94 77.7
CiPaw.01G218900 Carya illinoinensis HOM05D006077 ORTHO05D007499 1.0e-34 149.8 96 78.1
Cc00_g21000 Coffea canephora HOM05D006077 ORTHO05D007499 1.0e-34 149.8 90 77.8
Thhalv10011896m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 1.0e-34 149.8 94 77.7
ATR0598G320 Amborella trichopoda HOM05D006077 ORTHO05D007499 1.8e-34 149.1 94 75.5
BcaB06g25414 Brassica carinata HOM05D006077 ORTHO05D007499 1.8e-34 149.1 94 75.5
A05p35440 Brassica napus HOM05D006077 ORTHO05D007499 2.3e-34 148.7 94 76.6
Potri.001G169700 Populus trichocarpa HOM05D006077 ORTHO05D007499 2.3e-34 148.7 92 73.9
TWI79G1574 Tripterygium wilfordii HOM05D006077 ORTHO05D007499 2.3e-34 148.7 94 76.6
Potri.003G064300 Populus trichocarpa HOM05D006077 ORTHO05D007499 3.1e-34 148.3 94 72.3
Sp3g12220 Schrenkiella parvula HOM05D006077 ORTHO05D007499 4.0e-34 147.9 94 74.5
AL3G26170 Arabidopsis lyrata HOM05D006077 ORTHO05D007499 5.2e-34 147.5 94 74.5
Ciclev10026605m.g Citrus clementina HOM05D006077 ORTHO05D007499 5.2e-34 147.5 96 74.0
Hma1.2p1_0291F.1_g115130 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 8.9e-34 146.7 96 72.9
Carub.0003s1355 Capsella rubella HOM05D006077 ORTHO05D007499 1.2e-33 146.4 96 72.9
SalBow6G4082 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.5e-33 146.0 90 76.7
SalBow6G4389 Salvia bowleyana HOM05D006077 ORTHO05D007499 1.5e-33 146.0 90 76.7
FAN05G2137 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.0e-33 145.6 123 61.0
A06p00460 Brassica napus HOM05D006077 ORTHO05D007499 2.6e-33 145.2 104 72.1
Medtr8g020500 Medicago truncatula HOM05D006077 ORTHO05D007499 2.6e-33 145.2 84 81.0
BolC6t36071H Brassica oleracea HOM05D006077 ORTHO05D007499 1.7e-32 142.5 96 75.0
BraA06t23260Z Brassica rapa HOM05D006077 ORTHO05D007499 1.7e-32 142.5 96 75.0
Lsat_1_v5_gn_4_92920 Lactuca sativa HOM05D006077 ORTHO05D007499 1.7e-32 142.5 94 72.3
Mapoly0025s0134 Marchantia polymorpha HOM05D006077 ORTHO05D007499 2.2e-32 142.1 90 72.2
Pp3c4_29920 Physcomitrium patens HOM05D006077 ORTHO05D007499 2.2e-32 142.1 95 68.4
Hma1.2p1_0496F.1_g166240 Hydrangea macrophylla HOM05D006077 ORTHO05D007499 2.9e-32 141.7 83 78.3
BraA05t22354Z Brassica rapa HOM05D006077 ORTHO05D007499 4.9e-32 141.0 84 79.8
Eucgr.F03177 Eucalyptus grandis HOM05D006077 ORTHO05D007499 4.9e-32 141.0 94 71.3
BcaB07g33245 Brassica carinata HOM05D006077 ORTHO05D007499 2.4e-31 138.7 84 78.6
BcaC08g43600 Brassica carinata HOM05D006077 ORTHO05D007499 2.4e-31 138.7 84 78.6
C06p09980 Brassica napus HOM05D006077 ORTHO05D007499 2.4e-31 138.7 84 78.6
Zm00001eb256700 Zea mays HOM05D006077 ORTHO05D007499 3.2e-31 138.3 91 70.3
SalBow6G7202 Salvia bowleyana HOM05D006077 ORTHO05D007499 4.1e-31 137.9 93 74.2
AagrBONN_evm.TU.Sc2ySwM_228.485 Anthoceros agrestis HOM05D006077 ORTHO05D007499 7.0e-31 137.1 96 66.7
Aa31LG8G1170 Aethionema arabicum HOM05D006077 ORTHO05D007499 1.2e-30 136.3 102 66.7
Os06g0205000 Oryza sativa ssp. japonica HOM05D006077 ORTHO05D007499 1.3e-29 132.9 90 66.7
Nn4g24846 Nelumbo nucifera HOM05D006077 ORTHO05D007499 3.0e-29 131.7 85 75.3
Manes.04G144301 Manihot esculenta HOM05D006077 ORTHO05D007499 2.8e-27 125.2 81 69.1
unitig_699.g19648 Utricularia gibba HOM05D002868 ORTHO05D003477 3.1e-26 121.7 79 72.2
QL05p007703 Quercus lobata HOM05D006077 ORTHO05D007499 2.0e-25 119.0 64 81.2
SGA_v2.0_scaffold4G02063 Striga asiatica HOM05D006077 ORTHO05D007499 5.8e-25 117.5 83 71.1
vmacro15032 Vaccinium macrocarpon HOM05D006077 ORTHO05D007499 9.8e-25 116.7 74 77.0
CANSAT25G1718 Cannabis sativa HOM05D006077 ORTHO05D007499 1.7e-24 115.9 77 74.0
COL.COLO4_30761 Corchorus olitorius HOM05D006077 ORTHO05D007499 2.2e-24 115.5 74 75.7
FAN02G4125 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.9e-24 115.2 100 61.0
Duzib235G0120 Durio zibethinus HOM05D006077 ORTHO05D007499 8.3e-24 113.6 74 75.7
Thhalv10021863m.g Eutrema salsugineum HOM05D006077 ORTHO05D007499 2.4e-23 112.1 94 64.9
Duzib192G0164 Durio zibethinus HOM05D006077 ORTHO05D007499 7.1e-23 110.5 74 73.0
EL10Ac7g16407 Beta vulgaris HOM05D006077 ORTHO05D007499 9.2e-23 110.2 74 68.9
Oeu015484.1 Olea europaea HOM05D006077 ORTHO05D007499 2.1e-22 109.0 70 74.3
CBR_g34185 Chara braunii HOM05D000019 ORTHO05D001702 3.5e-22 108.2 80 62.5
Nitab4.5_0000189g0210 Nicotiana tabacum HOM05D006077 ORTHO05D007499 6.0e-22 107.5 90 63.3
Nitab4.5_0001199g0100 Nicotiana tabacum HOM05D006077 ORTHO05D007499 6.0e-22 107.5 90 63.3
RcHm_v2.0_Chr5g0040601 Rosa chinensis HOM05D006077 ORTHO05D007499 7.8e-22 107.1 71 66.2
Sabra03G0038000 Salix brachista HOM05D006077 ORTHO05D007499 7.8e-22 107.1 74 67.6
CARHR088790 Cardamine hirsuta HOM05D006077 ORTHO05D007499 1.3e-21 106.3 74 68.9
AUR62009882 Chenopodium quinoa HOM05D006077 ORTHO05D007499 5.1e-21 104.4 73 64.4
SMO364G0450 Selaginella moellendorffii HOM05D006077 ORTHO05D007499 9.5e-20 100.1 86 52.3
PRCOL_00003774 Prasinoderma coloniale HOM05D006077 ORTHO05D007499 1.6e-19 99.4 91 48.4
HPP92_019155 Vanilla planifolia HOM05D006077 ORTHO05D007499 2.8e-19 98.6 66 71.2
MCO16G375 Micromonas commoda HOM05D006077 ORTHO05D007499 1.8e-18 95.9 90 53.3
PGSC0003DMG400011604 Solanum tuberosum HOM05D006077 ORTHO05D007499 1.1e-15 86.7 46 82.6
CDE05G1235 Ceratophyllum demersum HOM05D006077 ORTHO05D007499 5.4e-15 84.3 60 70.0
Cre12.g557000 Chlamydomonas reinhardtii HOM05D006077 ORTHO05D007499 8.6e-13 77.0 91 40.7
CSS0028385 Camellia sinensis var. sinensis HOM05D006077 ORTHO05D007499 4.3e-12 74.7 53 69.8
Atru.chr1.3943 Acer truncatum HOM05D006077 ORTHO05D007499 3.6e-11 71.6 76 55.3
AT3G13970 Arabidopsis thaliana HOM05D006077 ORTHO05D007499 4.0e-10 68.2 55 58.2
DCAR_022696 Daucus carota HOM05D006077 ORTHO05D007499 5.8e-09 64.3 43 65.1
FAN24G1797 Fragaria x ananassa HOM05D006077 ORTHO05D007499 2.1e-06 55.8 40 65.0


User provided reference genes

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