Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG07G004120 Citrullus lanatus HOM05D005539 ORTHO05D006644 0.0e+00 1530.8 768 100.0
MELO3C025184.2 Cucumis melo HOM05D005539 ORTHO05D006644 0.0e+00 1416.7 819 88.4
CsaV3_5G010080 Cucumis sativus L. HOM05D005539 ORTHO05D006644 0.0e+00 1406.7 818 87.7
Sed0009998 Sechium edule HOM05D005539 ORTHO05D006644 0.0e+00 1328.2 814 83.3
Prupe.2G249200 Prunus persica HOM05D005539 ORTHO05D006644 3.6e-295 1018.1 814 64.9
Ciclev10030725m.g Citrus clementina HOM05D005539 ORTHO05D006644 4.9e-292 1007.7 814 62.4
CiPaw.01G297900 Carya illinoinensis HOM05D005539 ORTHO05D006644 1.1e-291 1006.5 812 63.8
Gohir.A10G235300 Gossypium hirsutum HOM05D005539 ORTHO05D006644 3.2e-291 1005.0 820 63.4
Thecc.10G020000 Theobroma cacao HOM05D005539 ORTHO05D006644 3.2e-291 1005.0 815 63.8
Manes.10G013600 Manihot esculenta HOM05D005539 ORTHO05D006644 5.4e-291 1004.2 813 63.2
Duzib106G1755 Durio zibethinus HOM05D005539 ORTHO05D006644 7.0e-291 1003.8 817 63.5
FvH4_7g24380 Fragaria vesca HOM05D005539 ORTHO05D006644 9.2e-291 1003.4 814 64.1
Gohir.D10G247700 Gossypium hirsutum HOM05D005539 ORTHO05D006644 2.1e-290 1002.3 820 63.5
Gorai.011G286200 Gossypium raimondii HOM05D005539 ORTHO05D006644 6.0e-290 1000.7 820 63.5
RcHm_v2.0_Chr1g0370081 Rosa chinensis HOM05D005539 ORTHO05D006644 7.8e-290 1000.3 811 64.4
COL.COLO4_25704 Corchorus olitorius HOM05D005539 ORTHO05D006644 1.7e-289 999.2 815 63.9
FAN10G0075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 2.5e-288 995.3 813 63.7
FAN01G2659 Fragaria x ananassa HOM05D005539 ORTHO05D006644 7.3e-288 993.8 812 63.7
MD01G1152200 Malus domestica HOM05D005539 ORTHO05D006644 9.5e-288 993.4 817 63.8
CANSAT56G2522 Cannabis sativa HOM05D005539 ORTHO05D006644 2.8e-287 991.9 812 62.9
GSVIVG01032835001 Vitis vinifera HOM05D005539 ORTHO05D006644 1.1e-286 989.9 819 63.1
Atru.chr12.24 Acer truncatum HOM05D005539 ORTHO05D006644 4.0e-286 988.0 815 61.6
FAN03G1336 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.2e-283 976.9 813 63.0
Potri.010G189700 Populus trichocarpa HOM05D005539 ORTHO05D006644 5.1e-281 971.1 815 62.1
TAR369G0030 Trochodendron aralioides HOM05D005539 ORTHO05D006644 3.6e-279 964.9 817 61.1
Cpa.g.sc19.181 Carica papaya HOM05D005539 ORTHO05D006644 4.7e-279 964.5 820 61.5
Hma1.2p1_0703F.1_g206530 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.3e-276 956.4 822 60.0
Potri.008G067600 Populus trichocarpa HOM05D005539 ORTHO05D006644 1.3e-276 956.4 814 61.4
Sabra10G0146300 Salix brachista HOM05D005539 ORTHO05D006644 6.4e-276 954.1 837 60.0
Eucgr.J00217 Eucalyptus grandis HOM05D005539 ORTHO05D006644 9.6e-272 940.3 818 58.6
FAN06G4384 Fragaria x ananassa HOM05D005539 ORTHO05D006644 9.0e-270 933.7 814 61.1
Lj8A68G37 Lonicera japonica HOM05D005539 ORTHO05D006644 3.8e-268 928.3 818 58.3
Phvul.001G242300 Phaseolus vulgaris HOM05D005539 ORTHO05D006644 3.9e-265 918.3 803 59.4
VMungo1383G3500 Vigna mungo HOM05D005539 ORTHO05D006644 2.5e-264 915.6 804 59.3
arahy.Tifrunner.gnm1.ann1.4ME2IF Arachis hypogaea HOM05D005539 ORTHO05D006644 1.3e-263 913.3 815 58.4
Lalb_Chr15g0084151 Lupinus albus HOM05D005539 ORTHO05D006644 1.6e-263 912.9 801 60.4
Glyma.11G229000 Glycine max HOM05D005539 ORTHO05D006644 2.1e-263 912.5 797 60.0
PGR044G2440 Punica granatum HOM05D005539 ORTHO05D006644 3.6e-263 911.8 820 59.9
Rhsim09G0176800 Rhododendron simsii HOM05D005539 ORTHO05D006644 6.9e-262 907.5 823 60.4
arahy.Tifrunner.gnm1.ann1.W7ADHZ Arachis hypogaea HOM05D005539 ORTHO05D006644 1.5e-261 906.4 815 58.2
Medtr3g070390 Medicago truncatula HOM05D005539 ORTHO05D006644 2.4e-259 899.0 799 57.8
Nn2g13702 Nelumbo nucifera HOM05D005539 ORTHO05D006644 7.1e-259 897.5 819 57.1
Ca_15119_v3 Cicer arietinum L. HOM05D005539 ORTHO05D006644 2.1e-258 896.0 794 58.9
Haze_17219 Corylus avellana HOM05D005539 ORTHO05D006644 4.6e-258 894.8 875 55.8
Peaxi162Scf00825g00123 Petunia axillaris HOM05D005539 ORTHO05D006644 6.0e-258 894.4 794 58.6
Psat5g128120 Pisum sativum HOM05D005539 ORTHO05D006644 1.3e-257 893.3 797 59.5
Lj6g0015972 Lotus japonicus HOM05D005539 ORTHO05D006644 3.0e-257 892.1 804 58.7
Actinidia29697 Actinidia chinensis HOM05D005539 ORTHO05D006644 1.9e-256 889.4 735 63.4
CAN.G1694.1 Capsicum annuum HOM05D005539 ORTHO05D006644 6.9e-254 880.9 818 57.2
EL10Ac2g04818 Beta vulgaris HOM05D005539 ORTHO05D006644 1.3e-252 876.7 824 55.7
Oeu064386.1 Olea europaea HOM05D005539 ORTHO05D006644 1.3e-252 876.7 819 56.7
Sopen11g010350 Solanum pennellii HOM05D005539 ORTHO05D006644 1.7e-252 876.3 810 56.7
AUR62012239 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-251 873.6 827 55.6
AUR62022871 Chenopodium quinoa HOM05D005539 ORTHO05D006644 1.1e-251 873.6 836 55.5
DCAR_011807 Daucus carota HOM05D005539 ORTHO05D006644 7.1e-251 870.9 810 56.3
Actinidia33928 Actinidia chinensis HOM05D005539 ORTHO05D006644 9.3e-251 870.5 819 58.1
Hund15944 Selenicereus undatus HOM05D005539 ORTHO05D006644 2.7e-250 869.0 801 55.7
Cc02_g06620 Coffea canephora HOM05D005539 ORTHO05D006644 5.1e-249 864.8 822 55.5
MSTRG.8325 Avicennia marina HOM05D005539 ORTHO05D006644 4.3e-248 861.7 815 55.2
THA.LOC104826852 Tarenaya hassleriana HOM05D005539 ORTHO05D006644 1.4e-246 856.7 814 55.4
A10p30680 Brassica napus HOM05D005539 ORTHO05D006644 9.0e-246 854.0 814 54.7
vmacro10050 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 7.6e-245 850.9 803 57.9
C09p71160 Brassica napus HOM05D005539 ORTHO05D006644 3.8e-244 848.6 814 54.5
Sc14g0005370 Simmondsia chinensis HOM05D005539 ORTHO05D006644 2.5e-243 845.9 760 56.8
Migut.F01380 Erythranthe guttata HOM05D005539 ORTHO05D006644 7.1e-243 844.3 820 55.4
PSO339G2908 Papaver somniferum HOM05D005539 ORTHO05D006644 6.7e-241 837.8 824 54.2
Carub.0006s0457 Capsella rubella HOM05D005539 ORTHO05D006644 1.9e-240 836.3 812 54.1
Aqoxy4G02586 Aquilegia oxysepala HOM05D005539 ORTHO05D006644 2.5e-240 835.9 788 55.5
BolC9t59878H Brassica oleracea HOM05D005539 ORTHO05D006644 6.3e-239 831.2 840 52.7
Lsat_1_v5_gn_2_122921 Lactuca sativa HOM05D005539 ORTHO05D006644 8.2e-239 830.9 836 53.2
AL6G15570 Arabidopsis lyrata HOM05D005539 ORTHO05D006644 1.1e-238 830.5 813 53.5
AT5G05680 Arabidopsis thaliana HOM05D005539 ORTHO05D006644 1.4e-238 830.1 813 53.5
Thhalv10012715m.g Eutrema salsugineum HOM05D005539 ORTHO05D006644 1.8e-238 829.7 812 53.4
Sp6g37210 Schrenkiella parvula HOM05D005539 ORTHO05D006644 4.1e-238 828.6 812 53.4
HanXRQChr14g0459831 Helianthus annuus HOM05D005539 ORTHO05D006644 5.3e-238 828.2 830 54.0
Dinv17988 Davidia involucrata HOM05D005539 ORTHO05D006644 3.8e-236 822.0 741 58.4
ECA238G2434 Erigeron canadensis HOM05D005539 ORTHO05D006644 1.1e-235 820.5 832 52.0
PSO384G3240 Papaver somniferum HOM05D005539 ORTHO05D006644 1.8e-233 813.1 826 53.3
CSS0043358 Camellia sinensis var. sinensis HOM05D005539 ORTHO05D006644 3.9e-233 812.0 824 54.7
CARHR207600 Cardamine hirsuta HOM05D005539 ORTHO05D006644 5.7e-232 808.1 814 52.5
Aa31LG11G6690 Aethionema arabicum HOM05D005539 ORTHO05D006644 2.3e-225 786.2 813 52.2
BcaB05g21701 Brassica carinata HOM05D005539 ORTHO05D006644 7.0e-222 774.6 816 51.2
vmacro10051 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 9.4e-219 764.2 856 51.3
SGA_v2.0_scaffold76G25107 Striga asiatica HOM05D005539 ORTHO05D006644 1.6e-218 763.5 874 49.3
Sc14g0005420 Simmondsia chinensis HOM05D005539 ORTHO05D006644 4.4e-216 755.4 711 54.7
Ah.04g164520 Amaranthus hybridus HOM05D005539 ORTHO05D006644 1.4e-214 750.4 829 50.1
FAN06G2075 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-213 745.0 624 63.0
FAN10G4325 Fragaria x ananassa HOM05D005539 ORTHO05D006644 5.9e-213 745.0 624 63.0
Cfa001325 Carpinus fangiana HOM05D005539 ORTHO05D006644 3.2e-211 739.2 645 60.2
FAN06G5029 Fragaria x ananassa HOM05D005539 ORTHO05D006644 4.5e-205 718.8 625 61.4
TPR.G2533 Trifolium pratense HOM05D005539 ORTHO05D006644 1.1e-198 697.6 625 59.5
BcaC06g32273 Brassica carinata HOM05D005539 ORTHO05D006644 5.9e-197 691.8 764 49.9
Hma1.2p1_0703F.1_g206540 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 1.7e-188 663.7 596 57.6
BcaC06g32275 Brassica carinata HOM05D005539 ORTHO05D006644 1.2e-184 651.0 625 55.0
ATR0193G007 Amborella trichopoda HOM05D005539 ORTHO05D006644 9.8e-176 621.3 722 47.4
Os04g0608400 Oryza sativa ssp. japonica HOM05D005539 ORTHO05D006644 3.4e-168 596.3 769 45.1
unitig_0.g238 Utricularia gibba HOM05D005539 ORTHO05D006644 1.6e-165 587.4 822 43.4
Zm00001eb430560 Zea mays HOM05D005539 ORTHO05D006644 6.2e-162 575.5 727 45.4
HPP92_019887 Vanilla planifolia HOM05D005539 ORTHO05D006644 2.0e-160 570.5 818 41.0
Solyc11g020190.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.2e-149 534.6 498 56.0
BraA10t45109Z Brassica rapa HOM05D005539 ORTHO05D006644 9.0e-145 518.5 549 51.2
SHI03446 Sapria himalayana HOM05D005539 ORTHO05D006644 1.4e-137 494.6 460 55.2
Dinv17986 Davidia involucrata HOM05D005539 ORTHO05D006644 1.8e-129 467.6 399 61.7
Dinv17987 Davidia involucrata HOM05D005539 ORTHO05D006644 2.4e-129 467.2 403 59.3
CDE04G1676 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 8.7e-124 448.7 555 45.8
Solyc11g008120.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 1.2e-117 428.3 399 55.9
Mapoly0043s0044 Marchantia polymorpha HOM05D005539 ORTHO05D006644 1.4e-113 414.8 807 33.8
QL08p063092 Quercus lobata HOM05D005539 ORTHO05D006644 9.1e-113 412.1 285 69.8
Nitab4.5_0001171g0020 Nicotiana tabacum HOM05D005539 ORTHO05D006644 3.1e-105 387.1 297 65.7
AagrBONN_evm.TU.Sc2ySwM_362.2924 Anthoceros agrestis HOM05D005539 ORTHO05D006644 5.3e-105 386.3 777 34.2
Nitab4.5_0003886g0070 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.5e-104 383.3 295 65.4
Pp3c6_24520 Physcomitrium patens HOM05D005539 ORTHO05D006644 1.4e-97 361.7 774 32.8
SEGI_35888 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 3.0e-92 344.0 461 41.2
HanXRQChr13g0392111 Helianthus annuus HOM05D005539 ORTHO05D006644 1.2e-85 322.0 485 42.1
Glyma.18G028233 Glycine max HOM05D005539 ORTHO05D006644 2.6e-83 314.3 282 59.2
Glyma.18G028167 Glycine max HOM05D005539 ORTHO05D006644 1.0e-79 302.4 238 61.8
CBR_g22013 Chara braunii HOM05D005539 ORTHO05D006644 2.3e-68 264.6 842 28.4
FAN06G2580 Fragaria x ananassa HOM05D005539 ORTHO05D006644 3.4e-67 260.8 189 67.7
Nitab4.5_0000395g0010 Nicotiana tabacum HOM05D005539 ORTHO05D006644 4.3e-62 243.8 250 55.2
Solyc11g008110.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 2.5e-54 218.0 137 73.0
CDE04G3215 Ceratophyllum demersum HOM05D005539 ORTHO05D006644 7.3e-54 216.5 228 47.8
vmacro22159 Vaccinium macrocarpon HOM05D005539 ORTHO05D006644 6.8e-52 209.9 365 40.5
SEGI_27471 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.2e-48 199.1 304 36.8
SEGI_33727 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 1.2e-48 199.1 259 39.8
Sabra08G0049700 Salix brachista HOM05D005539 ORTHO05D006644 5.1e-47 193.7 217 57.6
MD07G1220900 Malus domestica HOM05D005539 ORTHO05D006644 8.9e-44 183.0 181 54.7
Hma1.2p1_0703F.1_g206520 Hydrangea macrophylla HOM05D005539 ORTHO05D006644 5.8e-43 180.3 160 59.4
Nitab4.5_0001171g0030 Nicotiana tabacum HOM05D005539 ORTHO05D006644 5.4e-41 173.7 168 54.8
Nitab4.5_0003886g0090 Nicotiana tabacum HOM05D005539 ORTHO05D006644 2.3e-39 168.3 168 53.0
Solyc11g020180.3 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.3e-38 164.5 98 76.5
HPP92_019878 Vanilla planifolia HOM05D005539 ORTHO05D006644 9.6e-38 162.9 222 42.8
Solyc11g020160.2 Solanum lycopersicum HOM05D005539 ORTHO05D006644 3.4e-35 154.5 148 56.8
SEGI_03850 Sequoiadendron giganteum HOM05D005539 ORTHO05D006644 7.4e-30 136.7 214 35.0
MD07G1221200 Malus domestica HOM05D005539 ORTHO05D006644 1.3e-29 136.0 150 52.0
SHI03444 Sapria himalayana HOM05D000002 ORTHO05D000001 1.8e-20 105.5 106 52.8
MCO09G726 Micromonas commoda HOM05D005539 ORTHO05D006644 2.8e-13 81.6 779 21.1
Solyc11g020170.1 Solanum lycopersicum HOM05D005539 ORTHO05D006644 5.7e-06 57.4 43 58.1


User provided reference genes

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