Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.3e-282 975.7 499 100.0
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 3.1e-239 831.6 523 83.2
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 6.3e-232 807.4 539 80.3
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 1.7e-221 772.7 523 76.9
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 7.1e-183 644.4 523 66.3
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 5.6e-180 634.8 534 64.2
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 8.9e-178 627.5 547 62.7
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 3.7e-176 622.1 543 62.8
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 3.5e-174 615.5 539 60.3
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 1.0e-173 614.0 570 60.4
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 1.3e-173 613.6 538 61.0
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 1.5e-172 610.1 527 62.4
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 1.6e-171 606.7 536 62.1
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 2.1e-171 606.3 532 60.9
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 1.4e-170 603.6 550 60.5
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.8e-170 603.2 538 60.2
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 2.4e-170 602.8 537 59.8
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 2.4e-170 602.8 546 60.8
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 6.8e-170 601.3 561 59.2
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 6.8e-170 601.3 538 61.5
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.5e-169 600.1 546 61.2
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 2.6e-169 599.4 544 59.6
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 2.6e-169 599.4 550 60.2
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.4e-169 599.0 540 60.0
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 3.4e-169 599.0 534 60.7
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 5.8e-169 598.2 542 59.8
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 9.9e-169 597.4 545 59.6
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 1.3e-168 597.0 527 61.5
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 1.3e-168 597.0 540 60.0
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 1.7e-168 596.7 548 59.3
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 1.7e-168 596.7 545 59.6
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 2.9e-168 595.9 541 60.6
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 3.8e-168 595.5 527 61.1
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 1.4e-167 593.6 530 59.8
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 3.2e-167 592.4 529 60.9
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 1.6e-166 590.1 534 58.6
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 1.6e-166 590.1 528 59.8
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 3.5e-166 589.0 563 57.5
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 7.8e-166 587.8 542 59.6
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 1.0e-165 587.4 534 59.6
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.0e-165 587.4 535 60.0
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 1.3e-165 587.0 524 59.9
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.7e-165 586.6 529 61.8
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 1.7e-165 586.6 641 54.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 8.7e-165 584.3 532 58.5
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 1.5e-164 583.6 528 59.3
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 7.3e-164 581.3 528 59.7
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 7.3e-164 581.3 545 60.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.3e-163 580.5 531 58.0
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.3e-163 580.5 531 58.0
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.3e-163 580.5 542 58.7
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 1.6e-163 580.1 538 58.2
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.8e-163 578.6 539 58.4
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.1e-162 577.4 529 60.3
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.4e-162 577.0 536 57.6
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 1.4e-162 577.0 511 62.0
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 1.4e-162 577.0 554 57.6
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 2.4e-162 576.2 531 58.0
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 3.1e-162 575.9 539 57.7
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 4.0e-162 575.5 549 56.3
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 6.9e-162 574.7 528 58.0
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 2.0e-161 573.2 523 59.7
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 5.8e-161 571.6 530 58.7
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 9.9e-161 570.9 556 55.9
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 2.9e-160 569.3 522 59.0
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 2.9e-160 569.3 544 58.3
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 9.3e-159 564.3 565 55.8
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 3.5e-158 562.4 550 56.7
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 3.5e-158 562.4 552 57.1
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 1.3e-157 560.5 525 58.3
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 3.0e-157 559.3 596 53.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.5e-156 557.0 520 58.8
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.9e-156 556.6 553 56.1
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 5.6e-156 555.1 539 57.0
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 7.3e-156 554.7 526 58.2
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.6e-155 553.5 546 57.0
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 2.4e-154 549.7 539 55.8
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 4.2e-151 538.9 522 57.5
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 7.1e-151 538.1 544 55.1
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.8e-149 533.5 506 57.7
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.9e-148 530.0 567 53.8
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 2.5e-148 529.6 540 54.3
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 3.7e-147 525.8 534 55.1
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.4e-145 519.2 499 57.5
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 1.9e-143 513.5 555 51.5
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 7.1e-143 511.5 513 55.6
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 9.3e-143 511.1 516 55.4
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 1.3e-141 507.3 545 54.3
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 1.1e-140 504.2 489 55.2
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.4e-135 487.3 448 57.8
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 3.2e-135 486.1 475 55.6
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 4.6e-134 482.3 559 48.5
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.3e-133 480.7 505 55.8
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 2.5e-132 476.5 388 65.2
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.8e-131 472.2 478 55.9
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 8.2e-131 471.5 396 60.6
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 2.4e-130 469.9 382 62.6
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 3.1e-130 469.5 552 53.1
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 3.8e-120 436.0 349 65.0
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 2.0e-116 423.7 370 61.9
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 4.8e-115 419.1 525 46.1
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.4e-106 391.0 525 46.9
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 1.7e-104 384.0 558 41.0
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 2.4e-98 363.6 467 47.1
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 4.5e-97 359.4 359 54.9
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 1.0e-93 348.2 389 51.2
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 1.5e-92 344.4 276 64.5
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 4.4e-92 342.8 275 62.9
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.0e-88 331.6 342 52.3
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 1.9e-87 327.4 395 49.6
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.1e-78 297.4 248 62.9
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 6.2e-78 295.8 320 48.8
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 2.6e-76 290.4 279 56.3
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 4.1e-74 283.1 519 38.2
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 8.1e-70 268.9 528 32.6
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 4.9e-67 259.6 255 57.6
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.6e-65 254.6 273 53.8
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 9.5e-63 245.4 262 54.6
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.5e-60 238.0 507 33.9
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 5.4e-58 229.6 218 54.6
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.2e-57 228.4 306 41.5
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.1e-57 227.6 282 48.9
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 5.1e-56 223.0 310 40.6
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 8.6e-56 222.2 490 32.4
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 3.2e-50 203.8 186 59.1
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 9.3e-50 202.2 187 59.4
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 2.2e-43 181.0 109 77.1
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 3.5e-41 173.7 234 47.0
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 5.6e-39 166.4 85 89.4
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 2.6e-36 157.5 208 45.7
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.7e-35 154.8 409 29.1
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.3e-30 138.7 82 76.8
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 1.2e-25 122.1 68 83.8
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 2.7e-25 120.9 393 25.4
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 7.9e-25 119.4 99 61.6
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 7.4e-23 112.8 562 23.8
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 1.7e-19 101.7 62 72.6
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 7.4e-15 86.3 205 27.8
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.0e-12 78.2 39 89.7
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 3.4e-12 77.4 121 41.3


User provided reference genes

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