Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 0.0e+00 1780.4 984 100.0
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 0.0e+00 1550.4 925 91.9
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 0.0e+00 1541.6 925 91.6
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 0.0e+00 1470.7 927 86.5
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 5.3e-307 1057.7 952 64.9
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 7.1e-304 1047.3 927 65.9
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 6.0e-303 1044.3 949 63.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 3.9e-302 1041.6 880 65.3
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 9.0e-299 1030.4 889 66.4
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 3.4e-298 1028.5 857 66.5
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 4.9e-297 1024.6 883 65.3
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 9.3e-296 1020.4 933 63.6
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 6.0e-295 1017.7 943 63.8
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 1.8e-294 1016.1 848 67.1
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 3.0e-294 1015.4 871 66.5
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 5.0e-289 998.0 853 64.9
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 5.5e-288 994.6 878 64.9
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 7.2e-288 994.2 939 64.3
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 7.9e-287 990.7 878 64.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.3e-286 989.9 933 62.6
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 3.0e-286 988.8 878 64.9
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.5e-285 986.5 838 64.0
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 9.7e-285 983.8 884 62.6
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 1.3e-284 983.4 839 65.3
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 1.1e-280 970.3 873 62.3
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 9.4e-280 967.2 944 62.7
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 1.2e-279 966.8 927 62.8
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.6e-279 966.5 825 66.7
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 2.1e-279 966.1 944 62.5
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 1.1e-277 960.3 839 64.1
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 1.1e-277 960.3 944 61.4
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 6.3e-276 954.5 946 61.0
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 4.1e-275 951.8 929 58.2
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 1.2e-274 950.3 829 66.1
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.9e-273 945.7 838 62.1
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 4.2e-272 941.8 858 64.2
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 1.4e-270 936.8 931 57.8
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 8.8e-270 934.1 950 58.8
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 3.7e-268 928.7 903 60.9
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 4.1e-267 925.2 928 58.8
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 7.0e-267 924.5 933 58.9
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 2.0e-266 922.9 928 57.3
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 2.0e-266 922.9 872 61.2
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.5e-266 922.2 870 59.9
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 2.9e-265 919.1 906 59.6
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 6.5e-265 917.9 885 61.8
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 1.5e-264 916.8 851 61.6
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 1.8e-262 909.8 951 57.2
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.3e-260 903.7 944 58.5
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 2.7e-258 896.0 906 57.2
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 7.7e-258 894.4 890 60.0
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 5.0e-257 891.7 930 55.9
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 2.5e-256 889.4 886 59.7
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.6e-255 886.7 936 57.7
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 6.1e-255 884.8 980 54.8
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 8.0e-255 884.4 943 58.9
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 2.3e-254 882.9 799 61.6
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.2e-254 881.7 849 59.2
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 7.5e-253 877.9 939 57.4
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 1.3e-252 877.1 946 55.1
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.2e-252 876.3 848 59.6
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 4.1e-251 872.1 860 60.2
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 1.7e-249 866.7 857 58.0
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.9e-248 863.2 935 53.9
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 3.6e-247 859.0 862 57.3
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 6.1e-247 858.2 845 57.8
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 2.3e-246 856.3 899 55.6
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 6.8e-246 854.7 857 57.9
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 2.2e-244 849.7 929 56.1
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.7e-244 849.0 913 55.1
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 7.0e-243 844.7 952 53.5
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.0e-242 843.2 811 58.8
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.3e-240 835.9 947 53.6
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.4e-238 830.5 890 57.4
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 2.3e-238 829.7 889 56.4
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 1.5e-237 827.0 903 54.8
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 2.4e-235 819.7 944 53.9
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 2.4e-235 819.7 870 56.2
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 9.2e-235 817.8 912 56.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 4.6e-234 815.5 987 51.9
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 2.3e-230 803.1 773 59.2
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 3.7e-228 795.8 948 51.8
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.6e-226 790.4 935 52.8
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 2.7e-226 789.6 864 53.2
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 4.6e-226 788.9 939 50.7
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 4.3e-224 782.3 946 50.7
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 4.3e-224 782.3 946 50.7
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 8.1e-223 778.1 945 50.5
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 1.1e-222 777.7 942 50.5
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 3.1e-222 776.2 933 51.4
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 9.8e-221 771.2 942 50.1
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 4.9e-220 768.8 848 53.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 4.1e-219 765.8 956 49.7
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.6e-218 763.8 841 54.3
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 3.4e-213 746.1 836 52.2
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 7.6e-213 745.0 939 50.2
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.1e-210 736.9 941 49.4
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 3.5e-210 736.1 935 50.1
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 1.1e-208 731.1 949 49.1
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 1.8e-206 723.8 935 49.5
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.0e-201 706.4 857 51.3
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 2.5e-200 703.4 839 51.4
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.6e-200 702.2 678 59.3
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 1.2e-194 684.5 599 61.6
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 1.3e-193 681.0 990 43.6
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 2.1e-191 673.7 976 45.9
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.6e-183 647.5 849 47.1
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 3.0e-177 626.7 462 68.6
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 9.7e-176 621.7 849 46.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 5.5e-171 605.9 997 41.4
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 4.1e-166 589.7 840 45.2
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 6.1e-162 575.9 458 65.1
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 9.4e-155 552.0 454 61.9
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.1e-150 538.5 833 43.0
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 6.8e-129 466.1 536 51.9
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 2.4e-110 404.4 894 35.3
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.3e-105 387.9 370 63.0
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 9.9e-104 382.5 431 50.3
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 1.5e-96 358.6 320 60.0
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 3.0e-92 344.4 437 46.7
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 4.3e-91 340.5 390 57.7
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 5.2e-89 333.6 444 45.7
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 8.4e-87 326.2 294 59.2
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 2.5e-83 314.7 488 47.1
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 4.6e-77 293.9 416 48.3
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 3.4e-72 277.7 564 36.3
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.8e-71 274.2 240 62.5
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.9e-70 271.9 452 47.3
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 3.3e-67 261.2 517 34.0
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 2.0e-64 251.9 426 47.7
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 1.1e-54 219.5 149 71.1
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 3.2e-54 218.0 1022 25.9
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 1.1e-51 209.5 168 63.1
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 3.8e-39 167.9 151 64.2
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.1e-38 166.4 151 64.2
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 5.5e-30 137.5 96 64.6
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 8.3e-26 123.6 77 77.9
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 4.2e-22 111.3 88 62.5
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.1e-21 109.0 201 36.3
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 9.8e-19 100.1 81 55.6
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 3.1e-17 95.1 90 60.0
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 5.9e-16 90.9 90 58.9
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 1.6e-13 82.8 142 43.7
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 2.3e-12 79.0 77 50.6
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 1.3e-10 73.2 42 81.0
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 8.3e-10 70.5 89 50.6
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.0e-07 63.5 129 31.0
AagrBONN_evm.TU.Sc2ySwM_368.453 Anthoceros agrestis HOM05D030179 ORTHO05D026588 1.5e-06 59.7 62 45.2
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 2.5e-06 58.9 40 60.0


User provided reference genes

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