Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG05G010470 Citrullus lanatus HOM05D006076 ORTHO05D007506 3.7e-210 734.6 358 100.0
CsaV3_3G018020 Cucumis sativus L. HOM05D006076 ORTHO05D007506 2.1e-184 649.0 357 91.0
MELO3C019565.2 Cucumis melo HOM05D006076 ORTHO05D007506 2.7e-184 648.7 351 91.7
Sed0003951 Sechium edule HOM05D006076 ORTHO05D007506 7.9e-144 514.2 358 74.3
CiPaw.11G066500 Carya illinoinensis HOM05D006076 ORTHO05D007506 5.5e-137 491.5 360 66.4
Dinv19079 Davidia involucrata HOM05D006076 ORTHO05D007506 2.1e-136 489.6 359 66.9
Rhsim10G0185200 Rhododendron simsii HOM05D006076 ORTHO05D007506 5.7e-134 481.5 361 66.5
Ciclev10005246m.g Citrus clementina HOM05D006076 ORTHO05D007506 2.2e-133 479.6 357 66.7
FAN08G1959 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-132 476.9 360 63.3
FAN04G0499 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.2e-131 473.8 360 63.3
RcHm_v2.0_Chr7g0220631 Rosa chinensis HOM05D006076 ORTHO05D007506 7.7e-131 471.1 361 63.2
CSS0031022 Camellia sinensis var. sinensis HOM05D006076 ORTHO05D007506 1.7e-130 469.9 369 64.2
FvH4_5g28670 Fragaria vesca HOM05D006076 ORTHO05D007506 1.7e-130 469.9 356 63.5
GSVIVG01013049001 Vitis vinifera HOM05D006076 ORTHO05D007506 8.5e-130 467.6 355 65.4
FAN18G0334 Fragaria x ananassa HOM05D006076 ORTHO05D007506 1.4e-129 466.8 354 63.3
Nitab4.5_0002648g0050 Nicotiana tabacum HOM05D006076 ORTHO05D007506 3.2e-129 465.7 363 62.3
Manes.01G123200 Manihot esculenta HOM05D006076 ORTHO05D007506 4.2e-129 465.3 360 62.5
MD08G1242300 Malus domestica HOM05D006076 ORTHO05D007506 2.1e-128 463.0 359 63.0
Nitab4.5_0000005g0100 Nicotiana tabacum HOM05D006076 ORTHO05D007506 2.1e-128 463.0 363 62.0
Sopen02g011760 Solanum pennellii HOM05D006076 ORTHO05D007506 6.1e-128 461.5 359 63.5
RcHm_v2.0_Chr2g0106631 Rosa chinensis HOM05D006076 ORTHO05D007506 1.4e-127 460.3 360 61.9
TAR629G1722 Trochodendron aralioides HOM05D006076 ORTHO05D007506 1.8e-127 459.9 363 61.2
Cc07_g12790 Coffea canephora HOM05D006076 ORTHO05D007506 5.1e-127 458.4 364 62.4
COL.COLO4_20049 Corchorus olitorius HOM05D006076 ORTHO05D007506 8.8e-127 457.6 360 63.3
Thecc.04G060400 Theobroma cacao HOM05D006076 ORTHO05D007506 1.5e-126 456.8 360 62.2
SGA_v2.0_scaffold115G32050 Striga asiatica HOM05D006076 ORTHO05D007506 2.0e-126 456.4 354 63.0
Lalb_Chr17g0345871 Lupinus albus HOM05D006076 ORTHO05D007506 3.3e-126 455.7 358 62.8
MD15G1436000 Malus domestica HOM05D006076 ORTHO05D007506 7.4e-126 454.5 364 62.4
TWI74G1437 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 7.4e-126 454.5 359 61.0
LjContig00141g0009861 Lotus japonicus HOM05D006076 ORTHO05D007506 2.8e-125 452.6 359 63.2
QL04p075342 Quercus lobata HOM05D006076 ORTHO05D007506 3.7e-125 452.2 360 63.3
Actinidia17164 Actinidia chinensis HOM05D006076 ORTHO05D007506 1.1e-124 450.7 363 62.5
CANSAT11G2533 Cannabis sativa HOM05D006076 ORTHO05D007506 1.1e-124 450.7 365 61.1
PSO782G3474 Papaver somniferum HOM05D006076 ORTHO05D007506 9.1e-124 447.6 368 60.3
TWI53G1019 Tripterygium wilfordii HOM05D006076 ORTHO05D007506 1.2e-123 447.2 360 61.1
DCAR_003407 Daucus carota HOM05D006076 ORTHO05D007506 2.6e-123 446.0 357 60.2
Glyma.02G240700 Glycine max HOM05D006076 ORTHO05D007506 2.6e-123 446.0 357 62.2
PGR042G3996 Punica granatum HOM05D006076 ORTHO05D007506 2.6e-123 446.0 361 61.2
Eucgr.J01641 Eucalyptus grandis HOM05D006076 ORTHO05D007506 5.9e-123 444.9 363 58.7
Psat2g042920 Pisum sativum HOM05D006076 ORTHO05D007506 5.9e-123 444.9 358 61.2
Potri.017G139700 Populus trichocarpa HOM05D006076 ORTHO05D007506 2.2e-122 443.0 356 61.8
THA.LOC104820862 Tarenaya hassleriana HOM05D006076 ORTHO05D007506 2.2e-122 443.0 350 62.0
Phvul.008G241000 Phaseolus vulgaris HOM05D006076 ORTHO05D007506 5.0e-122 441.8 357 60.5
Glyma.14G210200 Glycine max HOM05D006076 ORTHO05D007506 6.5e-122 441.4 359 61.0
PSO063G3081 Papaver somniferum HOM05D006076 ORTHO05D007506 6.5e-122 441.4 368 59.8
Hma1.2p1_0034F.1_g021380 Hydrangea macrophylla HOM05D006076 ORTHO05D007506 3.2e-121 439.1 360 60.8
Ca_05760_v3 Cicer arietinum L. HOM05D006076 ORTHO05D007506 4.2e-121 438.7 359 61.6
VMungo0647G0600 Vigna mungo HOM05D006076 ORTHO05D007506 4.2e-121 438.7 356 60.4
HanXRQChr16g0532291 Helianthus annuus HOM05D006076 ORTHO05D007506 5.5e-121 438.3 350 61.4
TPR.G5335 Trifolium pratense HOM05D006076 ORTHO05D007506 5.5e-121 438.3 358 60.6
arahy.Tifrunner.gnm1.ann1.T03I92 Arachis hypogaea HOM05D006076 ORTHO05D007506 7.2e-121 438.0 360 61.7
Gohir.D11G176000 Gossypium hirsutum HOM05D006076 ORTHO05D007506 9.4e-121 437.6 368 59.0
arahy.Tifrunner.gnm1.ann1.19NIP2 Arachis hypogaea HOM05D006076 ORTHO05D007506 1.6e-120 436.8 363 60.6
MSTRG.15638 Avicennia marina HOM05D006076 ORTHO05D007506 2.1e-120 436.4 353 59.5
Migut.K00743 Erythranthe guttata HOM05D006076 ORTHO05D007506 2.7e-120 436.0 353 60.3
Sabra17G0117900 Salix brachista HOM05D006076 ORTHO05D007506 6.1e-120 434.9 356 59.8
Solyc02g036380.3 Solanum lycopersicum HOM05D006076 ORTHO05D007506 8.0e-120 434.5 408 55.4
Thhalv10014026m.g Eutrema salsugineum HOM05D006076 ORTHO05D007506 3.9e-119 432.2 356 60.1
AT5G17290 Arabidopsis thaliana HOM05D006076 ORTHO05D007506 1.1e-118 430.6 355 58.6
Cfa019426 Carpinus fangiana HOM05D006076 ORTHO05D007506 1.5e-118 430.3 328 63.7
AL6G28370 Arabidopsis lyrata HOM05D006076 ORTHO05D007506 3.3e-118 429.1 355 58.3
Lsat_1_v5_gn_3_67061 Lactuca sativa HOM05D006076 ORTHO05D007506 3.3e-118 429.1 351 59.5
Manes.02G080800 Manihot esculenta HOM05D006076 ORTHO05D007506 3.3e-118 429.1 358 60.6
SalBow5G0086 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.4e-118 428.7 356 59.3
SalBow5G5467 Salvia bowleyana HOM05D006076 ORTHO05D007506 4.4e-118 428.7 356 59.3
BcaC03g18547 Brassica carinata HOM05D006076 ORTHO05D007506 3.7e-117 425.6 355 58.9
CARHR195920 Cardamine hirsuta HOM05D006076 ORTHO05D007506 8.2e-117 424.5 356 59.8
AUR62004772 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.1e-116 424.1 361 59.8
Sc09g0004490 Simmondsia chinensis HOM05D006076 ORTHO05D007506 1.8e-116 423.3 356 59.0
Medtr5g076920 Medicago truncatula HOM05D006076 ORTHO05D007506 7.0e-116 421.4 370 58.4
BcaB08g36791 Brassica carinata HOM05D006076 ORTHO05D007506 9.1e-116 421.0 355 58.3
Oeu012318.2 Olea europaea HOM05D006076 ORTHO05D007506 9.1e-116 421.0 426 50.5
vmacro20467 Vaccinium macrocarpon HOM05D006076 ORTHO05D007506 1.6e-115 420.2 484 49.0
Aa31LG11G12390 Aethionema arabicum HOM05D006076 ORTHO05D007506 2.6e-115 419.5 356 57.9
Sp6g26940 Schrenkiella parvula HOM05D006076 ORTHO05D007506 2.6e-115 419.5 352 58.5
EL10Ac4g08929 Beta vulgaris HOM05D006076 ORTHO05D007506 4.5e-115 418.7 358 59.2
BraA02t05373Z Brassica rapa HOM05D006076 ORTHO05D007506 5.9e-115 418.3 356 58.1
CAN.G123.2 Capsicum annuum HOM05D006076 ORTHO05D007506 5.9e-115 418.3 345 61.2
Aqoxy3G04116 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 7.7e-115 417.9 369 57.5
Carub.0006s1548 Capsella rubella HOM05D006076 ORTHO05D007506 7.7e-115 417.9 356 58.4
A02p04100 Brassica napus HOM05D006076 ORTHO05D007506 1.0e-114 417.5 356 58.4
BcaC04g18810 Brassica carinata HOM05D006076 ORTHO05D007506 2.9e-114 416.0 356 58.1
C02p08950 Brassica napus HOM05D006076 ORTHO05D007506 8.5e-114 414.5 356 58.1
BolC2t06804H Brassica oleracea HOM05D006076 ORTHO05D007506 8.5e-114 414.5 356 58.1
BolC9t58826H Brassica oleracea HOM05D006076 ORTHO05D007506 1.9e-113 413.3 352 58.8
Duzib138G0191 Durio zibethinus HOM05D006076 ORTHO05D007506 3.6e-112 409.1 361 57.3
Gorai.007G188600 Gossypium raimondii HOM05D006076 ORTHO05D007506 1.0e-111 407.5 442 49.3
BraA10t44270Z Brassica rapa HOM05D006076 ORTHO05D007506 1.4e-111 407.1 353 58.4
Lj4A252G57 Lonicera japonica HOM05D006076 ORTHO05D007506 1.8e-111 406.8 324 62.7
A10p22110 Brassica napus HOM05D006076 ORTHO05D007506 2.3e-111 406.4 353 58.4
unitig_0.g2639 Utricularia gibba HOM05D006076 ORTHO05D007506 4.4e-110 402.1 353 55.5
RcHm_v2.0_Chr5g0080521 Rosa chinensis HOM05D006076 ORTHO05D007506 2.2e-109 399.8 284 66.9
Solyc06g043140.4 Solanum lycopersicum HOM05D006076 ORTHO05D007506 2.8e-109 399.4 353 58.1
C09p59900 Brassica napus HOM05D006076 ORTHO05D007506 4.5e-107 392.1 397 52.4
CDE04G2995 Ceratophyllum demersum HOM05D006076 ORTHO05D007506 1.0e-103 380.9 339 53.7
ATR0807G042 Amborella trichopoda HOM05D006076 ORTHO05D007506 1.4e-103 380.6 364 53.3
ECA246G5189 Erigeron canadensis HOM05D006076 ORTHO05D000091 1.2e-99 367.5 267 64.0
Os02g0117800 Oryza sativa ssp. japonica HOM05D006076 ORTHO05D007506 5.9e-99 365.2 365 50.1
SEGI_25199 Sequoiadendron giganteum HOM05D006076 ORTHO05D007506 2.9e-98 362.8 387 50.4
Gohir.A11G169800 Gossypium hirsutum HOM05D006076 ORTHO05D007506 3.3e-97 359.4 360 53.1
Zm00001eb230080 Zea mays HOM05D006076 ORTHO05D007506 4.0e-95 352.4 362 47.0
Atru.chr1.2153 Acer truncatum HOM05D006076 ORTHO05D007506 8.9e-95 351.3 240 67.1
Peaxi162Scf00294g00628 Petunia axillaris HOM05D006076 ORTHO05D007506 2.6e-94 349.7 353 53.3
Hund22204 Selenicereus undatus HOM05D006076 ORTHO05D007506 6.3e-93 345.1 353 53.3
Nn4g24719 Nelumbo nucifera HOM05D006076 ORTHO05D007506 1.5e-86 323.9 299 56.2
Ah.05g177670 Amaranthus hybridus HOM05D006076 ORTHO05D007506 6.4e-85 318.5 333 51.4
Actinidia40417 Actinidia chinensis HOM05D006076 ORTHO05D007506 2.0e-83 313.5 248 62.1
MBI06_g30602_MAGBIO Magnolia biondii HOM05D006076 ORTHO05D007506 3.3e-81 306.2 297 53.2
Prupe.1G579800 Prunus persica HOM05D006076 ORTHO05D007506 2.1e-80 303.5 208 67.8
Mapoly0019s0054 Marchantia polymorpha HOM05D006076 ORTHO05D007506 8.0e-80 301.6 276 51.8
AagrBONN_evm.TU.Sc2ySwM_344.1639 Anthoceros agrestis HOM05D006076 ORTHO05D007506 1.3e-77 294.3 411 39.7
AUR62037480 Chenopodium quinoa HOM05D006076 ORTHO05D007506 4.1e-76 289.3 209 66.0
Pp3c4_11110 Physcomitrium patens HOM05D006076 ORTHO05D007506 1.6e-75 287.3 375 41.1
SMO116G0154 Selaginella moellendorffii HOM05D006076 ORTHO05D007506 1.1e-73 281.2 364 39.3
Cpa.g.sc178.26 Carica papaya HOM05D006076 ORTHO05D007506 9.9e-70 268.1 154 76.6
Haze_08537 Corylus avellana HOM05D006076 ORTHO05D007506 1.6e-67 260.8 359 43.2
QL04p075308 Quercus lobata HOM05D006076 ORTHO05D007506 2.1e-59 233.8 128 79.7
TAR629G0059 Trochodendron aralioides HOM05D006076 ORTHO05D007506 3.9e-58 229.6 126 77.8
QL04p075158 Quercus lobata HOM05D006076 ORTHO05D007506 6.6e-58 228.8 235 54.5
HPP92_002577 Vanilla planifolia HOM05D006076 ORTHO05D007506 6.0e-51 205.7 260 44.6
HPP92_002578 Vanilla planifolia HOM05D006076 ORTHO05D007871 6.0e-51 205.7 260 44.6
HanXRQChr02g0046461 Helianthus annuus HOM05D006076 ORTHO05D007506 1.8e-39 167.5 192 48.4
HanXRQChr16g0508921 Helianthus annuus HOM05D006076 ORTHO05D007506 1.8e-39 167.5 192 48.4
CBR_g50474 Chara braunii HOM05D001161 ORTHO05D000497 3.1e-39 166.8 126 57.1
Cpa.g.sc178.27 Carica papaya HOM05D006076 ORTHO05D007506 4.5e-38 162.9 149 55.0
BcaNung00408 Brassica carinata HOM05D006076 ORTHO05D007506 4.2e-36 156.4 208 47.1
QL04p043726 Quercus lobata HOM05D000176 ORTHO05D007506 6.7e-34 149.1 89 74.2
QL04p075322 Quercus lobata HOM05D006076 ORTHO05D007506 1.3e-26 124.8 75 73.3
Aqoxy531s001 Aquilegia oxysepala HOM05D006076 ORTHO05D007506 3.7e-24 116.7 142 46.5
QL04p075364 Quercus lobata HOM05D000397 ORTHO05D007506 1.0e-21 108.6 120 51.7
AUR62037479 Chenopodium quinoa HOM05D006076 ORTHO05D007506 1.7e-16 91.3 124 45.2
Cre14.g630907 Chlamydomonas reinhardtii HOM05D006076 ORTHO05D007506 1.7e-16 91.3 198 31.3
Actinidia40416 Actinidia chinensis HOM05D006076 ORTHO05D007506 4.7e-11 73.2 116 38.8


User provided reference genes

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