Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G013670 Citrullus lanatus HOM05D000283 ORTHO05D005391 0.0e+00 1954.1 1031 100.0
CsaV3_5G006520 Cucumis sativus L. HOM05D000283 ORTHO05D005391 0.0e+00 1796.6 1032 90.0
MELO3C023808.2 Cucumis melo HOM05D000283 ORTHO05D005391 0.0e+00 1779.2 1032 89.5
Sed0023338 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1638.6 1068 79.1
Sed0010822 Sechium edule HOM05D000283 ORTHO05D005391 0.0e+00 1564.7 1033 79.2
Thecc.10G063000 Theobroma cacao HOM05D000283 ORTHO05D005391 0.0e+00 1216.4 1042 62.9
Duzib106G1632 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1194.1 1043 61.7
Haze_16972 Corylus avellana HOM05D000283 ORTHO05D005391 0.0e+00 1187.9 1098 60.7
Duzib128G1699 Durio zibethinus HOM05D000283 ORTHO05D005391 0.0e+00 1187.2 1042 62.5
QL08p057534 Quercus lobata HOM05D000283 ORTHO05D005391 0.0e+00 1184.9 1147 59.6
RcHm_v2.0_Chr1g0365011 Rosa chinensis HOM05D000283 ORTHO05D005391 0.0e+00 1179.9 1049 63.2
Cfa001559 Carpinus fangiana HOM05D000283 ORTHO05D005391 0.0e+00 1179.1 1102 60.3
CiPaw.02G178600 Carya illinoinensis HOM05D000283 ORTHO05D005391 0.0e+00 1179.1 1090 61.4
Atru.chr12.592 Acer truncatum HOM05D000283 ORTHO05D005391 0.0e+00 1175.2 1044 62.5
Gohir.D10G217200 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1173.7 1045 62.3
Gorai.011G242800 Gossypium raimondii HOM05D000283 ORTHO05D005391 0.0e+00 1170.2 1045 61.9
Gohir.A10G208900 Gossypium hirsutum HOM05D000283 ORTHO05D005391 0.0e+00 1167.1 1045 62.0
Cpa.g.sc1.303 Carica papaya HOM05D000283 ORTHO05D005391 0.0e+00 1157.5 1042 61.2
TAR633G1628 Trochodendron aralioides HOM05D000283 ORTHO05D005391 0.0e+00 1156.4 1049 62.1
MD07G1184700 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1155.2 1106 59.7
CSS0009141 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 0.0e+00 1147.1 1079 60.1
Prupe.2G224600 Prunus persica HOM05D000283 ORTHO05D005391 0.0e+00 1137.1 1124 57.7
Manes.07G106300 Manihot esculenta HOM05D000283 ORTHO05D005391 0.0e+00 1135.6 1077 60.7
Lj5g0022773 Lotus japonicus HOM05D000283 ORTHO05D005391 0.0e+00 1134.0 1046 60.2
FvH4_7g20770 Fragaria vesca HOM05D000283 ORTHO05D005391 0.0e+00 1131.7 1064 60.2
Glyma.20G242100 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1131.3 1042 60.7
FAN06G1635 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1130.2 1064 60.1
Ciclev10030610m.g Citrus clementina HOM05D000283 ORTHO05D005391 0.0e+00 1127.5 1041 60.7
VMungo0720G2546 Vigna mungo HOM05D000283 ORTHO05D005391 0.0e+00 1122.5 1043 60.4
Glyma.10G292300 Glycine max HOM05D000283 ORTHO05D005391 0.0e+00 1120.9 1048 60.3
arahy.Tifrunner.gnm1.ann1.M4B7ES Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1117.8 1047 60.3
arahy.Tifrunner.gnm1.ann1.79HMAA Arachis hypogaea HOM05D000283 ORTHO05D005391 0.0e+00 1112.4 1047 60.1
TWI15G0630 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1111.3 1087 57.7
COL.COLO4_05804 Corchorus olitorius HOM05D000283 ORTHO05D005391 0.0e+00 1109.0 1076 57.6
TWI38G2098 Tripterygium wilfordii HOM05D000283 ORTHO05D005391 0.0e+00 1105.9 1106 57.0
MD01G1117300 Malus domestica HOM05D000283 ORTHO05D005391 0.0e+00 1104.0 1115 57.0
GSVIVG01032627001 Vitis vinifera HOM05D000283 ORTHO05D005391 0.0e+00 1098.2 984 62.7
FAN10G3387 Fragaria x ananassa HOM05D000283 ORTHO05D005391 0.0e+00 1096.6 1059 58.4
TPR.G10417 Trifolium pratense HOM05D000283 ORTHO05D005391 0.0e+00 1095.1 1041 59.4
Sabra08G0033800 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1093.2 1112 56.0
Hma1.2p1_0207F.1_g087980 Hydrangea macrophylla HOM05D000283 ORTHO05D005391 0.0e+00 1092.8 1130 55.7
Nn2g10554 Nelumbo nucifera HOM05D000283 ORTHO05D005391 0.0e+00 1088.6 1049 58.1
Potri.008G047700 Populus trichocarpa HOM05D000283 ORTHO05D005391 0.0e+00 1083.2 1071 56.9
Sabra10G0165400 Salix brachista HOM05D000283 ORTHO05D005391 0.0e+00 1080.9 1076 57.6
CANSAT56G0145 Cannabis sativa HOM05D000283 ORTHO05D005391 0.0e+00 1079.7 1072 56.8
TAR636G1569 Trochodendron aralioides HOM05D000283 ORTHO05D005391 1.4e-311 1072.8 1037 58.0
FAN06G4940 Fragaria x ananassa HOM05D000283 ORTHO05D005391 2.8e-311 1072.0 1064 58.3
Manes.10G039400 Manihot esculenta HOM05D000283 ORTHO05D005391 4.8e-303 1044.6 1046 57.7
Dinv31389 Davidia involucrata HOM05D000283 ORTHO05D005391 4.1e-302 1041.6 936 61.6
Medtr3g073080 Medicago truncatula HOM05D000283 ORTHO05D005391 1.0e-300 1036.9 1047 58.6
Lalb_Chr21g0307161 Lupinus albus HOM05D000283 ORTHO05D005391 3.8e-300 1035.0 1049 58.1
Ca_10211_v3 Cicer arietinum L. HOM05D000283 ORTHO05D005391 1.8e-297 1026.2 1030 58.0
Lj8C92G16 Lonicera japonica HOM05D000283 ORTHO05D005391 4.0e-297 1025.0 1093 56.1
Aqoxy5G01311 Aquilegia oxysepala HOM05D000283 ORTHO05D005391 5.2e-297 1024.6 1121 53.3
Cc02_g08650 Coffea canephora HOM05D000283 ORTHO05D005391 4.5e-293 1011.5 1045 56.7
THA.LOC104809997 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 2.9e-292 1008.8 1058 55.4
PGR142G1216 Punica granatum HOM05D000283 ORTHO05D005391 1.7e-287 993.0 1057 55.0
AUR62042665 Chenopodium quinoa HOM05D000283 ORTHO05D005391 4.9e-287 991.5 1020 56.9
THA.LOC104824248 Tarenaya hassleriana HOM05D000283 ORTHO05D005391 1.4e-286 989.9 1051 54.7
Sopen05g033370 Solanum pennellii HOM05D000283 ORTHO05D005391 2.7e-285 985.7 1038 56.2
AUR62025540 Chenopodium quinoa HOM05D000283 ORTHO05D005391 3.4e-280 968.8 1020 56.0
Oeu050639.2 Olea europaea HOM05D000283 ORTHO05D005391 2.0e-277 959.5 1028 54.3
Eucgr.G02777 Eucalyptus grandis HOM05D000283 ORTHO05D005391 4.6e-277 958.4 1040 53.6
AT2G39340 Arabidopsis thaliana HOM05D000283 ORTHO05D005391 7.8e-277 957.6 1050 53.4
Potri.010G213700 Populus trichocarpa HOM05D000283 ORTHO05D005391 1.1e-273 947.2 800 64.5
Nitab4.5_0010706g0030 Nicotiana tabacum HOM05D000283 ORTHO05D005391 1.5e-272 943.3 1094 52.3
Solyc05g054910.3 Solanum lycopersicum HOM05D000283 ORTHO05D005391 2.6e-272 942.6 1041 54.6
Nitab4.5_0000914g0100 Nicotiana tabacum HOM05D000283 ORTHO05D005391 2.2e-271 939.5 1078 52.8
Ah.16g107830 Amaranthus hybridus HOM05D000283 ORTHO05D005391 4.9e-271 938.3 1014 54.4
Thhalv10016180m.g Eutrema salsugineum HOM05D000283 ORTHO05D005391 2.4e-270 936.0 1047 51.6
Sp4g21650 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.2e-270 934.1 1045 51.5
SpUn0018_0020 Schrenkiella parvula HOM05D000283 ORTHO05D005391 9.2e-270 934.1 1045 51.5
Aa31LG5G20290 Aethionema arabicum HOM05D000283 ORTHO05D005391 4.6e-269 931.8 1078 51.1
AL4G36680 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 2.3e-268 929.5 1046 52.9
Migut.F01533 Erythranthe guttata HOM05D000283 ORTHO05D005391 6.2e-266 921.4 948 55.5
CARHR134130 Cardamine hirsuta HOM05D000283 ORTHO05D005391 1.1e-265 920.6 1048 52.4
Peaxi162Scf00015g02711 Petunia axillaris HOM05D000283 ORTHO05D005391 2.0e-264 916.4 1018 54.1
MBI05_g22074_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 7.1e-262 907.9 1027 53.6
ATR0681G328 Amborella trichopoda HOM05D000283 ORTHO05D005391 8.6e-260 901.0 1029 51.5
Phvul.007G008100 Phaseolus vulgaris HOM05D000283 ORTHO05D005391 4.3e-259 898.7 918 56.3
HanXRQChr15g0496771 Helianthus annuus HOM05D000283 ORTHO05D005391 3.6e-258 895.6 1078 51.7
PSO339G6458 Papaver somniferum HOM05D000283 ORTHO05D005391 4.4e-256 888.6 1167 47.3
EL10Ac2g03504 Beta vulgaris HOM05D000283 ORTHO05D005391 1.3e-252 877.1 1036 51.8
BcaC02g12050 Brassica carinata HOM05D000283 ORTHO05D005391 4.3e-251 872.1 1062 49.7
C04p08450 Brassica napus HOM05D000283 ORTHO05D005391 4.3e-251 872.1 1062 49.7
Psat6g239040 Pisum sativum HOM05D000283 ORTHO05D005391 1.2e-245 854.0 736 63.6
SalBow6G0521 Salvia bowleyana HOM05D000283 ORTHO05D005391 3.9e-244 849.0 1063 48.2
A04p30550 Brassica napus HOM05D000283 ORTHO05D005391 6.6e-244 848.2 1049 48.4
ECA232G0450 Erigeron canadensis HOM05D000283 ORTHO05D005391 1.5e-243 847.0 1049 49.6
BraA04t18452Z Brassica rapa HOM05D000283 ORTHO05D005391 1.9e-243 846.7 1049 48.5
BolC4t28220H Brassica oleracea HOM05D000283 ORTHO05D005391 8.4e-239 831.2 1045 48.2
PSO384G3825 Papaver somniferum HOM05D000283 ORTHO05D005391 2.4e-238 829.7 1168 45.5
BcaC02g07413 Brassica carinata HOM05D000283 ORTHO05D005391 2.3e-236 823.2 1045 47.8
C04p67220 Brassica napus HOM05D000283 ORTHO05D005391 2.3e-236 823.2 1045 47.8
CDE09G1073 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 5.1e-236 822.0 996 49.8
BcaB02g09134 Brassica carinata HOM05D000283 ORTHO05D005391 4.3e-235 818.9 1054 48.2
SGA_v2.0_scaffold291G47345 Striga asiatica HOM05D000283 ORTHO05D005391 1.3e-234 817.4 1058 48.9
CAN.G1602.11 Capsicum annuum HOM05D000283 ORTHO05D005391 9.0e-233 811.2 859 54.8
Lsat_1_v5_gn_9_66761 Lactuca sativa HOM05D000283 ORTHO05D004861 5.8e-232 808.5 1139 46.7
A05p07060 Brassica napus HOM05D000283 ORTHO05D005391 5.5e-230 802.0 1060 47.6
BraA05t19671Z Brassica rapa HOM05D000283 ORTHO05D005391 5.5e-230 802.0 1060 47.6
BolC4t22443H Brassica oleracea HOM05D000283 ORTHO05D005391 9.3e-230 801.2 1062 48.6
CiPaw.01G279800 Carya illinoinensis HOM05D000283 ORTHO05D005391 7.9e-229 798.1 617 67.9
BcaB06g29078 Brassica carinata HOM05D000283 ORTHO05D005391 6.7e-228 795.0 1042 47.4
unitig_749.g14014 Utricularia gibba HOM05D000283 ORTHO05D005391 7.4e-227 791.6 1006 48.8
Lalb_Chr02g0143871 Lupinus albus HOM05D000283 ORTHO05D005391 1.9e-222 776.9 677 63.8
Sc20g0002350 Simmondsia chinensis HOM05D000283 ORTHO05D005391 1.9e-219 766.9 871 52.6
Carub.0004s2138 Capsella rubella HOM05D000283 ORTHO05D005391 1.0e-207 728.0 714 58.5
CDE02G4519 Ceratophyllum demersum HOM05D000283 ORTHO05D005391 8.5e-207 724.9 864 49.5
Hund22435 Selenicereus undatus HOM05D000283 ORTHO05D005391 1.4e-196 691.0 550 66.4
AL5G26090 Arabidopsis lyrata HOM05D000283 ORTHO05D005391 7.7e-192 675.2 982 45.1
HPP92_015567 Vanilla planifolia HOM05D000283 ORTHO05D005391 1.6e-181 641.0 863 47.0
Zm00001eb351500 Zea mays HOM05D000283 ORTHO05D005391 2.1e-181 640.6 864 45.9
Zm00001eb289820 Zea mays HOM05D000283 ORTHO05D005391 1.4e-177 627.9 861 45.6
Os05g0462600 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 1.3e-175 621.3 852 46.6
Mapoly0013s0152 Marchantia polymorpha HOM05D000283 ORTHO05D005391 1.5e-166 591.3 894 44.1
AagrBONN_evm.TU.Sc2ySwM_117.607 Anthoceros agrestis HOM05D000283 ORTHO05D005391 2.3e-164 583.9 1101 38.6
MSTRG.311 Avicennia marina HOM05D000283 ORTHO05D005391 7.8e-160 568.9 454 65.6
Pp3c1_11990 Physcomitrium patens HOM05D000283 ORTHO05D005391 2.8e-149 533.9 966 39.3
Os01g0836400 Oryza sativa ssp. japonica HOM05D000283 ORTHO05D005391 6.2e-149 532.7 862 43.7
Actinidia03006 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.4e-146 522.7 390 67.9
SHI28193 Sapria himalayana HOM05D000283 ORTHO05D005391 8.3e-146 522.3 820 42.6
Actinidia38225 Actinidia chinensis HOM05D000283 ORTHO05D005391 1.1e-145 521.9 393 68.4
Dinv25941 Davidia involucrata HOM05D000283 ORTHO05D004861 5.1e-135 486.5 494 56.1
Pp3c2_24860 Physcomitrium patens HOM05D000283 ORTHO05D005391 1.9e-134 484.6 1072 35.7
CBR_g53551 Chara braunii HOM05D000283 ORTHO05D005391 3.4e-115 420.6 752 40.8
SMO143G0323 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 1.2e-112 412.1 380 58.9
Actinidia29199 Actinidia chinensis HOM05D000283 ORTHO05D005391 6.0e-112 409.8 333 65.8
DCAR_027697 Daucus carota HOM05D000283 ORTHO05D005391 3.9e-111 407.1 377 60.7
DCAR_005047 Daucus carota HOM05D000283 ORTHO05D005391 1.6e-101 375.2 563 44.8
SEGI_11420 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 8.5e-90 336.3 376 53.2
DCAR_005053 Daucus carota HOM05D000283 ORTHO05D005391 1.9e-89 335.1 500 42.6
CiPaw.01G279700 Carya illinoinensis HOM05D000283 ORTHO05D005391 8.3e-69 266.5 329 51.1
PRCOL_00005565 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 9.1e-68 263.1 395 42.0
Hund28801 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.5e-66 256.5 541 37.7
Hund28802 Selenicereus undatus HOM05D000283 ORTHO05D005391 8.5e-66 256.5 541 37.7
SMO141G0080 Selaginella moellendorffii HOM05D000283 ORTHO05D005391 4.7e-64 250.8 280 51.4
TAR381G1264 Trochodendron aralioides HOM05D000283 ORTHO05D005391 4.7e-64 250.8 260 52.3
Oeu058323.4 Olea europaea HOM05D000283 ORTHO05D005391 1.0e-63 249.6 373 46.4
MCO13G063 Micromonas commoda HOM05D000283 ORTHO05D005391 3.8e-58 231.1 323 41.5
HPP92_015519 Vanilla planifolia HOM05D000283 ORTHO05D005391 6.6e-50 203.8 152 65.8
MBI05_g32639_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.5e-49 202.6 175 61.7
SEGI_03051 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 5.8e-46 190.7 156 58.3
CAN.G10752.1 Capsicum annuum HOM05D000283 ORTHO05D005391 2.9e-45 188.3 263 44.5
MBI05_g30758_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D005391 1.9e-44 185.7 127 67.7
Cre06.g258100 Chlamydomonas reinhardtii HOM05D000283 ORTHO05D005391 2.7e-43 181.8 613 28.5
Gohir.D07G196232 Gossypium hirsutum HOM05D000283 ORTHO05D005391 2.7e-43 181.8 113 79.6
TAR381G0169 Trochodendron aralioides HOM05D000283 ORTHO05D005391 2.7e-43 181.8 168 59.5
QL10p060204 Quercus lobata HOM05D000283 ORTHO05D005391 2.8e-40 171.8 136 69.1
CSS0032527 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D005391 3.1e-39 168.3 201 47.8
PRCOL_00002713 Prasinoderma coloniale HOM05D000283 ORTHO05D005391 2.2e-37 162.2 305 36.4
SHI28196 Sapria himalayana HOM05D000283 ORTHO05D005391 7.3e-33 147.1 158 51.3
PSO339G3701 Papaver somniferum HOM05D000283 ORTHO05D005391 8.9e-31 140.2 455 30.5
SEGI_11289 Sequoiadendron giganteum HOM05D000283 ORTHO05D005391 7.6e-30 137.1 398 34.2
PGR044G1425 Punica granatum HOM05D000283 ORTHO05D005391 1.4e-28 132.9 85 77.6
Actinidia29200 Actinidia chinensis HOM05D000283 ORTHO05D019495 2.1e-27 129.0 104 61.5
Psat3g183560 Pisum sativum HOM05D000283 ORTHO05D030474 5.6e-25 120.9 75 76.0
Psat3g183640 Pisum sativum HOM05D000283 ORTHO05D030474 3.6e-24 118.2 75 74.7
Glyma.14G115250 Glycine max HOM05D000283 ORTHO05D212723 2.3e-18 99.0 64 81.2
HanXRQChr09g0246591 Helianthus annuus HOM05D000283 ORTHO05D005391 6.6e-18 97.4 104 50.0
BraA03t11440Z Brassica rapa HOM05D000283 ORTHO05D019495 5.3e-15 87.8 73 54.8
CSS0012380 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 9.0e-15 87.0 50 80.0
CSS0035555 Camellia sinensis var. sinensis HOM05D000283 ORTHO05D043332 7.6e-14 84.0 50 76.0
Lalb_Chr02g0143861 Lupinus albus HOM05D000283 ORTHO05D005391 8.4e-13 80.5 114 42.1
BcaB01g03663 Brassica carinata HOM05D033592 ORTHO05D019495 1.4e-12 79.7 106 48.1
Psat6g098640 Pisum sativum HOM05D000283 ORTHO05D005391 2.7e-11 75.5 52 61.5
Medtr1g115940 Medicago truncatula HOM05D000283 ORTHO05D019495 6.0e-11 74.3 185 30.8
A03p22060 Brassica napus HOM05D000283 ORTHO05D019495 5.1e-10 71.2 57 54.4
Psat1g113360 Pisum sativum HOM05D000283 ORTHO05D030474 5.1e-10 71.2 47 61.7
Psat1g094640 Pisum sativum HOM05D000467 ORTHO05D000379 1.5e-09 69.7 58 60.3
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 7.4e-09 67.4 57 61.4
Nn2g12827 Nelumbo nucifera HOM05D000283 ORTHO05D005391 4.8e-08 64.7 101 39.6
TWI09G0743 Tripterygium wilfordii HOM05D002494 ORTHO05D002673 5.3e-07 61.2 259 25.1
AagrBONN_evm.TU.Sc2ySwM_362.842 Anthoceros agrestis HOM05D002494 ORTHO05D002673 1.5e-06 59.7 332 23.8
Psat7g108960 Pisum sativum HOM05D000283 ORTHO05D030474 2.0e-06 59.3 49 53.1


User provided reference genes

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