Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.9e-172 608.6 336 100.0
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 1.2e-170 603.2 336 99.7
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 9.3e-163 577.0 336 94.9
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 5.6e-160 567.8 338 93.2
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.3e-159 566.6 337 92.6
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 2.1e-159 565.8 337 92.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 2.1e-159 565.8 337 92.6
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.1e-158 562.0 337 92.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 2.0e-157 559.3 337 92.0
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 2.6e-157 558.9 336 92.6
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.3e-156 556.6 338 91.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.7e-156 556.2 338 91.7
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.9e-156 555.4 337 91.7
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 3.8e-156 555.1 337 91.1
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 6.5e-156 554.3 337 87.5
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 8.4e-156 553.9 336 90.5
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.1e-155 553.5 337 90.8
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.5e-155 552.4 336 89.6
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 5.5e-155 551.2 337 91.7
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 2.1e-154 549.3 337 90.8
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 3.5e-154 548.5 337 90.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 4.6e-154 548.1 337 91.7
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 6.0e-154 547.7 338 91.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 6.7e-153 544.3 337 89.0
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 8.7e-153 543.9 339 90.3
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.5e-152 543.1 337 89.9
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.9e-152 542.7 337 89.0
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.5e-152 542.3 336 87.8
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 3.3e-152 542.0 337 89.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 3.3e-152 542.0 337 88.7
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 4.3e-152 541.6 349 88.0
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 90.5
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 2.8e-151 538.9 354 87.3
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.7e-151 538.5 337 88.7
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 3.7e-151 538.5 336 89.3
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 3.7e-151 538.5 336 89.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 88.4
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 6.3e-151 537.7 336 90.8
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 5.3e-150 534.6 336 89.3
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 1.2e-149 533.5 336 89.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 2.0e-149 532.7 338 88.2
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 2.0e-149 532.7 365 83.8
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.6e-149 532.3 337 88.7
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 3.4e-149 531.9 337 88.1
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 4.5e-149 531.6 340 88.8
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 1.0e-148 530.4 341 88.3
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 1.7e-148 529.6 338 87.9
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 85.2
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.9e-148 528.9 337 82.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.0e-148 528.1 338 85.5
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.5e-148 527.7 338 87.3
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.1e-147 526.9 340 87.6
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 1.1e-147 526.9 339 87.3
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 1.1e-147 526.9 336 88.4
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 1.4e-147 526.6 337 87.5
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 1.9e-147 526.2 340 88.2
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 4.2e-147 525.0 338 84.9
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 9.4e-147 523.9 339 86.4
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.6e-146 523.1 336 87.5
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 4.6e-146 521.5 355 83.9
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 4.6e-146 521.5 355 83.9
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.6e-146 521.5 339 86.7
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.0e-145 520.4 337 86.9
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.0e-145 520.4 372 80.9
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 3.9e-145 518.5 338 87.0
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 3.9e-145 518.5 338 87.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 5.1e-145 518.1 359 83.0
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 6.7e-145 517.7 337 85.5
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.8e-145 517.3 338 86.7
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 8.8e-145 517.3 338 86.7
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 1.5e-144 516.5 337 84.9
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.0e-144 516.2 353 84.1
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 5.7e-144 514.6 329 88.4
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 9.7e-144 513.8 337 86.1
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 1.7e-143 513.1 321 89.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.7e-143 511.9 336 83.6
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.8e-143 511.5 344 84.0
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 3.1e-142 508.8 337 83.7
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 5.3e-142 508.1 337 85.5
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 6.9e-142 507.7 338 85.2
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 6.9e-142 507.7 338 85.2
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 2.0e-141 506.1 330 87.0
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 86.6
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.7e-140 503.1 337 85.8
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.2e-140 502.7 347 83.0
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 8.5e-140 500.7 338 84.6
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.5e-139 499.2 336 78.9
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 321 88.2
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 9.4e-139 497.3 347 82.1
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 3.6e-138 495.4 340 80.3
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 7.9e-138 494.2 331 84.9
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 7.9e-138 494.2 339 83.2
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.0e-137 493.8 377 76.7
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.8e-137 493.0 321 86.9
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 3.3e-136 488.8 348 81.3
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 4.4e-136 488.4 366 77.6
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 5.7e-136 488.0 337 82.5
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.2e-135 486.1 325 86.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.2e-135 486.1 325 86.5
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 6.3e-135 484.6 337 83.7
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.8e-134 483.0 336 81.5
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 6.5e-132 474.6 336 73.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.7e-130 468.4 365 76.4
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 4.7e-130 468.4 365 76.4
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 1.0e-129 467.2 305 88.2
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.0e-129 465.7 336 79.2
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-125 453.4 338 79.6
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 5.2e-121 438.3 352 73.9
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.5e-120 436.8 334 79.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 1.7e-119 433.3 284 87.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.2e-117 427.2 254 99.6
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 2.7e-117 426.0 274 91.2
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.1e-115 420.6 516 54.8
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.5e-112 410.2 223 90.1
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 8.6e-108 394.4 339 74.0
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 2.8e-106 389.4 321 76.0
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 6.8e-105 384.8 319 75.5
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.4e-96 355.9 337 67.1
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 3.4e-96 355.9 336 67.9
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.3e-95 354.0 277 74.7
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 8.3e-87 324.7 381 47.5
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.1e-84 315.5 329 55.0
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.8e-81 307.0 147 98.0
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 5.1e-68 262.3 180 75.0
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 8.1e-66 255.0 212 78.3
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 3.9e-60 236.1 332 45.5
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 3.5e-53 213.0 115 87.0
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 5.5e-46 189.1 165 70.3
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.5e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.6e-40 170.2 91 93.4
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 2.7e-37 160.2 90 94.4
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.0e-36 158.3 90 93.3
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-21 108.2 64 90.6
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 2.4e-17 94.0 201 28.9
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 6.5e-15 85.9 266 28.2
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.2e-13 81.6 81 81.5
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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