Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G024920 Citrullus lanatus HOM05D005980 ORTHO05D007618 2.2e-307 1058.1 531 100.0
CsaV3_6G052070 Cucumis sativus L. HOM05D005980 ORTHO05D007618 6.6e-288 993.4 531 93.4
MELO3C007103.2 Cucumis melo HOM05D005980 ORTHO05D007618 1.3e-283 979.2 551 90.2
Sed0023515 Sechium edule HOM05D005980 ORTHO05D007618 1.3e-275 952.6 532 90.0
Sed0012577 Sechium edule HOM05D005980 ORTHO05D007618 1.2e-268 929.5 532 88.3
Prupe.4G086000 Prunus persica HOM05D005980 ORTHO05D007618 1.4e-218 763.1 533 73.0
GSVIVG01021555001 Vitis vinifera HOM05D005980 ORTHO05D007618 4.2e-218 761.5 516 74.4
QL05p054997 Quercus lobata HOM05D005980 ORTHO05D007618 3.6e-217 758.4 531 74.0
MD10G1257800 Malus domestica HOM05D005980 ORTHO05D007618 1.4e-216 756.5 535 72.5
Thecc.06G143900 Theobroma cacao HOM05D005980 ORTHO05D007618 1.5e-215 753.1 514 74.9
PGR102G3344 Punica granatum HOM05D005980 ORTHO05D007618 3.7e-214 748.4 547 71.1
Eucgr.D00262 Eucalyptus grandis HOM05D005980 ORTHO05D007618 4.8e-214 748.0 552 69.7
Dinv21517 Davidia involucrata HOM05D005980 ORTHO05D007618 4.5e-212 741.5 534 71.3
FvH4_3g05000 Fragaria vesca HOM05D005980 ORTHO05D007618 4.5e-212 741.5 558 69.7
Haze_05690 Corylus avellana HOM05D005980 ORTHO05D007618 1.9e-210 736.1 589 66.2
FAN11G3650 Fragaria x ananassa HOM05D005980 ORTHO05D007618 4.7e-209 731.5 565 68.7
Nn3g20318 Nelumbo nucifera HOM05D005980 ORTHO05D007618 4.7e-209 731.5 534 69.9
CiPaw.09G119300 Carya illinoinensis HOM05D005980 ORTHO05D007618 6.1e-209 731.1 532 69.9
RcHm_v2.0_Chr5g0014971 Rosa chinensis HOM05D005980 ORTHO05D007618 6.1e-209 731.1 557 68.8
Gohir.D05G148400 Gossypium hirsutum HOM05D005980 ORTHO05D007618 1.0e-208 730.3 507 73.0
FAN21G1725 Fragaria x ananassa HOM05D005980 ORTHO05D007618 1.1e-207 726.9 565 68.3
Oeu032723.1 Olea europaea HOM05D005980 ORTHO05D007618 1.1e-207 726.9 535 70.8
COL.COLO4_31005 Corchorus olitorius HOM05D005980 ORTHO05D007618 5.7e-207 724.5 525 71.4
Sopen02g019470 Solanum pennellii HOM05D005980 ORTHO05D007618 2.8e-206 722.2 536 70.3
CSS0007144 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 8.2e-206 720.7 537 70.6
CSS0019737 Camellia sinensis var. sinensis HOM05D005980 ORTHO05D007618 8.2e-206 720.7 536 70.1
Solyc02g070390.3 Solanum lycopersicum HOM05D005980 ORTHO05D007618 8.2e-206 720.7 536 70.3
TAR626G0855 Trochodendron aralioides HOM05D005980 ORTHO05D007618 1.1e-205 720.3 536 70.0
PGSC0003DMG402021097 Solanum tuberosum HOM05D005980 ORTHO05D007618 1.4e-205 719.9 536 69.8
Potri.001G358400 Populus trichocarpa HOM05D005980 ORTHO05D007618 1.6e-204 716.5 537 69.3
MSTRG.16268 Avicennia marina HOM05D005980 ORTHO05D007618 2.7e-204 715.7 539 69.9
Ciclev10014878m.g Citrus clementina HOM05D005980 ORTHO05D007618 7.7e-204 714.1 534 69.1
Actinidia13438 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.5e-202 709.9 541 69.3
FAN16G3332 Fragaria x ananassa HOM05D005980 ORTHO05D007618 3.2e-202 708.8 525 70.3
Nitab4.5_0000869g0050 Nicotiana tabacum HOM05D005980 ORTHO05D007618 9.4e-202 707.2 538 69.0
Hma1.2p1_0586F.1_g183830 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 6.1e-201 704.5 468 75.2
Sabra16G0236200 Salix brachista HOM05D005980 ORTHO05D007618 1.4e-200 703.4 549 67.4
Peaxi162Scf00670g00346 Petunia axillaris HOM05D005980 ORTHO05D007618 5.7e-199 698.0 473 75.3
Cc09_g08730 Coffea canephora HOM05D005980 ORTHO05D007618 3.7e-198 695.3 501 71.3
Aqoxy4G00005 Aquilegia oxysepala HOM05D005980 ORTHO05D007618 8.3e-198 694.1 488 70.9
ATR1098G083 Amborella trichopoda HOM05D005980 ORTHO05D007618 1.3e-195 686.8 520 68.7
DCAR_003883 Daucus carota HOM05D005980 ORTHO05D007618 5.0e-195 684.9 499 70.7
Gohir.A05G146100 Gossypium hirsutum HOM05D005980 ORTHO05D007618 6.5e-195 684.5 507 69.4
PSO675G5271 Papaver somniferum HOM05D005980 ORTHO05D007618 2.5e-194 682.6 535 65.4
TWI73G1267 Tripterygium wilfordii HOM05D005980 ORTHO05D007618 9.4e-194 680.6 506 70.0
PSO541G1780 Papaver somniferum HOM05D005980 ORTHO05D007618 2.7e-193 679.1 535 65.0
Gorai.009G152600 Gossypium raimondii HOM05D005980 ORTHO05D007618 3.6e-193 678.7 474 72.2
Dinv32210 Davidia involucrata HOM05D005980 ORTHO05D007618 4.7e-193 678.3 443 77.4
Manes.15G125300 Manihot esculenta HOM05D005980 ORTHO05D007618 8.3e-190 667.5 451 77.2
Migut.M01863 Erythranthe guttata HOM05D005980 ORTHO05D007618 1.1e-189 667.2 542 64.9
Lj1A1168T68 Lonicera japonica HOM05D005980 ORTHO05D007618 5.4e-189 664.8 504 69.2
THA.LOC104820671 Tarenaya hassleriana HOM05D005980 ORTHO05D007618 1.2e-188 663.7 523 67.1
AUR62025366 Chenopodium quinoa HOM05D005980 ORTHO05D007618 2.7e-188 662.5 533 65.3
Nitab4.5_0005963g0020 Nicotiana tabacum HOM05D005980 ORTHO05D007618 4.5e-188 661.8 538 65.6
EL10Ac1g01827 Beta vulgaris HOM05D005980 ORTHO05D007618 1.3e-187 660.2 471 70.3
Lj6g0019056 Lotus japonicus HOM05D005980 ORTHO05D007618 5.0e-187 658.3 517 67.7
FAN25G0178 Fragaria x ananassa HOM05D005980 ORTHO05D007618 6.6e-187 657.9 591 62.3
AUR62028384 Chenopodium quinoa HOM05D005980 ORTHO05D007618 5.6e-186 654.8 532 64.3
SGA_v2.0_scaffold51G18642 Striga asiatica HOM05D005980 ORTHO05D007618 9.5e-186 654.1 529 65.4
A05p11020 Brassica napus HOM05D005980 ORTHO05D007618 1.6e-185 653.3 543 64.5
BraA05t20047Z Brassica rapa HOM05D005980 ORTHO05D007618 2.1e-185 652.9 543 64.1
AT2G34640 Arabidopsis thaliana HOM05D005980 ORTHO05D007618 4.0e-184 648.7 504 67.1
BcaC02g11540 Brassica carinata HOM05D005980 ORTHO05D007618 5.2e-184 648.3 546 63.6
BolC4t23002H Brassica oleracea HOM05D005980 ORTHO05D007618 5.2e-184 648.3 546 63.6
Aa31LG10G6710 Aethionema arabicum HOM05D005980 ORTHO05D007618 6.8e-184 647.9 464 71.8
C04p14140 Brassica napus HOM05D005980 ORTHO05D007618 2.0e-183 646.4 546 63.2
CARHR128740 Cardamine hirsuta HOM05D005980 ORTHO05D007618 7.5e-183 644.4 548 63.1
Psat1g191560 Pisum sativum HOM05D005980 ORTHO05D007618 1.7e-182 643.3 505 65.9
SalBow8G1809 Salvia bowleyana HOM05D005980 ORTHO05D007618 2.9e-182 642.5 536 64.4
CANSAT35G0447 Cannabis sativa HOM05D005980 ORTHO05D007618 4.9e-182 641.7 547 63.3
Rhsim13G0118300 Rhododendron simsii HOM05D005980 ORTHO05D007618 6.4e-182 641.3 533 65.3
AL4G30630 Arabidopsis lyrata HOM05D005980 ORTHO05D007618 8.3e-182 641.0 504 66.7
Carub.0004s1633 Capsella rubella HOM05D005980 ORTHO05D007618 8.3e-182 641.0 504 66.7
Glyma.13G221300 Glycine max HOM05D005980 ORTHO05D007618 8.3e-182 641.0 478 70.5
Medtr2g018740 Medicago truncatula HOM05D005980 ORTHO05D007618 1.6e-180 636.7 520 64.4
Phvul.006G168100 Phaseolus vulgaris HOM05D005980 ORTHO05D007618 2.3e-179 632.9 478 68.0
arahy.Tifrunner.gnm1.ann1.G1ZF0U Arachis hypogaea HOM05D005980 ORTHO05D007618 3.0e-179 632.5 505 66.3
arahy.Tifrunner.gnm1.ann1.PI6078 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.5e-178 630.2 505 65.9
Thhalv10016502m.g Eutrema salsugineum HOM05D005980 ORTHO05D007618 5.6e-178 628.2 520 64.8
VMungo0540G0170 Vigna mungo HOM05D005980 ORTHO05D007618 3.6e-177 625.5 481 67.6
Sp4g16910 Schrenkiella parvula HOM05D005980 ORTHO05D007618 6.2e-177 624.8 548 61.5
TPR.G26225 Trifolium pratense HOM05D005980 ORTHO05D007618 1.9e-173 613.2 533 60.8
Lalb_Chr18g0055171 Lupinus albus HOM05D005980 ORTHO05D007618 3.2e-173 612.5 509 62.7
Lj2C323G3 Lonicera japonica HOM05D005980 ORTHO05D007618 6.0e-172 608.2 496 65.5
Ah.12g059810 Amaranthus hybridus HOM05D005980 ORTHO05D007618 4.7e-169 598.6 468 66.0
Ca_00513_v3 Cicer arietinum L. HOM05D005980 ORTHO05D007618 1.4e-168 597.0 462 67.7
Sc05g0005970 Simmondsia chinensis HOM05D005980 ORTHO05D007618 3.1e-168 595.9 459 66.9
HanXRQChr10g0301191 Helianthus annuus HOM05D005980 ORTHO05D007618 6.8e-168 594.7 512 61.7
Lsat_1_v5_gn_9_33800 Lactuca sativa HOM05D005980 ORTHO05D007618 9.8e-167 590.9 509 61.5
vmacro03427 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 6.4e-166 588.2 427 70.0
BcaNung07262 Brassica carinata HOM05D005980 ORTHO05D007618 2.8e-161 572.8 430 69.5
unitig_578.g16128 Utricularia gibba HOM05D005980 ORTHO05D007618 3.6e-161 572.4 478 62.8
Os01g0769900 Oryza sativa ssp. japonica HOM05D005980 ORTHO05D007618 3.2e-149 532.7 499 58.5
Zm00001eb152010 Zea mays HOM05D005980 ORTHO05D007618 7.8e-148 528.1 501 57.9
ECA247G3302 Erigeron canadensis HOM05D005980 ORTHO05D007618 3.3e-146 522.7 447 60.9
MD05G1278700 Malus domestica HOM05D005980 ORTHO05D007618 4.5e-111 406.0 294 72.4
HPP92_001893 Vanilla planifolia HOM05D005980 ORTHO05D007618 4.1e-104 382.9 327 58.1
Hma1.2p1_0586F.1_g183820 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 8.5e-94 348.6 262 68.7
MBI02_g18932_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 5.5e-93 345.9 265 66.8
Cpa.g.sc17.57 Carica papaya HOM05D005980 ORTHO05D007618 1.8e-91 340.9 266 66.9
AagrBONN_evm.TU.Sc2ySwM_228.94 Anthoceros agrestis HOM05D005980 ORTHO05D007618 8.2e-89 332.0 427 45.0
CDE01G0059 Ceratophyllum demersum HOM05D005980 ORTHO05D007618 1.5e-82 311.2 311 55.3
Mapoly0061s0053 Marchantia polymorpha HOM05D005980 ORTHO05D007618 7.7e-79 298.9 427 39.8
Cpa.g.sc17.56 Carica papaya HOM05D005980 ORTHO05D007618 1.2e-76 291.6 167 81.4
Cpa.g.c47879 Carica papaya HOM05D005980 ORTHO05D007618 2.8e-76 290.4 198 73.7
Pp3c3_26950 Physcomitrium patens HOM05D005980 ORTHO05D007618 2.0e-66 257.7 490 35.3
Pp3c10_12300 Physcomitrium patens HOM05D005980 ORTHO05D007618 3.4e-66 256.9 380 40.0
Hma1.2p1_0581F.1_g182930 Hydrangea macrophylla HOM05D005980 ORTHO05D007618 1.2e-55 221.9 147 73.5
SGA_v2.0_scaffold230G43391 Striga asiatica HOM05D005980 ORTHO05D007618 3.9e-54 216.9 125 76.8
SGA_v2.0_scaffold6G03478 Striga asiatica HOM05D005980 ORTHO05D007618 2.1e-52 211.1 125 77.6
arahy.Tifrunner.gnm1.ann1.D5DAI6 Arachis hypogaea HOM05D005980 ORTHO05D007618 1.8e-51 208.0 261 47.5
HPP92_001892 Vanilla planifolia HOM05D005980 ORTHO05D007618 2.2e-49 201.1 167 63.5
Lsat_1_v5_gn_1_94041 Lactuca sativa HOM05D005980 ORTHO05D007618 3.7e-49 200.3 194 54.6
CBR_g48045 Chara braunii HOM05D005980 ORTHO05D007618 4.4e-42 176.8 336 35.1
MD05G1278800 Malus domestica HOM05D005980 ORTHO05D007618 7.6e-34 149.4 80 85.0
Cpa.g.sc17.55 Carica papaya HOM05D005980 ORTHO05D007618 1.9e-32 144.8 109 74.3
SEGI_30301 Sequoiadendron giganteum HOM05D005980 ORTHO05D007618 1.6e-31 141.7 221 42.5
Glyma.15G091200 Glycine max HOM05D005980 ORTHO05D007618 1.3e-25 122.1 92 71.7
MBI02_g26594_MAGBIO Magnolia biondii HOM05D005980 ORTHO05D007618 6.0e-23 113.2 83 71.1
Haze_05663 Corylus avellana HOM05D005980 ORTHO05D007618 8.1e-20 102.8 114 54.4
HanXRQChr10g0301121 Helianthus annuus HOM05D005980 ORTHO05D007618 1.1e-19 102.4 93 57.0
arahy.Tifrunner.gnm1.ann1.MPA65D Arachis hypogaea HOM05D005980 ORTHO05D007618 8.4e-17 92.8 53 79.2
vmacro03428 Vaccinium macrocarpon HOM05D005980 ORTHO05D007618 4.2e-16 90.5 102 54.9
Actinidia33672 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.6e-15 88.6 77 63.6
Lsat_1_v5_gn_1_94021 Lactuca sativa HOM05D005980 ORTHO05D007618 3.9e-14 84.0 136 44.9
MD05G1278900 Malus domestica HOM05D005980 ORTHO05D007618 8.7e-14 82.8 72 65.3
Lsat_1_v5_gn_7_71901 Lactuca sativa HOM05D002457 ORTHO05D005750 4.3e-13 80.5 93 46.2
Actinidia33673 Actinidia chinensis HOM05D005980 ORTHO05D007618 1.8e-11 75.1 128 43.8
MSTRG.16269 Avicennia marina HOM05D005980 ORTHO05D007618 4.0e-11 73.9 49 67.3
Cpa.g.c48158 Carica papaya HOM05D005980 ORTHO05D007618 7.1e-08 63.2 32 87.5


User provided reference genes

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