Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 3.4e-253 877.9 443 100.0
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.6e-224 780.8 432 91.0
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 3.9e-217 758.1 432 89.6
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 6.2e-207 724.2 431 86.3
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 7.4e-192 674.1 406 84.0
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 5.0e-132 475.3 443 57.6
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 8.9e-129 464.5 437 56.5
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.5e-128 463.8 443 56.7
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 3.5e-125 452.6 449 53.9
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.8e-121 440.3 444 53.4
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 2.0e-120 436.8 460 53.0
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 2.2e-119 433.3 481 50.5
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 3.7e-119 432.6 435 53.1
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 3.2e-118 429.5 442 52.9
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 5.4e-118 428.7 445 51.9
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.0e-117 425.2 447 51.5
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 1.7e-116 423.7 443 50.6
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 1.1e-115 421.0 515 48.3
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.5e-115 420.6 452 48.9
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.9e-115 420.2 445 50.8
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.5e-115 419.9 452 49.1
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 3.3e-115 419.5 444 53.6
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 5.6e-115 418.7 431 52.4
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 3.6e-114 416.0 434 51.2
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 4.7e-114 415.6 434 50.9
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.3e-113 413.3 436 53.0
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 2.3e-113 413.3 436 53.2
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 2.0e-112 410.2 497 46.9
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 3.4e-112 409.5 427 54.1
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 5.8e-112 408.7 436 50.9
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 7.6e-112 408.3 436 52.8
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.3e-111 407.5 450 52.4
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 7.1e-110 401.7 417 54.4
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 9.2e-110 401.4 440 51.4
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 9.2e-110 401.4 511 45.6
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 2.7e-109 399.8 436 49.8
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 1.3e-108 397.5 440 48.6
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 1.1e-107 394.4 437 48.3
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 2.5e-107 393.3 480 46.5
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 3.3e-107 392.9 448 49.1
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 1.2e-106 391.0 433 47.6
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.6e-106 390.6 453 47.5
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 2.1e-106 390.2 368 54.9
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 2.1e-106 390.2 271 70.1
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.8e-106 389.8 435 47.6
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 2.8e-106 389.8 434 47.9
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 3.6e-106 389.4 433 47.1
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 4.0e-105 386.0 460 46.7
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 3.4e-104 382.9 460 46.7
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 7.6e-104 381.7 344 56.4
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 2.2e-103 380.2 417 49.2
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 4.9e-103 379.0 438 49.1
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 6.4e-103 378.6 435 45.7
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 8.4e-103 378.3 552 41.8
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.9e-102 377.1 267 64.8
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 4.2e-102 375.9 449 46.1
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 1.2e-101 374.4 441 48.8
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 1.2e-101 374.4 439 48.3
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 1.6e-101 374.0 448 45.5
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 6.0e-101 372.1 363 52.6
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 7.8e-101 371.7 235 70.2
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.0e-100 369.8 235 70.2
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.1e-99 367.9 448 46.9
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.5e-99 367.5 360 53.9
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.5e-99 366.7 429 47.6
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 7.3e-99 365.2 420 48.3
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 7.3e-99 365.2 571 40.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 2.1e-98 363.6 454 43.0
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 6.2e-98 362.1 450 43.6
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 8.1e-98 361.7 446 46.4
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 3.1e-97 359.8 461 42.5
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.0e-96 357.1 449 45.9
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 4.4e-96 355.9 435 44.8
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 5.8e-96 355.5 405 46.7
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 2.2e-95 353.6 447 45.2
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.2e-95 353.6 435 44.8
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 8.4e-95 351.7 438 49.3
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 1.2e-93 347.8 339 53.7
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 4.6e-93 345.9 445 48.5
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 2.3e-92 343.6 446 44.4
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 6.6e-92 342.0 324 53.1
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 8.7e-92 341.7 452 47.1
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.5e-91 340.9 426 46.2
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.9e-91 340.5 443 47.0
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.9e-91 340.5 438 45.7
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 1.3e-90 337.8 441 42.9
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.3e-90 337.8 439 44.9
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 3.6e-90 336.3 256 59.0
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 4.8e-90 335.9 430 42.6
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.8e-89 334.0 447 46.1
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 1.8e-89 334.0 361 52.9
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 7.6e-88 328.6 444 42.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 9.9e-88 328.2 475 44.6
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 2.9e-87 326.6 366 49.5
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 3.8e-87 326.2 456 44.7
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 7.1e-86 322.0 439 42.8
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 6.0e-85 318.9 256 59.4
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 1.8e-84 317.4 416 47.1
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 4.3e-83 312.8 361 49.6
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 7.4e-83 312.0 381 48.3
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 6.9e-81 305.4 369 49.3
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 1.0e-79 301.6 465 38.1
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.4e-78 297.7 271 54.2
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 7.1e-78 295.4 430 41.6
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 1.5e-75 287.7 462 41.1
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 7.4e-75 285.4 319 48.6
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 2.4e-73 280.4 443 39.7
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 1.5e-72 277.7 402 43.8
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 2.0e-72 277.3 200 62.0
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 7.6e-72 275.4 349 45.8
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.6e-69 266.2 448 39.7
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 6.1e-69 265.8 424 38.2
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 6.1e-69 265.8 472 35.4
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 5.1e-68 262.7 337 47.8
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 5.1e-68 262.7 440 40.0
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 4.3e-67 259.6 415 37.1
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 4.3e-67 259.6 250 50.4
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.3e-66 258.1 342 45.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 2.1e-61 240.7 184 63.0
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.6e-61 239.6 351 43.3
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 1.4e-60 238.0 386 42.2
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 6.7e-60 235.7 240 47.1
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 6.3e-58 229.2 434 34.6
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 1.4e-54 218.0 464 34.7
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.1e-49 201.8 325 40.3
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 1.4e-49 201.4 133 66.9
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 1.4e-44 184.9 258 46.9
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 3.5e-40 170.2 183 44.8
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.0e-36 156.8 278 37.1
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 4.7e-29 133.3 164 44.5
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 2.9e-23 114.0 159 42.1
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 6.1e-21 106.3 393 29.0
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.3e-20 104.4 125 43.2
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 2.2e-18 97.8 114 40.4
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-16 91.7 81 58.0
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 2.7e-16 90.9 71 54.9
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.3e-15 88.6 65 52.3
Lj1A1166G81 Lonicera japonica HOM05D004664 ORTHO05D005526 6.6e-15 86.3 184 34.2
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 6.6e-15 86.3 67 49.3
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 1.9e-14 84.7 107 45.8
Cc09_g09380 Coffea canephora HOM05D004664 ORTHO05D005526 2.6e-11 74.3 214 29.4
Lj6C128G4 Lonicera japonica HOM05D004664 ORTHO05D005526 2.6e-11 74.3 189 31.2
GSVIVG01004331001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.7e-10 71.6 177 33.9
CiPaw.09G112900 Carya illinoinensis HOM05D004664 ORTHO05D005526 3.7e-10 70.5 140 37.1


User provided reference genes

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