Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG01G004620 Citrullus lanatus HOM05D004662 ORTHO05D005771 7.1e-165 583.9 314 100.0
ClCG01G004580 Citrullus lanatus HOM05D004662 ORTHO05D005771 1.3e-158 563.1 304 100.0
MELO3C023475.2 Cucumis melo HOM05D004662 ORTHO05D005771 2.5e-157 558.9 304 99.3
CsaV3_7G031820 Cucumis sativus L. HOM05D004662 ORTHO05D005771 5.5e-157 557.8 304 99.0
ClCG09G016740 Citrullus lanatus HOM05D004662 ORTHO05D005771 3.0e-155 552.0 304 98.4
Sed0008619 Sechium edule HOM05D004662 ORTHO05D005771 1.9e-154 549.3 304 97.4
Haze_08022 Corylus avellana HOM05D004662 ORTHO05D005771 5.7e-138 494.6 308 85.1
Prupe.7G048200 Prunus persica HOM05D004662 ORTHO05D005771 1.1e-136 490.3 304 85.2
Cfa012638 Carpinus fangiana HOM05D004662 ORTHO05D005771 1.8e-136 489.6 308 85.7
Atru.chr10.136 Acer truncatum HOM05D004662 ORTHO05D005771 4.1e-136 488.4 304 86.2
arahy.Tifrunner.gnm1.ann1.MTS4VB Arachis hypogaea HOM05D004662 ORTHO05D005771 4.1e-136 488.4 302 87.4
CANSAT21G0749 Cannabis sativa HOM05D004662 ORTHO05D005771 1.5e-135 486.5 306 83.3
MD12G1216200 Malus domestica HOM05D004662 ORTHO05D005771 1.0e-134 483.8 304 83.6
Actinidia06666 Actinidia chinensis HOM05D004662 ORTHO05D005771 1.7e-134 483.0 303 84.8
HanXRQChr03g0092051 Helianthus annuus HOM05D004662 ORTHO05D005771 5.0e-134 481.5 304 83.6
CiPaw.11G076400 Carya illinoinensis HOM05D004662 ORTHO05D005771 6.5e-134 481.1 304 84.9
Medtr5g095510 Medicago truncatula HOM05D004662 ORTHO05D005771 6.5e-134 481.1 305 81.3
PGR142G0905 Punica granatum HOM05D004662 ORTHO05D005771 1.1e-133 480.3 306 83.0
Eucgr.C00068 Eucalyptus grandis HOM05D004662 ORTHO05D005771 1.4e-133 479.9 306 83.0
TWI75G1338 Tripterygium wilfordii HOM05D004662 ORTHO05D005771 2.5e-133 479.2 304 83.9
Ciclev10016087m.g Citrus clementina HOM05D004662 ORTHO05D005771 4.2e-133 478.4 304 82.6
TPR.G8614 Trifolium pratense HOM05D004662 ORTHO05D005771 4.2e-133 478.4 305 83.6
QL09p054497 Quercus lobata HOM05D004662 ORTHO05D005771 7.2e-133 477.6 303 84.2
Gohir.D03G048900 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.2e-132 476.9 304 84.5
Gorai.003G050200 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.2e-132 476.9 304 84.5
Duzib187G0757 Durio zibethinus HOM05D004662 ORTHO05D005771 2.1e-132 476.1 304 84.2
Potri.017G060200 Populus trichocarpa HOM05D004662 ORTHO05D005771 3.6e-132 475.3 306 84.0
Sabra17G0054100 Salix brachista HOM05D004662 ORTHO05D005771 4.7e-132 474.9 304 83.6
Ca_05756_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.0e-131 473.8 305 82.3
Ca_07798_v3 Cicer arietinum L. HOM05D004662 ORTHO05D005771 1.4e-131 473.4 305 82.0
Gohir.A02G138300 Gossypium hirsutum HOM05D004662 ORTHO05D005771 1.4e-131 473.4 304 84.5
Lj3g0018695 Lotus japonicus HOM05D004662 ORTHO05D005771 1.4e-131 473.4 305 80.7
Psat2g008160 Pisum sativum HOM05D004662 ORTHO05D005771 3.3e-130 468.8 305 79.3
CAN.G112.7 Capsicum annuum HOM05D004662 ORTHO05D005771 4.4e-130 468.4 304 80.6
RcHm_v2.0_Chr4g0411521 Rosa chinensis HOM05D004662 ORTHO05D005771 1.7e-129 466.5 305 83.0
Lj4A308T25 Lonicera japonica HOM05D004662 ORTHO05D005771 2.2e-129 466.1 304 80.6
Cpa.g.sc42.90 Carica papaya HOM05D004662 ORTHO05D005771 2.8e-129 465.7 305 83.6
Rhsim10G0141700 Rhododendron simsii HOM05D004662 ORTHO05D005771 2.8e-129 465.7 304 82.9
ECA240G2833 Erigeron canadensis HOM05D004662 ORTHO05D005771 3.7e-129 465.3 305 82.6
FvH4_4g12620 Fragaria vesca HOM05D004662 ORTHO05D005771 4.8e-129 464.9 305 83.3
FAN12G2661 Fragaria x ananassa HOM05D004662 ORTHO05D005771 4.8e-129 464.9 305 83.3
Thecc.01G121500 Theobroma cacao HOM05D004662 ORTHO05D005771 4.8e-129 464.9 305 82.0
CSS0002771 Camellia sinensis var. sinensis HOM05D004662 ORTHO05D005771 6.3e-129 464.5 306 84.0
FAN17G2854 Fragaria x ananassa HOM05D004662 ORTHO05D005771 6.3e-129 464.5 304 83.2
Ah.05g168710 Amaranthus hybridus HOM05D004662 ORTHO05D005771 8.2e-129 464.2 304 83.6
EL10Ac8g20458 Beta vulgaris HOM05D004662 ORTHO05D005771 8.2e-129 464.2 298 82.2
Dinv09932 Davidia involucrata HOM05D004662 ORTHO05D005771 8.2e-129 464.2 303 83.8
QL12p002363 Quercus lobata HOM05D004662 ORTHO05D005771 1.1e-128 463.8 303 81.5
Lalb_Chr03g0030851 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-128 462.6 306 81.7
Lalb_Chr03g0030921 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-128 462.6 306 81.7
Lalb_Chr03g0030931 Lupinus albus HOM05D004662 ORTHO05D005771 2.4e-128 462.6 306 81.7
CDE08G1373 Ceratophyllum demersum HOM05D004662 ORTHO05D005771 5.3e-128 461.5 304 79.3
DCAR_011479 Daucus carota HOM05D004662 ORTHO05D005771 5.3e-128 461.5 304 79.6
FAN07G1901 Fragaria x ananassa HOM05D004662 ORTHO05D005771 5.3e-128 461.5 305 83.0
Sc23g0004520 Simmondsia chinensis HOM05D004662 ORTHO05D005771 7.0e-128 461.1 307 82.4
COL.COLO4_22423 Corchorus olitorius HOM05D004662 ORTHO05D005771 1.2e-127 460.3 305 79.7
DCAR_001862 Daucus carota HOM05D004662 ORTHO05D005771 1.5e-127 459.9 304 79.3
Nitab4.5_0009675g0010 Nicotiana tabacum HOM05D004662 ORTHO05D005771 1.5e-127 459.9 304 81.2
Aqoxy6G00053 Aquilegia oxysepala HOM05D004662 ORTHO05D005771 2.6e-127 459.1 304 82.2
Manes.01G056600 Manihot esculenta HOM05D004662 ORTHO05D005771 3.5e-127 458.8 306 81.0
Migut.M00378 Erythranthe guttata HOM05D004662 ORTHO05D005771 4.5e-127 458.4 304 78.3
PSO210G1432 Papaver somniferum HOM05D004662 ORTHO05D005771 4.5e-127 458.4 304 78.9
Sopen05g029520 Solanum pennellii HOM05D004662 ORTHO05D005771 4.5e-127 458.4 304 78.9
Nitab4.5_0000777g0160 Nicotiana tabacum HOM05D004662 ORTHO05D005771 5.9e-127 458.0 302 81.1
PGSC0003DMG400006987 Solanum tuberosum HOM05D004662 ORTHO05D005771 1.0e-126 457.2 304 78.9
Solyc05g051070.3 Solanum lycopersicum HOM05D004662 ORTHO05D005771 1.3e-126 456.8 302 78.8
THA.LOC104815455 Tarenaya hassleriana HOM05D004662 ORTHO05D005771 1.3e-126 456.8 304 81.6
MSTRG.2689 Avicennia marina HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 81.2
SalBow5G3393 Salvia bowleyana HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 78.0
vmacro12830 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 1.7e-126 456.4 304 81.2
Glyma.06G234100 Glycine max HOM05D004662 ORTHO05D005771 5.0e-126 454.9 304 81.2
SGA_v2.0_scaffold137G35115 Striga asiatica HOM05D004662 ORTHO05D005771 1.1e-125 453.8 304 78.6
Glyma.14G078500 Glycine max HOM05D004662 ORTHO05D005771 2.5e-125 452.6 304 78.3
Peaxi162Scf00424g00027 Petunia axillaris HOM05D004662 ORTHO05D005771 2.5e-125 452.6 302 77.8
Aa31LG8G5630 Aethionema arabicum HOM05D004662 ORTHO05D005771 4.2e-125 451.8 305 78.0
Cc07_g17380 Coffea canephora HOM05D004662 ORTHO05D005771 4.2e-125 451.8 304 78.9
Glyma.09G114600 Glycine max HOM05D004662 ORTHO05D005771 5.5e-125 451.4 304 78.3
Nn5g28723 Nelumbo nucifera HOM05D004662 ORTHO05D005771 5.5e-125 451.4 304 81.2
TAR376G0935 Trochodendron aralioides HOM05D004662 ORTHO05D005771 7.2e-125 451.1 304 81.2
GSVIVG01026585001 Vitis vinifera HOM05D004662 ORTHO05D005771 1.2e-124 450.3 304 78.6
Lsat_1_v5_gn_3_121781 Lactuca sativa HOM05D004662 ORTHO05D005771 6.1e-124 448.0 289 80.3
Peaxi162Scf00751g00215 Petunia axillaris HOM05D004662 ORTHO05D005771 5.2e-123 444.9 303 76.6
HPP92_002769 Vanilla planifolia HOM05D004662 ORTHO05D005771 6.7e-123 444.5 305 75.7
CARHR094200 Cardamine hirsuta HOM05D004662 ORTHO05D005771 4.4e-122 441.8 304 78.6
Thhalv10021236m.g Eutrema salsugineum HOM05D004662 ORTHO05D005771 4.4e-122 441.8 304 76.3
SHI06523 Sapria himalayana HOM05D004662 ORTHO05D005771 7.5e-122 441.0 304 79.6
Sp3g16880 Schrenkiella parvula HOM05D004662 ORTHO05D005771 9.7e-122 440.7 304 77.3
AUR62014898 Chenopodium quinoa HOM05D004662 ORTHO05D005771 1.3e-121 440.3 304 77.0
ATR0051G034 Amborella trichopoda HOM05D004662 ORTHO05D005771 4.1e-120 435.3 304 75.3
AUR62031104 Chenopodium quinoa HOM05D004662 ORTHO05D005771 4.1e-120 435.3 298 77.2
AT3G18790 Arabidopsis thaliana HOM05D004662 ORTHO05D005771 5.3e-120 434.9 304 78.6
SEGI_04038 Sequoiadendron giganteum HOM05D004662 ORTHO05D005771 5.3e-120 434.9 304 75.3
AL3G32170 Arabidopsis lyrata HOM05D004662 ORTHO05D005771 1.2e-119 433.7 304 78.0
unitig_699.g19713 Utricularia gibba HOM05D004662 ORTHO05D005771 1.6e-119 433.3 304 76.0
Carub.0003s1861 Capsella rubella HOM05D004662 ORTHO05D005771 7.7e-119 431.0 304 77.6
TAR628G0746 Trochodendron aralioides HOM05D004662 ORTHO05D005771 1.3e-118 430.3 304 76.6
BcaB06g25932 Brassica carinata HOM05D004662 ORTHO05D005771 2.9e-118 429.1 313 73.5
BraA05t21923Z Brassica rapa HOM05D004662 ORTHO05D005771 5.0e-118 428.3 304 75.7
BcaC05g28571 Brassica carinata HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 76.3
A05p30810 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 75.0
C05p46730 Brassica napus HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 76.3
BolC5t33400H Brassica oleracea HOM05D004662 ORTHO05D005771 1.1e-117 427.2 304 76.3
BcaB04g20746 Brassica carinata HOM05D004662 ORTHO05D005771 7.2e-117 424.5 304 74.0
Phvul.008G233000 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.2e-116 423.7 304 76.0
ATR0772G105 Amborella trichopoda HOM05D004662 ORTHO05D005771 2.7e-116 422.5 304 73.0
MBI17_g31489_MAGBIO Magnolia biondii HOM05D004662 ORTHO05D005771 2.7e-116 422.5 304 72.7
Lalb_Chr01g0006671 Lupinus albus HOM05D004662 ORTHO05D005771 3.6e-116 422.2 305 77.4
Hma1.2p1_0006F.1_g004870 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.4e-115 420.2 301 77.4
Phvul.006G049400 Phaseolus vulgaris HOM05D004662 ORTHO05D005771 1.8e-115 419.9 304 76.0
Zm00001eb246450 Zea mays HOM05D004662 ORTHO05D005771 1.6e-111 406.8 312 72.4
Gohir.A03G042500 Gossypium hirsutum HOM05D004662 ORTHO05D005771 3.8e-110 402.1 282 78.7
Mapoly0026s0083 Marchantia polymorpha HOM05D004662 ORTHO05D005771 1.7e-105 386.7 304 67.4
AagrBONN_evm.TU.Sc2ySwM_368.1726 Anthoceros agrestis HOM05D004662 ORTHO05D005771 8.3e-105 384.4 306 69.0
C01p45240 Brassica napus HOM05D004662 ORTHO05D005771 1.9e-101 373.2 305 68.9
Prupe.6G322400 Prunus persica HOM05D004662 ORTHO05D005771 1.6e-100 370.2 292 71.9
Pp3c13_15060 Physcomitrium patens HOM05D004662 ORTHO05D005771 3.4e-98 362.5 304 63.2
CBR_g84973 Chara braunii HOM05D004662 ORTHO05D005771 6.2e-92 341.7 325 61.2
SMO274G0029 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 4.4e-90 335.5 305 59.0
Peaxi162Scf00134g00137 Petunia axillaris HOM05D004662 ORTHO05D005771 2.9e-89 332.8 195 82.1
Sc23g0004080 Simmondsia chinensis HOM05D004662 ORTHO05D005771 9.5e-85 317.8 254 70.9
COL.COLO4_10520 Corchorus olitorius HOM05D004662 ORTHO05D005771 9.8e-82 307.8 193 80.8
Cre10.g427150 Chlamydomonas reinhardtii HOM05D004662 ORTHO05D005771 2.2e-81 306.6 300 56.7
BcaC09g48849 Brassica carinata HOM05D004662 ORTHO05D005771 2.9e-81 306.2 254 66.5
SMO134G0084 Selaginella moellendorffii HOM05D004662 ORTHO05D005771 9.2e-80 301.2 305 54.1
Dinv15114 Davidia involucrata HOM05D004662 ORTHO05D005771 1.6e-76 290.4 304 57.9
Hma1.2p1_0006F.1_g004860 Hydrangea macrophylla HOM05D004662 ORTHO05D005771 1.6e-68 263.8 134 96.3
MCO03G092 Micromonas commoda HOM05D004662 ORTHO05D005771 2.4e-67 260.0 303 50.5
vmacro12447 Vaccinium macrocarpon HOM05D004662 ORTHO05D005771 3.5e-63 246.1 198 69.7
Sc23g0003810 Simmondsia chinensis HOM05D004662 ORTHO05D005771 3.9e-62 242.7 271 55.4
VMungo1309G1891 Vigna mungo HOM05D004662 ORTHO05D005771 5.8e-58 228.8 193 68.4
Os02g0602500 Oryza sativa ssp. japonica HOM05D004662 ORTHO05D005771 9.9e-58 228.0 204 65.7
Gorai.003G131300 Gossypium raimondii HOM05D004662 ORTHO05D005771 1.2e-50 204.5 195 61.0
PRCOL_00003362 Prasinoderma coloniale HOM05D004662 ORTHO05D005771 4.2e-48 196.1 311 43.7
Sc23g0004530 Simmondsia chinensis HOM05D004662 ORTHO05D005771 5.5e-48 195.7 169 70.4
Gohir.D03G125150 Gossypium hirsutum HOM05D004662 ORTHO05D005771 2.1e-47 193.7 195 59.0
CAN.G184.48 Capsicum annuum HOM05D004662 ORTHO05D005771 2.7e-47 193.4 296 45.3
Dinv05182 Davidia involucrata HOM05D004662 ORTHO05D005771 9.0e-43 178.3 230 46.5
Haze_26219 Corylus avellana HOM05D004662 ORTHO05D005771 2.9e-41 173.3 199 48.7
Atru.chr9.1310 Acer truncatum HOM05D004662 ORTHO05D005771 2.5e-40 170.2 111 78.4
Zm00001eb267310 Zea mays HOM05D004662 ORTHO05D005771 9.6e-37 158.3 104 73.1
VMungo1309G1313 Vigna mungo HOM05D004662 ORTHO05D005771 2.9e-33 146.7 173 49.1
Sabra16G0204000 Salix brachista HOM05D004662 ORTHO05D005771 6.1e-31 139.0 262 44.7
Zm00001eb424510 Zea mays HOM05D004662 ORTHO05D005771 8.7e-30 135.2 102 65.7
Zm00001eb116840 Zea mays HOM05D004662 ORTHO05D441867 6.7e-22 109.0 77 70.1
Zm00001eb143820 Zea mays HOM05D004662 ORTHO05D005771 3.3e-21 106.7 77 67.5
BraA01t03647Z Brassica rapa HOM05D004662 ORTHO05D005771 5.7e-21 105.9 304 33.9
COL.COLO4_20103 Corchorus olitorius HOM05D000161 ORTHO05D000111 7.4e-21 105.5 149 52.3
A01p35650 Brassica napus HOM05D004662 ORTHO05D005771 1.3e-20 104.8 304 33.6
Zm00001eb040030 Zea mays HOM05D000558 ORTHO05D003075 4.8e-20 102.8 61 77.0
Zm00001eb162730 Zea mays HOM05D000558 ORTHO05D003075 9.1e-19 98.6 66 71.2
VMungo0540G2311 Vigna mungo HOM05D004662 ORTHO05D005771 1.7e-17 94.4 118 59.3
VMungo1309G1979 Vigna mungo HOM05D004662 ORTHO05D005771 2.2e-17 94.0 117 56.4
VMungo1127G1535 Vigna mungo HOM05D004662 ORTHO05D005771 2.7e-15 87.0 99 58.6
VMungo0720G0221 Vigna mungo HOM05D004662 ORTHO05D005771 1.8e-11 74.3 98 53.1
COL.COLO4_03460 Corchorus olitorius HOM05D004662 ORTHO05D157366 2.4e-11 73.9 146 43.8
CAN.G1058.32 Capsicum annuum HOM05D004662 ORTHO05D005771 4.1e-11 73.2 62 71.0


User provided reference genes

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