Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.7e-145 518.8 301 100.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 4.2e-138 495.0 301 95.7
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 6.2e-134 481.1 301 93.7
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 2.6e-132 475.7 300 92.3
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 7.6e-124 447.6 302 88.7
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 7.2e-114 414.5 299 85.6
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 7.2e-114 414.5 299 85.6
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 5.3e-109 398.3 302 79.8
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 9.1e-109 397.5 303 79.2
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 3.4e-108 395.6 299 77.9
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 4.5e-108 395.2 299 79.9
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.7e-108 394.4 300 79.7
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 1.3e-107 393.7 299 76.3
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 8.5e-107 391.0 299 78.3
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 1.1e-106 390.6 304 77.3
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.1e-106 390.6 308 75.0
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 3.2e-106 389.0 299 76.3
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 7.2e-106 387.9 301 77.1
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 9.4e-106 387.5 299 78.9
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.2e-105 387.1 303 74.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 1.2e-105 387.1 303 76.6
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.2e-105 387.1 299 75.3
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 1.6e-105 386.7 300 78.0
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 2.1e-105 386.3 306 75.8
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 2.1e-105 386.3 303 76.6
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.1e-105 386.3 299 78.3
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.1e-105 386.3 304 77.3
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 2.7e-105 386.0 311 76.8
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.6e-105 385.6 303 76.6
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 7.9e-105 384.4 312 74.4
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 1.8e-104 383.3 264 81.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.3e-104 382.9 307 75.6
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.3e-104 382.9 318 73.6
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.0e-104 382.5 300 74.7
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 3.9e-104 382.1 304 75.7
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 3.9e-104 382.1 300 74.7
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 3.9e-104 382.1 303 76.6
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 3.9e-104 382.1 303 75.9
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 6.7e-104 381.3 266 83.5
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 8.8e-104 380.9 308 76.9
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 8.8e-104 380.9 292 78.1
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 1.5e-103 380.2 291 79.4
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.6e-103 379.4 297 75.1
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 4.4e-103 378.6 280 79.3
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 4.4e-103 378.6 280 79.3
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 4.4e-103 378.6 299 74.6
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 5.7e-103 378.3 304 75.7
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 5.7e-103 378.3 293 77.1
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 5.7e-103 378.3 304 74.7
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 7.4e-103 377.9 302 75.8
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 9.7e-103 377.5 302 76.5
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 9.7e-103 377.5 304 76.3
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 1.3e-102 377.1 302 73.5
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.3e-102 377.1 304 73.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.3e-102 377.1 299 73.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.7e-102 376.7 282 80.5
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 2.2e-102 376.3 300 76.3
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 2.2e-102 376.3 263 84.0
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 2.8e-102 375.9 295 76.9
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 2.8e-102 375.9 295 76.9
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 2.8e-102 375.9 299 77.3
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 2.8e-102 375.9 302 74.8
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 2.8e-102 375.9 301 75.4
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 3.7e-102 375.6 306 76.5
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 4.8e-102 375.2 302 73.2
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 4.8e-102 375.2 333 70.3
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 6.3e-102 374.8 302 73.8
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 6.3e-102 374.8 259 84.2
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 6.3e-102 374.8 307 75.2
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 8.2e-102 374.4 295 76.3
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 8.2e-102 374.4 297 74.7
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.1e-101 374.0 299 76.9
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.1e-101 374.0 302 74.8
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.4e-101 373.6 307 66.1
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-101 373.2 302 74.2
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 2.4e-101 372.9 293 75.1
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 2.4e-101 372.9 300 74.7
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 3.1e-101 372.5 309 75.7
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 3.1e-101 372.5 257 82.9
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 3.1e-101 372.5 302 73.8
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 3.1e-101 372.5 300 75.0
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 5.3e-101 371.7 306 72.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 5.3e-101 371.7 298 74.8
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 9.1e-101 370.9 301 74.8
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 1.2e-100 370.5 303 75.6
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.0e-100 369.8 300 75.0
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 2.6e-100 369.4 300 73.3
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.6e-100 369.4 301 74.8
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 4.5e-100 368.6 265 82.6
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.5e-100 368.6 299 72.9
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 4.5e-100 368.6 313 73.2
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.7e-100 367.9 304 74.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 7.7e-100 367.9 302 74.2
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 7.7e-100 367.9 309 72.2
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 1.0e-99 367.5 305 74.4
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 1.3e-99 367.1 288 76.0
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.3e-99 367.1 301 74.4
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 1.7e-99 366.7 300 72.7
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 1.7e-99 366.7 300 72.7
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 1.7e-99 366.7 302 73.8
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 2.2e-99 366.3 295 75.6
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 2.2e-99 366.3 304 74.3
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 2.2e-99 366.3 299 74.6
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.8e-99 365.5 304 73.0
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 3.8e-99 365.5 296 75.0
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 5.0e-99 365.2 303 74.3
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 8.5e-99 364.4 302 73.2
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 8.5e-99 364.4 304 72.0
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.4e-98 363.6 294 74.5
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 1.4e-98 363.6 253 81.4
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 1.4e-98 363.6 305 72.1
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.9e-98 363.2 303 74.9
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 3.2e-98 362.5 305 74.8
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 4.2e-98 362.1 300 73.0
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 4.2e-98 362.1 300 72.0
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 5.5e-98 361.7 305 74.4
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 9.4e-98 360.9 301 72.8
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 9.4e-98 360.9 301 72.8
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.6e-97 360.1 305 73.8
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 2.1e-97 359.8 271 77.1
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 2.1e-97 359.8 301 72.4
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.7e-97 359.4 235 87.2
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 2.7e-97 359.4 301 72.4
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 2.7e-97 359.4 301 72.4
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.6e-97 359.0 305 73.8
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 3.6e-97 359.0 356 65.2
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 8.0e-97 357.8 306 71.2
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 1.8e-96 356.7 304 72.4
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 5.2e-96 355.1 302 73.5
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 1.1e-95 354.0 300 71.7
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 1.1e-95 354.0 305 71.5
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 2.0e-95 353.2 306 71.6
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 4.4e-95 352.1 302 72.2
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 6.3e-94 348.2 301 73.8
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 3.1e-93 345.9 227 87.7
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.1e-93 345.9 300 70.3
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 4.1e-93 345.5 236 75.0
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 3.5e-92 342.4 300 72.0
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.7e-91 340.1 303 71.6
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 5.5e-90 335.1 237 83.1
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 6.1e-89 331.6 309 67.0
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 6.7e-88 328.2 308 67.5
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.3e-86 323.9 249 73.1
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 3.7e-86 322.4 207 91.3
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.7e-86 322.4 309 67.3
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.6e-81 307.0 244 70.9
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 6.1e-81 305.1 311 66.6
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.4e-80 303.9 207 84.5
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.8e-80 303.5 299 56.9
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 8.3e-78 294.7 335 60.3
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 8.3e-78 294.7 302 58.9
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 9.1e-77 291.2 219 80.8
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 7.7e-76 288.1 196 85.7
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 8.6e-75 284.6 248 77.0
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.2e-73 280.8 248 60.9
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.6e-73 280.4 261 71.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 4.7e-73 278.9 251 65.3
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 6.1e-73 278.5 231 62.8
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 1.3e-70 270.8 234 58.1
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 7.0e-69 265.0 238 74.4
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 6.4e-54 215.3 252 47.2
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.6e-52 209.1 245 51.8
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 3.1e-48 196.4 125 75.2
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 9.9e-47 191.4 166 77.1
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 9.9e-47 191.4 169 75.7
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 8.1e-41 171.8 128 72.7
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.1e-40 171.4 101 80.2
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.8e-40 170.6 101 81.2
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 7.6e-39 165.2 124 69.4
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.8e-33 146.7 125 66.4
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.8e-32 144.1 93 75.3
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.4e-32 143.7 155 56.1
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 2.0e-31 140.6 108 76.9
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 5.6e-26 122.5 92 70.7
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 7.6e-23 112.1 237 35.4
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 2.4e-21 107.1 156 55.1
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.8e-17 93.6 107 65.4
TPR.G23383 Trifolium pratense HOM05D003424 ORTHO05D004025 1.1e-16 91.7 122 50.0
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 2.4e-16 90.5 83 80.7
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 5.3e-16 89.4 157 52.2
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.0e-07 60.8 45 62.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.2e-06 57.4 98 35.7
CAN.G835.4 Capsicum annuum HOM05D000091 ORTHO05D003679 2.9e-06 57.0 36 83.3


User provided reference genes

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