Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
ClCG00G000150 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.0e-134 482.6 280 100.0
ClCG10G003400 Citrullus lanatus HOM05D003763 ORTHO05D004315 2.0e-134 482.6 280 100.0
CsaV3_3G003430 Cucumis sativus L. HOM05D003763 ORTHO05D004315 4.0e-119 431.8 320 82.5
MELO3C014009.2 Cucumis melo HOM05D003763 ORTHO05D004315 1.4e-116 423.3 325 80.3
Sed0026462 Sechium edule HOM05D003763 ORTHO05D004315 6.0e-115 417.9 324 79.3
ClCG00G002290 Citrullus lanatus HOM05D003763 ORTHO05D004315 3.9e-114 415.2 299 85.6
Sed0016409 Sechium edule HOM05D003763 ORTHO05D004315 1.0e-106 390.6 326 76.1
Dinv37708 Davidia involucrata HOM05D003763 ORTHO05D004315 2.5e-92 342.8 326 68.1
Manes.01G070000 Manihot esculenta HOM05D003763 ORTHO05D004315 1.6e-91 340.1 327 67.0
Oeu056817.1 Olea europaea HOM05D003763 ORTHO05D004315 1.0e-90 337.4 332 63.6
Cpa.g.sc29.40 Carica papaya HOM05D003763 ORTHO05D004315 1.4e-90 337.0 323 65.6
Potri.001G113000 Populus trichocarpa HOM05D003763 ORTHO05D004315 3.0e-90 335.9 327 65.7
Thecc.03G267900 Theobroma cacao HOM05D003763 ORTHO05D004315 6.7e-90 334.7 323 67.5
Gohir.D08G195200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 2.5e-89 332.8 324 67.0
CAN.G1394.10 Capsicum annuum HOM05D003763 ORTHO05D004315 3.3e-89 332.4 323 63.2
Duzib084G0949 Durio zibethinus HOM05D003763 ORTHO05D004315 4.3e-89 332.0 323 67.5
Duzib205G0169 Durio zibethinus HOM05D003763 ORTHO05D004315 1.3e-88 330.5 323 65.9
Lj4g0003870 Lotus japonicus HOM05D003763 ORTHO05D004315 1.3e-88 330.5 325 65.2
Cfa012069 Carpinus fangiana HOM05D003763 ORTHO05D004315 1.7e-88 330.1 327 65.1
Ciclev10021127m.g Citrus clementina HOM05D003763 ORTHO05D004315 2.2e-88 329.7 328 64.6
Atru.chr9.1500 Acer truncatum HOM05D003763 ORTHO05D004315 2.8e-88 329.3 324 65.7
COL.COLO4_23800 Corchorus olitorius HOM05D003763 ORTHO05D004315 2.8e-88 329.3 323 66.3
Hma1.2p1_0138F.1_g062780 Hydrangea macrophylla HOM05D003763 ORTHO05D004315 4.8e-88 328.6 336 63.4
CSS0018103 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.2e-88 327.8 330 63.9
Sopen08g003700 Solanum pennellii HOM05D003763 ORTHO05D004315 1.1e-87 327.4 323 62.8
PGSC0003DMG400012494 Solanum tuberosum HOM05D003763 ORTHO05D004315 1.1e-87 327.4 323 63.8
Nitab4.5_0010547g0050 Nicotiana tabacum HOM05D003763 ORTHO05D004315 2.4e-87 326.2 331 63.7
TWI60G0957 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 2.4e-87 326.2 327 64.5
Migut.E01271 Erythranthe guttata HOM05D003763 ORTHO05D004315 4.1e-87 325.5 324 63.3
Migut.E01022 Erythranthe guttata HOM05D003763 ORTHO05D004315 5.3e-87 325.1 324 63.3
Sabra03G0083200 Salix brachista HOM05D003763 ORTHO05D004315 5.3e-87 325.1 327 64.8
TWI81G0532 Tripterygium wilfordii HOM05D003763 ORTHO05D004315 5.3e-87 325.1 327 64.2
Gorai.004G206000 Gossypium raimondii HOM05D003763 ORTHO05D004315 6.9e-87 324.7 328 64.9
arahy.Tifrunner.gnm1.ann1.QN4KPS Arachis hypogaea HOM05D003763 ORTHO05D004315 9.1e-87 324.3 334 65.0
Sopen08g028400 Solanum pennellii HOM05D003763 ORTHO05D004315 9.1e-87 324.3 323 63.2
GSVIVG01019890001 Vitis vinifera HOM05D003763 ORTHO05D004315 1.2e-86 323.9 328 63.4
Lsat_1_v5_gn_6_78800 Lactuca sativa HOM05D003763 ORTHO05D004315 1.5e-86 323.6 327 62.1
vmacro14015 Vaccinium macrocarpon HOM05D003763 ORTHO05D004315 2.0e-86 323.2 342 61.7
PGSC0003DMG400022731 Solanum tuberosum HOM05D003763 ORTHO05D004315 2.6e-86 322.8 323 62.5
Lalb_Chr05g0214701 Lupinus albus HOM05D003763 ORTHO05D004315 3.4e-86 322.4 317 65.6
Ca_20236_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 7.7e-86 321.2 315 66.7
Potri.003G119200 Populus trichocarpa HOM05D003763 ORTHO05D004315 7.7e-86 321.2 328 64.0
Sc22g0000420 Simmondsia chinensis HOM05D003763 ORTHO05D004315 1.7e-85 320.1 326 62.0
CAN.G981.62 Capsicum annuum HOM05D003763 ORTHO05D004315 2.2e-85 319.7 326 62.6
Prupe.5G086900 Prunus persica HOM05D003763 ORTHO05D004315 2.2e-85 319.7 324 63.9
CiPaw.12G101000 Carya illinoinensis HOM05D003763 ORTHO05D004315 2.9e-85 319.3 330 64.8
Oeu021144.1 Olea europaea HOM05D003763 ORTHO05D004315 2.9e-85 319.3 283 67.5
Gorai.008G242200 Gossypium raimondii HOM05D003763 ORTHO05D004315 3.8e-85 318.9 323 65.3
VMungo1215G1438 Vigna mungo HOM05D003763 ORTHO05D004315 5.0e-85 318.5 325 63.4
Glyma.05G051300 Glycine max HOM05D003763 ORTHO05D004315 6.5e-85 318.2 326 63.8
CSS0001568 Camellia sinensis var. sinensis HOM05D003763 ORTHO05D004315 8.5e-85 317.8 323 63.8
Glyma.17G133200 Glycine max HOM05D003763 ORTHO05D004315 8.5e-85 317.8 290 68.6
CANSAT21G0452 Cannabis sativa HOM05D003763 ORTHO05D004315 1.1e-84 317.4 324 64.2
Phvul.003G213900 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 1.1e-84 317.4 328 64.3
ECA240G4155 Erigeron canadensis HOM05D003763 ORTHO05D004315 1.4e-84 317.0 328 61.9
Eucgr.D01944 Eucalyptus grandis HOM05D003763 ORTHO05D004315 1.4e-84 317.0 306 67.0
Gohir.D12G226200 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.4e-84 317.0 323 65.0
SalBow6G0972 Salvia bowleyana HOM05D003763 ORTHO05D004315 1.9e-84 316.6 326 62.9
MD04G1071000 Malus domestica HOM05D003763 ORTHO05D004315 2.5e-84 316.2 327 64.2
MSTRG.13805 Avicennia marina HOM05D003763 ORTHO05D004315 4.2e-84 315.5 328 61.6
THA.LOC104814132 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 4.2e-84 315.5 325 63.1
VMungo1215G3348 Vigna mungo HOM05D003763 ORTHO05D004315 4.2e-84 315.5 357 59.7
TAR629G0773 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.2e-84 314.7 331 63.4
BcaC01g04611 Brassica carinata HOM05D003763 ORTHO05D004315 1.2e-83 313.9 304 65.1
C03p35720 Brassica napus HOM05D003763 ORTHO05D004315 1.2e-83 313.9 304 65.1
CDE04G2291 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 1.2e-83 313.9 281 68.0
Lsat_1_v5_gn_6_8180 Lactuca sativa HOM05D003763 ORTHO05D004315 1.2e-83 313.9 330 60.3
Ah.12g057870 Amaranthus hybridus HOM05D003763 ORTHO05D004315 1.6e-83 313.5 332 63.3
BolC3t15881H Brassica oleracea HOM05D003763 ORTHO05D004315 2.7e-83 312.8 326 63.5
FAN04G0845 Fragaria x ananassa HOM05D003763 ORTHO05D004315 3.6e-83 312.4 325 62.8
Glyma.01G214300 Glycine max HOM05D003763 ORTHO05D004315 4.7e-83 312.0 324 63.3
Peaxi162Scf00102g01354 Petunia axillaris HOM05D003763 ORTHO05D004315 7.9e-83 311.2 326 61.7
SalBow1G0491 Salvia bowleyana HOM05D003763 ORTHO05D004315 7.9e-83 311.2 312 64.1
TAR622G0836 Trochodendron aralioides HOM05D003763 ORTHO05D004315 7.9e-83 311.2 317 62.8
A03p29510 Brassica napus HOM05D003763 ORTHO05D004315 1.0e-82 310.8 319 63.6
BraA03t12145Z Brassica rapa HOM05D003763 ORTHO05D004315 1.0e-82 310.8 319 63.6
HanXRQChr13g0414021 Helianthus annuus HOM05D003763 ORTHO05D004315 1.8e-82 310.1 327 62.1
BcaB01g02662 Brassica carinata HOM05D003763 ORTHO05D004315 3.0e-82 309.3 319 63.0
FvH4_5g01180 Fragaria vesca HOM05D003763 ORTHO05D004315 3.0e-82 309.3 326 62.3
Medtr4g102440 Medicago truncatula HOM05D003763 ORTHO05D004315 3.9e-82 308.9 282 69.1
Phvul.002G152800 Phaseolus vulgaris HOM05D003763 ORTHO05D004315 5.1e-82 308.5 330 63.3
TPR.G37646 Trifolium pratense HOM05D003763 ORTHO05D004315 5.1e-82 308.5 337 61.1
FAN13G2490 Fragaria x ananassa HOM05D003763 ORTHO05D004315 6.7e-82 308.1 326 62.0
FAN18G3786 Fragaria x ananassa HOM05D003763 ORTHO05D004315 8.8e-82 307.8 328 62.5
EL10Ac5g12684 Beta vulgaris HOM05D003763 ORTHO05D004315 1.5e-81 307.0 333 63.1
Hund14702 Selenicereus undatus HOM05D003763 ORTHO05D004315 2.6e-81 306.2 329 63.2
arahy.Tifrunner.gnm1.ann1.RZ3A35 Arachis hypogaea HOM05D003763 ORTHO05D004315 3.3e-81 305.8 290 67.6
Rhsim07G0096500 Rhododendron simsii HOM05D003763 ORTHO05D004315 3.3e-81 305.8 380 55.8
Nn1g01278 Nelumbo nucifera HOM05D003763 ORTHO05D004315 4.4e-81 305.4 278 68.3
THA.LOC104806356 Tarenaya hassleriana HOM05D003763 ORTHO05D004315 4.4e-81 305.4 329 62.0
Migut.A00895 Erythranthe guttata HOM05D003763 ORTHO05D004315 7.4e-81 304.7 318 60.7
FAN08G0919 Fragaria x ananassa HOM05D003763 ORTHO05D004315 7.4e-81 304.7 327 62.1
A03p53850 Brassica napus HOM05D003763 ORTHO05D004315 1.3e-80 303.9 324 60.5
Thhalv10025739m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.3e-80 303.9 325 61.8
Medtr5g011220 Medicago truncatula HOM05D003763 ORTHO05D004315 1.3e-80 303.9 327 62.1
AT4G22890 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 2.2e-80 303.1 328 61.0
DCAR_000890 Daucus carota HOM05D003763 ORTHO05D004315 2.2e-80 303.1 321 61.4
Sp6g05550 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.2e-80 303.1 324 61.4
Sp7g20960 Schrenkiella parvula HOM05D003763 ORTHO05D004315 2.8e-80 302.8 328 60.4
Aqoxy7G00504 Aquilegia oxysepala HOM05D003763 ORTHO05D004315 8.2e-80 301.2 328 59.8
C07p52250 Brassica napus HOM05D003763 ORTHO05D004315 8.2e-80 301.2 324 59.9
BolC7t45719H Brassica oleracea HOM05D003763 ORTHO05D004315 8.2e-80 301.2 324 59.9
Aa31LG9G10510 Aethionema arabicum HOM05D003763 ORTHO05D004315 1.1e-79 300.8 328 60.7
arahy.Tifrunner.gnm1.ann1.HFU20B Arachis hypogaea HOM05D003763 ORTHO05D004315 1.1e-79 300.8 328 62.2
AUR62017330 Chenopodium quinoa HOM05D003763 ORTHO05D004315 1.1e-79 300.8 329 62.0
Actinidia27416 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.4e-79 300.4 259 70.7
CARHR254330 Cardamine hirsuta HOM05D003763 ORTHO05D004315 1.8e-79 300.1 325 61.2
Thhalv10028695m.g Eutrema salsugineum HOM05D003763 ORTHO05D004315 1.8e-79 300.1 319 62.1
RcHm_v2.0_Chr7g0199911 Rosa chinensis HOM05D003763 ORTHO05D004315 1.8e-79 300.1 326 62.6
Psat4g068320 Pisum sativum HOM05D003763 ORTHO05D004315 2.4e-79 299.7 321 60.1
AT4G11960 Arabidopsis thaliana HOM05D003763 ORTHO05D004315 3.1e-79 299.3 312 62.2
Carub.0007s1839 Capsella rubella HOM05D003763 ORTHO05D004315 3.1e-79 299.3 326 60.1
AUR62010559 Chenopodium quinoa HOM05D003763 ORTHO05D004315 3.1e-79 299.3 329 61.7
Carub.0006s3106 Capsella rubella HOM05D003763 ORTHO05D004315 4.1e-79 298.9 320 61.2
unitig_52.g17229 Utricularia gibba HOM05D003763 ORTHO05D004315 4.1e-79 298.9 311 62.1
Cc08_g13730 Coffea canephora HOM05D003763 ORTHO05D004315 5.3e-79 298.5 324 59.9
AL6G46730 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 1.2e-78 297.4 318 61.0
BcaNung01664 Brassica carinata HOM05D003763 ORTHO05D004315 3.5e-78 295.8 277 65.3
PSO478G4698 Papaver somniferum HOM05D003763 ORTHO05D004315 3.5e-78 295.8 323 61.0
Aa31LG6G4960 Aethionema arabicum HOM05D003763 ORTHO05D004315 7.7e-78 294.7 295 62.4
Ca_24565_v3 Cicer arietinum L. HOM05D003763 ORTHO05D004315 7.7e-78 294.7 326 61.0
PSO782G5713 Papaver somniferum HOM05D003763 ORTHO05D004315 2.2e-77 293.1 324 60.2
A01p14110 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-77 292.4 322 59.9
BraA01t01359Z Brassica rapa HOM05D003763 ORTHO05D004315 3.8e-77 292.4 322 59.9
BcaC09g51065 Brassica carinata HOM05D003763 ORTHO05D004315 8.5e-77 291.2 322 59.6
C01p17370 Brassica napus HOM05D003763 ORTHO05D004315 1.1e-76 290.8 322 59.6
BolC1t01675H Brassica oleracea HOM05D003763 ORTHO05D004315 1.1e-76 290.8 322 59.6
PGR031G0886 Punica granatum HOM05D003763 ORTHO05D004315 7.2e-76 288.1 325 62.2
BcaNung01019 Brassica carinata HOM05D003763 ORTHO05D004315 9.4e-76 287.7 321 59.2
Lj2g0000892 Lotus japonicus HOM05D003763 ORTHO05D004315 9.4e-76 287.7 325 60.9
Zm00001eb064990 Zea mays HOM05D003763 ORTHO05D004315 8.0e-75 284.6 331 58.6
Lj8C243T4 Lonicera japonica HOM05D003763 ORTHO05D004315 1.0e-74 284.3 261 68.6
Solyc08g007770.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 2.3e-74 283.1 297 61.6
CARHR229930 Cardamine hirsuta HOM05D003763 ORTHO05D004315 3.9e-74 282.3 324 57.7
Nitab4.5_0001200g0070 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.8e-74 281.2 256 59.4
Solyc08g080050.4 Solanum lycopersicum HOM05D003763 ORTHO05D004315 1.5e-73 280.4 297 61.6
Lj2A202G55 Lonicera japonica HOM05D003763 ORTHO05D004315 1.3e-72 277.3 273 60.4
Nitab4.5_0002886g0120 Nicotiana tabacum HOM05D003763 ORTHO05D004315 1.3e-72 277.3 307 53.1
arahy.Tifrunner.gnm1.ann1.N69HTX Arachis hypogaea HOM05D003763 ORTHO05D004315 2.2e-72 276.6 305 63.6
HanXRQChr03g0084111 Helianthus annuus HOM05D003763 ORTHO05D004315 2.8e-72 276.2 310 60.0
Os03g0857400 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 4.8e-72 275.4 329 58.4
BraA03t14454Z Brassica rapa HOM05D003763 ORTHO05D004315 1.8e-71 273.5 300 60.7
Peaxi162Scf00620g00056 Petunia axillaris HOM05D003763 ORTHO05D004315 4.5e-70 268.9 323 58.8
ATR0661G459 Amborella trichopoda HOM05D003763 ORTHO05D004315 1.1e-68 264.2 328 56.1
Gohir.A08G176900 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.2e-68 261.5 231 72.7
Actinidia14012 Actinidia chinensis HOM05D003763 ORTHO05D004315 2.0e-65 253.4 227 70.9
Nitab4.5_0003274g0090 Nicotiana tabacum HOM05D003763 ORTHO05D004315 8.3e-64 248.1 323 46.4
Haze_08989 Corylus avellana HOM05D003763 ORTHO05D004315 1.1e-63 247.7 304 58.9
AL7G30630 Arabidopsis lyrata HOM05D003763 ORTHO05D004315 7.7e-62 241.5 231 66.2
Mapoly0048s0082 Marchantia polymorpha HOM05D003763 ORTHO05D004315 1.5e-60 237.3 262 55.7
SEGI_18243 Sequoiadendron giganteum HOM05D003763 ORTHO05D004315 7.5e-57 224.9 320 47.5
AagrBONN_evm.TU.Sc2ySwM_362.2619 Anthoceros agrestis HOM05D003763 ORTHO05D004315 1.0e-53 214.5 251 46.6
Pp3c10_15390 Physcomitrium patens HOM05D003763 ORTHO05D004315 2.9e-53 213.0 271 50.6
Dinv39038 Davidia involucrata HOM05D003763 ORTHO05D004315 7.2e-52 208.4 196 75.5
SMO356G0021 Selaginella moellendorffii HOM05D003763 ORTHO05D004315 7.2e-52 208.4 250 46.0
Psat6g136800 Pisum sativum HOM05D003763 ORTHO05D004315 5.2e-50 202.2 196 68.4
unitig_699.g19760 Utricularia gibba HOM05D003763 ORTHO05D004315 9.8e-49 198.0 219 63.0
Psat2g180880 Pisum sativum HOM05D003763 ORTHO05D004315 1.1e-47 194.5 261 58.6
MSTRG.12034 Avicennia marina HOM05D003763 ORTHO05D004315 3.5e-46 189.5 165 77.0
CiPaw.11G143200 Carya illinoinensis HOM05D003763 ORTHO05D004315 7.8e-46 188.3 224 63.8
Actinidia05236 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.0e-45 188.0 248 45.6
CDE07G1747 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 5.0e-45 185.7 146 83.6
Gohir.A12G223566 Gossypium hirsutum HOM05D003763 ORTHO05D004315 7.5e-41 171.8 128 72.7
Cre07.g340200 Chlamydomonas reinhardtii HOM05D003763 ORTHO05D004315 4.9e-40 169.1 267 42.3
Actinidia02868 Actinidia chinensis HOM05D003763 ORTHO05D004315 1.9e-36 157.1 218 45.0
CDE07G1293 Ceratophyllum demersum HOM05D003763 ORTHO05D004315 9.5e-36 154.8 94 74.5
Gohir.A12G223632 Gossypium hirsutum HOM05D003763 ORTHO05D004315 1.4e-34 151.0 93 75.3
HPP92_014954 Vanilla planifolia HOM05D003763 ORTHO05D004315 2.6e-33 146.7 125 66.4
Glyma.12G170600 Glycine max HOM05D003763 ORTHO05D004315 9.8e-33 144.8 143 53.8
CBR_g23735 Chara braunii HOM05D003763 ORTHO05D004315 1.7e-32 144.1 236 36.9
Lsat_1_v5_gn_8_1701 Lactuca sativa HOM05D003763 ORTHO05D004315 1.7e-32 144.1 93 75.3
Zm00001eb305640 Zea mays HOM05D003763 ORTHO05D004315 2.2e-32 143.7 155 56.1
Zm00001eb065010 Zea mays HOM05D003763 ORTHO05D004315 1.4e-31 141.0 176 46.0
Zm00001eb065020 Zea mays HOM05D003763 ORTHO05D004315 5.2e-26 122.5 92 70.7
BcaC02g09855 Brassica carinata HOM05D003763 ORTHO05D004315 1.7e-21 107.5 156 55.1
TPR.G14577 Trifolium pratense HOM05D003763 ORTHO05D004315 6.2e-19 99.0 112 58.9
C04p35880 Brassica napus HOM05D003763 ORTHO05D004315 3.8e-16 89.7 157 52.2
Os08g0526300 Oryza sativa ssp. japonica HOM05D003763 ORTHO05D004315 3.2e-15 86.7 77 81.8
Pp3c3_19870 Physcomitrium patens HOM05D003763 ORTHO05D004315 5.4e-15 85.9 98 65.3
arahy.Tifrunner.gnm1.ann1.AG3Z3P Arachis hypogaea HOM05D003763 ORTHO05D004315 2.1e-11 73.9 93 45.2
MCO02G269 Micromonas commoda HOM05D066820 ORTHO05D004315 2.1e-06 57.4 98 35.7


User provided reference genes

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