Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.4e-179 632.1 337 100.0
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 5.3e-158 561.2 337 89.0
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 1.4e-155 553.1 337 87.5
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 4.2e-155 551.6 337 87.2
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 5.5e-155 551.2 337 87.8
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.2e-155 550.8 337 86.6
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.2e-154 550.1 337 86.6
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 1.2e-154 550.1 337 86.6
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.6e-154 549.7 338 87.6
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 4.6e-154 548.1 337 87.5
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.0e-153 547.0 339 87.6
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 1.0e-153 547.0 337 84.9
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 1.8e-153 546.2 337 87.2
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 86.6
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.1e-153 544.7 337 86.1
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 1.1e-152 543.5 338 85.8
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 1.5e-152 543.1 337 85.8
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 1.5e-152 543.1 337 85.8
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 4.3e-152 541.6 337 85.5
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 7.4e-152 540.8 338 87.0
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 85.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 9.7e-152 540.4 337 86.4
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 2.2e-151 539.3 337 84.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 2.8e-151 538.9 337 85.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 2.8e-151 538.9 337 85.5
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 4.8e-151 538.1 337 86.6
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 4.8e-151 538.1 339 85.8
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 8.2e-151 537.3 337 85.2
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 1.4e-150 536.6 337 85.8
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 2.4e-150 535.8 349 83.7
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 3.1e-150 535.4 337 84.9
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 4.1e-150 535.0 336 85.1
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 4.1e-150 535.0 336 85.1
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 2.0e-149 532.7 337 84.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 2.6e-149 532.3 338 85.5
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 4.5e-149 531.6 337 83.7
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 4.5e-149 531.6 341 84.5
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 5.9e-149 531.2 337 84.3
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 7.7e-149 530.8 337 84.6
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 1.0e-148 530.4 354 83.1
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 1.3e-148 530.0 337 84.0
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 85.8
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.9e-148 528.9 338 82.5
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 5.0e-148 528.1 338 82.8
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 6.5e-148 527.7 337 84.9
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 84.0
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 1.1e-147 526.9 338 84.0
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 2.5e-147 525.8 340 84.4
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 5.5e-147 524.6 338 82.2
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 3.6e-146 521.9 338 82.8
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 1.4e-145 520.0 337 82.2
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.4e-145 520.0 340 83.2
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 2.3e-145 519.2 337 82.2
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.0e-145 518.8 339 83.5
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 3.9e-145 518.5 338 82.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 5.1e-145 518.1 340 83.5
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 6.7e-145 517.7 337 83.7
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 1.5e-144 516.5 337 81.0
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 1.5e-144 516.5 359 79.9
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 82.5
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 4.4e-144 515.0 337 81.6
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 5.7e-144 514.6 338 81.7
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 7.4e-144 514.2 337 81.9
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 7.4e-144 514.2 337 81.9
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 9.7e-144 513.8 337 81.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.7e-143 513.1 337 81.6
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 1.7e-143 513.1 337 81.6
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 2.8e-143 512.3 355 79.4
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 2.8e-143 512.3 355 79.4
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 3.7e-143 511.9 337 82.2
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 8.2e-143 510.8 321 85.4
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 8.2e-143 510.8 372 76.3
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 1.8e-142 509.6 365 77.3
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 2.4e-142 509.2 338 82.0
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 4.1e-142 508.4 339 81.7
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 4.5e-141 505.0 339 81.4
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 5.9e-141 504.6 337 81.3
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 80.5
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 7.7e-141 504.2 338 80.5
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 1.7e-140 503.1 330 83.6
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 1.7e-140 503.1 340 78.2
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 6.5e-140 501.1 337 81.3
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 6.5e-140 501.1 321 84.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 1.1e-139 500.4 337 80.7
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 4.2e-139 498.4 345 78.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 1.2e-138 496.9 321 83.8
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 2.1e-138 496.1 347 78.4
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.1e-138 496.1 347 78.4
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 3.6e-138 495.4 338 80.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 1.0e-137 493.8 330 80.9
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 1.8e-137 493.0 337 80.1
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.3e-137 492.7 354 77.1
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 1.1e-136 490.3 377 73.2
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.0e-136 489.6 331 80.4
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 2.8e-135 485.7 337 77.4
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.8e-134 483.0 338 78.4
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 81.8
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.4e-134 482.6 325 81.8
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 3.5e-133 478.8 349 76.8
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 7.7e-133 477.6 337 78.6
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 5.0e-132 474.9 367 73.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 8.5e-132 474.2 337 74.8
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-130 468.8 365 72.9
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-130 468.8 365 72.9
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 3.7e-127 458.8 337 76.6
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 6.3e-127 458.0 305 83.0
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.0e-124 450.7 338 75.1
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 3.4e-120 435.6 352 71.3
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 2.8e-119 432.6 284 82.4
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 1.6e-117 426.8 334 74.0
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 3.3e-115 419.1 516 52.3
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 3.3e-115 419.1 274 85.4
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 2.9e-111 406.0 228 86.8
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 5.4e-110 401.7 339 71.4
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 5.6e-107 391.7 321 72.3
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 4.1e-102 375.6 255 83.9
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 7.0e-102 374.8 320 70.6
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 2.0e-96 356.7 279 71.7
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 9.8e-96 354.4 337 63.5
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 1.7e-92 343.6 337 62.0
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 1.2e-85 320.9 382 46.9
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-81 307.4 147 98.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.2e-81 305.4 330 50.3
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-67 261.2 180 75.0
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 1.7e-63 247.3 211 71.6
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 5.1e-60 235.7 330 43.9
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 1.2e-53 214.5 116 87.1
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 1.8e-52 210.7 165 75.2
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 2.5e-43 180.3 82 100.0
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 5.3e-41 172.6 91 94.5
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.3e-39 167.9 100 91.0
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.0e-36 158.3 90 94.4
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 3.8e-23 113.2 64 93.8
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 5.0e-23 112.8 55 98.2
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.8e-17 94.4 332 26.2
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.5e-16 90.1 200 28.5
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 1.1e-14 85.1 64 65.6
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 4.7e-13 79.7 39 92.3
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 4.0e-12 76.6 83 68.7
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.8e-12 75.5 54 68.5
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 8.8e-12 75.5 41 90.2
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 2.8e-10 70.5 45 75.6
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 3.7e-10 70.1 30 96.7


User provided reference genes

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