Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10024928m.g Citrus clementina HOM05D005942 ORTHO05D007209 0.0e+00 1515.4 787 100.0
Atru.chr1.4156 Acer truncatum HOM05D005942 ORTHO05D007209 1.5e-288 996.1 763 69.9
Potri.003G073000 Populus trichocarpa HOM05D005942 ORTHO05D007209 6.1e-282 974.2 785 65.4
QL05p001132 Quercus lobata HOM05D005942 ORTHO05D007209 6.1e-274 947.6 753 65.5
QL05p000862 Quercus lobata HOM05D005942 ORTHO05D007209 5.2e-273 944.5 753 65.2
Sabra03G0043700 Salix brachista HOM05D005942 ORTHO05D007209 4.7e-266 921.4 815 61.0
CiPaw.02G130800 Carya illinoinensis HOM05D005942 ORTHO05D007209 5.8e-264 914.4 787 61.0
TAR624G0006 Trochodendron aralioides HOM05D005942 ORTHO05D007209 1.9e-259 899.4 757 62.9
GSVIVG01016664001 Vitis vinifera HOM05D005942 ORTHO05D007209 7.5e-256 887.5 763 62.4
Thecc.06G130500 Theobroma cacao HOM05D005942 ORTHO05D007209 8.3e-255 884.0 746 63.1
TWI14G0802 Tripterygium wilfordii HOM05D005942 ORTHO05D007209 1.1e-254 883.6 787 61.2
Dinv37817 Davidia involucrata HOM05D005942 ORTHO05D007209 3.2e-254 882.1 708 65.5
Haze_16138 Corylus avellana HOM05D005942 ORTHO05D007209 1.0e-252 877.1 924 53.8
Dinv20380 Davidia involucrata HOM05D005942 ORTHO05D007209 3.3e-251 872.1 743 62.7
CSS0026354 Camellia sinensis var. sinensis HOM05D005942 ORTHO05D007209 4.7e-250 868.2 695 64.2
PGR102G3180 Punica granatum HOM05D005942 ORTHO05D007209 2.9e-247 859.0 738 60.8
Prupe.3G030900 Prunus persica HOM05D005942 ORTHO05D007209 4.1e-246 855.1 785 58.6
Rhsim08G0245000 Rhododendron simsii HOM05D005942 ORTHO05D007209 2.7e-245 852.4 754 59.8
CsaV3_7G033920 Cucumis sativus L. HOM05D005942 ORTHO05D007209 7.8e-245 850.9 753 58.4
Hma1.2p1_0090F.1_g045800 Hydrangea macrophylla HOM05D005942 ORTHO05D007209 1.0e-244 850.5 748 59.6
THA.LOC104813965 Tarenaya hassleriana HOM05D005942 ORTHO05D007209 8.1e-242 840.9 786 58.1
Duzib192G0321 Durio zibethinus HOM05D005942 ORTHO05D007209 5.2e-241 838.2 737 60.5
Gohir.D05G144100 Gossypium hirsutum HOM05D005942 ORTHO05D007209 2.0e-240 836.3 740 59.9
Gorai.009G148000 Gossypium raimondii HOM05D005942 ORTHO05D007209 2.0e-240 836.3 744 59.8
COL.COLO4_30871 Corchorus olitorius HOM05D005942 ORTHO05D007209 4.4e-240 835.1 705 61.6
Gohir.A05G141800 Gossypium hirsutum HOM05D005942 ORTHO05D007209 9.9e-240 833.9 736 59.9
CANSAT56G3801 Cannabis sativa HOM05D005942 ORTHO05D007209 3.8e-239 832.0 683 62.5
ClCG09G001410 Citrullus lanatus HOM05D005942 ORTHO05D007209 3.5e-237 825.5 752 57.3
Eucgr.J02595 Eucalyptus grandis HOM05D005942 ORTHO05D007209 1.1e-235 820.5 786 57.1
MELO3C024305.2 Cucumis melo HOM05D005942 ORTHO05D007209 4.3e-235 818.5 753 57.6
Nn3g21985 Nelumbo nucifera HOM05D005942 ORTHO05D007209 1.3e-234 817.0 788 57.1
Lj9C538T8 Lonicera japonica HOM05D005942 ORTHO05D007209 8.1e-234 814.3 801 55.7
FvH4_6g35860 Fragaria vesca HOM05D005942 ORTHO05D007209 1.4e-233 813.5 748 57.8
Manes.04G151100 Manihot esculenta HOM05D005942 ORTHO05D007209 3.4e-232 808.9 786 58.0
RcHm_v2.0_Chr2g0147901 Rosa chinensis HOM05D005942 ORTHO05D007209 2.9e-231 805.8 725 58.9
Cfa003459 Carpinus fangiana HOM05D005942 ORTHO05D007209 4.9e-231 805.1 1130 44.0
FAN09G3780 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.9e-230 803.1 748 57.4
Sed0028190 Sechium edule HOM05D005942 ORTHO05D007209 4.2e-230 802.0 728 58.5
Aa31LG4G2680 Aethionema arabicum HOM05D005942 ORTHO05D007209 3.5e-229 798.9 782 56.3
FAN14G4637 Fragaria x ananassa HOM05D005942 ORTHO05D007209 7.9e-229 797.7 748 56.8
FAN02G3526 Fragaria x ananassa HOM05D005942 ORTHO05D007209 1.3e-228 797.0 772 56.2
ECA234G0243 Erigeron canadensis HOM05D005942 ORTHO05D007209 1.1e-227 793.9 748 54.8
AL2G32000 Arabidopsis lyrata HOM05D005942 ORTHO05D007209 7.4e-227 791.2 774 55.6
AT1G72320 Arabidopsis thaliana HOM05D005942 ORTHO05D007209 2.1e-226 789.6 774 55.7
MSTRG.10908 Avicennia marina HOM05D005942 ORTHO05D007209 3.7e-226 788.9 797 55.2
MD09G1172500 Malus domestica HOM05D005942 ORTHO05D007209 2.4e-225 786.2 761 55.6
Thhalv10018182m.g Eutrema salsugineum HOM05D005942 ORTHO05D007209 3.4e-224 782.3 775 55.4
Lsat_1_v5_gn_5_137681 Lactuca sativa HOM05D005942 ORTHO05D007209 2.4e-222 776.2 740 54.3
DCAR_007660 Daucus carota HOM05D005942 ORTHO05D007209 9.3e-222 774.2 730 56.3
PGSC0003DMG400009149 Solanum tuberosum HOM05D005942 ORTHO05D007209 1.2e-221 773.9 731 56.5
Peaxi162Scf00038g02336 Petunia axillaris HOM05D005942 ORTHO05D007209 2.1e-221 773.1 743 55.7
Aqoxy7G00926 Aquilegia oxysepala HOM05D005942 ORTHO05D007209 3.5e-221 772.3 688 59.2
Lalb_Chr15g0076691 Lupinus albus HOM05D005942 ORTHO05D007209 7.9e-221 771.2 728 55.6
Sp5g27400 Schrenkiella parvula HOM05D005942 ORTHO05D007209 7.4e-219 764.6 750 55.2
Carub.0002s1918 Capsella rubella HOM05D005942 ORTHO05D007209 1.3e-218 763.8 738 55.1
CAN.G790.55 Capsicum annuum HOM05D005942 ORTHO05D007209 2.8e-218 762.7 743 55.2
Solyc03g123640.3 Solanum lycopersicum HOM05D005942 ORTHO05D007209 3.1e-217 759.2 735 55.2
CARHR065220 Cardamine hirsuta HOM05D005942 ORTHO05D007209 9.0e-217 757.7 780 53.8
Glyma.03G263200 Glycine max HOM05D005942 ORTHO05D007209 9.0e-217 757.7 770 54.7
VMungo1309G0067 Vigna mungo HOM05D005942 ORTHO05D007209 1.3e-215 753.8 786 53.3
vmacro18719 Vaccinium macrocarpon HOM05D005942 ORTHO05D007209 2.2e-215 753.1 682 59.4
Cc04_g00670 Coffea canephora HOM05D005942 ORTHO05D007209 3.8e-215 752.3 707 56.7
SalBow7G4809 Salvia bowleyana HOM05D005942 ORTHO05D007209 1.1e-214 750.7 795 52.6
Sopen03g041410 Solanum pennellii HOM05D005942 ORTHO05D007209 3.5e-213 745.7 691 57.3
Lj1g0014309 Lotus japonicus HOM05D005942 ORTHO05D007209 1.9e-211 740.0 700 55.6
MBI13_g01657_MAGBIO Magnolia biondii HOM05D005942 ORTHO05D007209 2.5e-211 739.6 802 51.4
Phvul.009G261600 Phaseolus vulgaris HOM05D005942 ORTHO05D007209 5.7e-211 738.4 785 52.5
Medtr7g117545 Medicago truncatula HOM05D005942 ORTHO05D007209 4.8e-210 735.3 703 56.2
PSO170G5566 Papaver somniferum HOM05D005942 ORTHO05D007209 1.1e-209 734.2 682 58.8
Nitab4.5_0006338g0060 Nicotiana tabacum HOM05D005942 ORTHO05D007209 1.8e-209 733.4 695 56.4
PSO017G1617 Papaver somniferum HOM05D005942 ORTHO05D007209 5.9e-208 728.4 697 57.4
TPR.G28866 Trifolium pratense HOM05D005942 ORTHO05D007209 1.0e-207 727.6 741 54.4
arahy.Tifrunner.gnm1.ann1.SXV5N5 Arachis hypogaea HOM05D005942 ORTHO05D007209 5.0e-207 725.3 658 56.1
Migut.I01134 Erythranthe guttata HOM05D005942 ORTHO05D007209 9.3e-206 721.1 747 53.3
AUR62001402 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.1e-205 718.4 748 51.6
AUR62025613 Chenopodium quinoa HOM05D005942 ORTHO05D007209 6.1e-205 718.4 749 51.7
Hund18636 Selenicereus undatus HOM05D005942 ORTHO05D007209 5.1e-204 715.3 719 52.9
BcaC08g46688 Brassica carinata HOM05D005942 ORTHO05D007209 6.7e-204 714.9 752 52.3
Oeu019509.2 Olea europaea HOM05D005942 ORTHO05D007209 6.7e-204 714.9 607 61.6
A07p38500 Brassica napus HOM05D005942 ORTHO05D007209 1.5e-203 713.8 754 52.0
BolC6t39713H Brassica oleracea HOM05D005942 ORTHO05D007209 5.7e-203 711.8 755 52.2
C06p46680 Brassica napus HOM05D005942 ORTHO05D007209 7.4e-203 711.4 755 52.2
Psat6g168240 Pisum sativum HOM05D005942 ORTHO05D007209 8.2e-202 708.0 701 54.6
BraA07t31410Z Brassica rapa HOM05D005942 ORTHO05D007209 1.1e-201 707.6 775 51.0
SGA_v2.0_scaffold122G33306 Striga asiatica HOM05D005942 ORTHO05D007209 1.6e-197 693.7 722 53.6
BcaB03g14980 Brassica carinata HOM05D005942 ORTHO05D007209 7.9e-197 691.4 752 51.9
HanXRQChr10g0311801 Helianthus annuus HOM05D005942 ORTHO05D007209 2.3e-196 689.9 736 50.0
Ca_07883_v3 Cicer arietinum L. HOM05D005942 ORTHO05D007209 5.1e-196 688.7 633 55.9
Ah.15g094920 Amaranthus hybridus HOM05D005942 ORTHO05D007209 1.3e-194 684.1 669 54.9
EL10Ac7g16496 Beta vulgaris HOM05D005942 ORTHO05D007209 4.8e-194 682.2 705 52.6
FAN05G1996 Fragaria x ananassa HOM05D005942 ORTHO05D007209 5.9e-192 675.2 604 57.6
CDE04G3550 Ceratophyllum demersum HOM05D005942 ORTHO05D007209 2.2e-183 646.7 699 51.6
Sc12g0011030 Simmondsia chinensis HOM05D005942 ORTHO05D007209 1.2e-179 634.4 652 54.3
ATR0099G013 Amborella trichopoda HOM05D005942 ORTHO05D007209 1.7e-178 630.6 688 51.2
Nitab4.5_0001873g0040 Nicotiana tabacum HOM05D005942 ORTHO05D007209 8.8e-172 608.2 683 50.1
HPP92_016652 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.8e-165 586.6 614 50.5
Zm00001eb028000 Zea mays HOM05D005942 ORTHO05D007209 2.9e-159 566.6 783 43.0
Nitab4.5_0007678g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 3.3e-150 536.6 671 47.5
AUR62043501 Chenopodium quinoa HOM05D005942 ORTHO05D007209 1.2e-144 518.1 517 51.8
Actinidia24424 Actinidia chinensis HOM05D005942 ORTHO05D007209 3.5e-128 463.4 389 60.9
unitig_62.g23675 Utricularia gibba HOM05D005942 ORTHO05D007209 4.9e-122 443.0 752 40.0
arahy.Tifrunner.gnm1.ann1.UMP4HF Arachis hypogaea HOM05D005942 ORTHO05D007209 5.6e-118 429.5 420 55.7
Cpa.g.sc25.196 Carica papaya HOM05D005942 ORTHO05D007209 5.8e-107 392.9 277 69.0
Mapoly0020s0016 Marchantia polymorpha HOM05D005942 ORTHO05D007209 1.1e-102 378.6 622 37.9
AagrBONN_evm.TU.Sc2ySwM_369.233 Anthoceros agrestis HOM05D005942 ORTHO05D007209 3.2e-97 360.5 639 36.3
Pp3c10_6430 Physcomitrium patens HOM05D005942 ORTHO05D007209 1.2e-96 358.6 627 36.5
Cpa.g.sc25.195 Carica papaya HOM05D005942 ORTHO05D007209 1.5e-94 351.7 267 65.9
CAN.G635.25 Capsicum annuum HOM05D005942 ORTHO05D007209 1.2e-91 342.0 530 40.4
HPP92_016646 Vanilla planifolia HOM05D005942 ORTHO05D007209 5.3e-84 316.6 348 49.4
Nitab4.5_0001873g0030 Nicotiana tabacum HOM05D005942 ORTHO05D007209 2.2e-82 311.2 656 35.1
SMO118G0133 Selaginella moellendorffii HOM05D005942 ORTHO05D007209 6.7e-79 299.7 574 35.0
HPP92_016647 Vanilla planifolia HOM05D005942 ORTHO05D007209 2.3e-55 221.5 297 43.8
MCO05G275 Micromonas commoda HOM05D005942 ORTHO05D007209 3.1e-52 211.1 585 29.7
Sabra01G0130200 Salix brachista HOM05D005942 ORTHO05D007209 3.7e-45 187.6 682 28.4
Cre16.g649600 Chlamydomonas reinhardtii HOM05D005942 ORTHO05D007209 2.6e-38 164.9 645 24.7
CBR_g4864 Chara braunii HOM05D005942 ORTHO05D007209 6.4e-37 160.2 795 24.3
CAN.G635.26 Capsicum annuum HOM05D005942 ORTHO05D007209 1.2e-32 146.0 179 46.9
Actinidia21839 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.5e-30 139.0 151 51.0
PRCOL_00005763 Prasinoderma coloniale HOM05D005942 ORTHO05D007209 3.4e-30 137.9 501 26.7
Actinidia21840 Actinidia chinensis HOM05D005942 ORTHO05D007209 1.3e-29 136.0 161 50.3
SEGI_33476 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 1.7e-29 135.6 260 36.2
SEGI_14143 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.1e-24 116.7 171 42.1
Glyma.19G262250 Glycine max HOM05D005942 ORTHO05D007209 1.4e-23 115.9 180 45.0
Haze_02542 Corylus avellana HOM05D005942 ORTHO05D007209 4.7e-16 90.9 84 56.0
CBR_g19531 Chara braunii HOM05D005942 ORTHO05D007209 1.5e-14 85.9 106 41.5
BolC2t09032H Brassica oleracea HOM05D005942 ORTHO05D007209 4.4e-14 84.3 89 50.6
SGA_v2.0_scaffold253G45152 Striga asiatica HOM05D005942 ORTHO05D007209 5.4e-12 77.4 110 40.9
C02p29840 Brassica napus HOM05D005942 ORTHO05D007209 9.3e-12 76.6 74 54.1
MBI15_g00935_MAGBIO Magnolia biondii HOM05D001716 ORTHO05D016670 9.3e-12 76.6 189 31.2
SEGI_28404 Sequoiadendron giganteum HOM05D005942 ORTHO05D007209 8.7e-10 70.1 65 50.8
Psat3g111360 Pisum sativum HOM05D001026 ORTHO05D005232 5.8e-06 57.4 49 49.0


User provided reference genes

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