Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10023389m.g Citrus clementina HOM05D005275 ORTHO05D006435 9.1e-33 142.9 68 100.0
Ciclev10022175m.g Citrus clementina HOM05D005275 ORTHO05D006435 2.0e-24 115.2 62 87.1
Ciclev10023889m.g Citrus clementina HOM05D005275 ORTHO05D006435 6.5e-23 110.2 68 75.0
Cfa016214 Carpinus fangiana HOM05D005275 ORTHO05D006435 2.7e-21 104.8 68 70.6
CiPaw.06G045000 Carya illinoinensis HOM05D005275 ORTHO05D006435 3.6e-21 104.4 67 70.1
CSS0019342 Camellia sinensis var. sinensis HOM05D005275 ORTHO05D006435 8.0e-21 103.2 68 70.6
TWI39G0072 Tripterygium wilfordii HOM05D005275 ORTHO05D006435 1.0e-20 102.8 62 72.6
Potri.012G017300 Populus trichocarpa HOM05D005275 ORTHO05D006435 3.0e-20 101.3 62 69.4
THA.LOC104811989 Tarenaya hassleriana HOM05D005275 ORTHO05D006435 3.0e-20 101.3 62 71.0
QL09p007976 Quercus lobata HOM05D005275 ORTHO05D006435 4.0e-20 100.9 67 67.2
Sed0020778 Sechium edule HOM05D005275 ORTHO05D006435 4.0e-20 100.9 68 70.6
Atru.chr1.1611 Acer truncatum HOM05D005275 ORTHO05D006435 5.2e-20 100.5 68 64.7
Nn8g39914 Nelumbo nucifera HOM05D005275 ORTHO05D006435 5.2e-20 100.5 68 64.7
Potri.012G121228 Populus trichocarpa HOM05D005275 ORTHO05D006435 5.2e-20 100.5 62 67.7
Duzib114G0832 Durio zibethinus HOM05D005275 ORTHO05D006435 6.8e-20 100.1 68 66.2
Cpa.g.sc69.87 Carica papaya HOM05D005275 ORTHO05D006435 4.4e-19 97.4 68 60.3
Hma1.2p1_1507F.1_g287690 Hydrangea macrophylla HOM05D005275 ORTHO05D006435 4.4e-19 97.4 59 69.5
GSVIVG01038570001 Vitis vinifera HOM05D005275 ORTHO05D006435 5.7e-19 97.1 68 63.2
HanXRQChr16g0505961 Helianthus annuus HOM05D005275 ORTHO05D006435 7.5e-19 96.7 68 63.2
RcHm_v2.0_Chr1g0381511 Rosa chinensis HOM05D005275 ORTHO05D006435 7.5e-19 96.7 65 64.6
TAR374G1406 Trochodendron aralioides HOM05D005275 ORTHO05D006435 7.5e-19 96.7 68 61.8
Actinidia34231 Actinidia chinensis HOM05D005275 ORTHO05D006435 9.7e-19 96.3 68 61.8
PGR042G0357 Punica granatum HOM05D005275 ORTHO05D006435 9.7e-19 96.3 62 69.4
Sed0013694 Sechium edule HOM05D005275 ORTHO05D006435 9.7e-19 96.3 68 64.7
Cc01_g04130 Coffea canephora HOM05D005275 ORTHO05D006435 1.3e-18 95.9 62 64.5
Sabra12G0015200 Salix brachista HOM05D005275 ORTHO05D007032 1.3e-18 95.9 62 64.5
COL.COLO4_38546 Corchorus olitorius HOM05D005275 ORTHO05D006435 1.7e-18 95.5 59 67.8
Haze_00229 Corylus avellana HOM05D005275 ORTHO05D006435 2.2e-18 95.1 68 67.6
MELO3C019369.2 Cucumis melo HOM05D005275 ORTHO05D006435 2.8e-18 94.7 68 66.2
CsaV3_3G019750 Cucumis sativus L. HOM05D005275 ORTHO05D006435 2.8e-18 94.7 68 66.2
FAN01G0712 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.8e-18 94.7 65 63.1
FAN10G0352 Fragaria x ananassa HOM05D005275 ORTHO05D006435 2.8e-18 94.7 65 63.1
FAN10G2096 Fragaria x ananassa HOM05D000442 ORTHO05D007032 2.8e-18 94.7 65 63.1
Sc02g0003260 Simmondsia chinensis HOM05D005275 ORTHO05D006435 2.8e-18 94.7 62 66.1
Eucgr.H01489 Eucalyptus grandis HOM05D005275 ORTHO05D006435 3.7e-18 94.4 68 61.8
EL10Ac3g05547 Beta vulgaris HOM05D005275 ORTHO05D006435 4.8e-18 94.0 62 62.9
ClCG05G009030 Citrullus lanatus HOM05D005275 ORTHO05D006435 4.8e-18 94.0 68 63.2
Lalb_Chr22g0360521 Lupinus albus HOM05D005275 ORTHO05D006435 6.3e-18 93.6 58 70.7
MBI14_g34252_MAGBIO Magnolia biondii HOM05D005275 ORTHO05D006435 6.3e-18 93.6 62 61.3
Glyma.06G288700 Glycine max HOM05D005275 ORTHO05D006435 1.1e-17 92.8 62 64.5
AUR62014115 Chenopodium quinoa HOM05D005275 ORTHO05D006435 1.4e-17 92.4 62 59.7
HanXRQChr04g0128021 Helianthus annuus HOM05D005275 ORTHO05D006435 1.8e-17 92.0 68 61.8
Glyma.19G085300 Glycine max HOM05D005275 ORTHO05D006435 2.4e-17 91.7 62 62.9
arahy.Tifrunner.gnm1.ann1.T9K8GJ Arachis hypogaea HOM05D005275 ORTHO05D006435 3.1e-17 91.3 68 58.8
Lj8A623T20 Lonicera japonica HOM05D005275 ORTHO05D006435 3.1e-17 91.3 68 61.8
Lj3g0024506 Lotus japonicus HOM05D005275 ORTHO05D006435 3.1e-17 91.3 58 69.0
Glyma.16G061500 Glycine max HOM05D005275 ORTHO05D006435 4.1e-17 90.9 62 61.3
Lsat_1_v5_gn_7_91160 Lactuca sativa HOM05D005275 ORTHO05D006435 5.3e-17 90.5 67 58.2
TPR.G34143 Trifolium pratense HOM05D005275 ORTHO05D006435 5.3e-17 90.5 58 65.5
Manes.01G140200 Manihot esculenta HOM05D005275 ORTHO05D006435 7.0e-17 90.1 68 58.8
Os05g0528900 Oryza sativa ssp. japonica HOM05D005275 ORTHO05D006435 7.0e-17 90.1 68 57.4
Peaxi162Scf00251g01010 Petunia axillaris HOM05D005275 ORTHO05D006435 7.0e-17 90.1 62 66.1
arahy.Tifrunner.gnm1.ann1.AF7P3K Arachis hypogaea HOM05D005275 ORTHO05D006435 9.1e-17 89.7 68 57.4
arahy.Tifrunner.gnm1.ann1.G3VF9V Arachis hypogaea HOM05D005275 ORTHO05D006435 9.1e-17 89.7 68 57.4
Oeu060995.2 Olea europaea HOM05D005275 ORTHO05D006435 9.1e-17 89.7 62 61.3
Prupe.2G313400 Prunus persica HOM05D005275 ORTHO05D006435 9.1e-17 89.7 58 65.5
Psat7g227360 Pisum sativum HOM05D005275 ORTHO05D006435 1.2e-16 89.4 58 65.5
Gohir.A05G287800 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-16 89.0 68 55.9
Gohir.D05G289000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 1.6e-16 89.0 68 55.9
PSO421G0063 Papaver somniferum HOM05D005275 ORTHO05D006435 1.6e-16 89.0 68 57.4
Aqoxy7G03390 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 2.0e-16 88.6 68 58.8
CANSAT21G1202 Cannabis sativa HOM05D005275 ORTHO05D006435 2.0e-16 88.6 61 65.6
Phvul.008G150700 Phaseolus vulgaris HOM05D005275 ORTHO05D006435 2.0e-16 88.6 62 62.9
arahy.Tifrunner.gnm1.ann1.5IWG5U Arachis hypogaea HOM05D005275 ORTHO05D006435 2.7e-16 88.2 68 57.4
Ca_10483_v3 Cicer arietinum L. HOM05D005275 ORTHO05D006435 3.5e-16 87.8 58 63.8
Nitab4.5_0000006g0650 Nicotiana tabacum HOM05D005275 ORTHO05D006435 3.5e-16 87.8 62 61.3
Oeu037051.1 Olea europaea HOM05D005275 ORTHO05D006435 3.5e-16 87.8 58 62.1
SHI02356 Sapria himalayana HOM05D005275 ORTHO05D006435 3.5e-16 87.8 62 59.7
Solyc05g032880.3 Solanum lycopersicum HOM05D005275 ORTHO05D006435 3.5e-16 87.8 62 61.3
Sopen05g023270 Solanum pennellii HOM05D005275 ORTHO05D006435 3.5e-16 87.8 62 61.3
Carub.0008s1327 Capsella rubella HOM05D005275 ORTHO05D006435 4.5e-16 87.4 60 60.0
AUR62002807 Chenopodium quinoa HOM05D005275 ORTHO05D006435 4.5e-16 87.4 62 56.5
DCAR_008951 Daucus carota HOM05D005275 ORTHO05D006435 4.5e-16 87.4 62 61.3
Thhalv10014627m.g Eutrema salsugineum HOM05D005275 ORTHO05D006435 4.5e-16 87.4 60 60.0
Gohir.A12G115900 Gossypium hirsutum HOM05D005275 ORTHO05D006435 4.5e-16 87.4 68 54.4
Gorai.009G304100 Gossypium raimondii HOM05D005275 ORTHO05D006435 4.5e-16 87.4 68 54.4
Rhsim03G0210600 Rhododendron simsii HOM05D005275 ORTHO05D006435 4.5e-16 87.4 56 67.9
vmacro06395 Vaccinium macrocarpon HOM05D005275 ORTHO05D006435 4.5e-16 87.4 55 69.1
Zm00001eb199670 Zea mays HOM05D005275 ORTHO05D006435 4.5e-16 87.4 62 61.3
CARHR266090 Cardamine hirsuta HOM05D005275 ORTHO05D006435 5.9e-16 87.0 60 60.0
Gohir.A04G061600 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
Gohir.A10G201500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
Gohir.A11G223000 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
Gohir.A12G028500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
Gohir.A12G032500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
Gohir.D05G384500 Gossypium hirsutum HOM05D005275 ORTHO05D006435 5.9e-16 87.0 68 54.4
MD07G1293600 Malus domestica HOM05D005275 ORTHO05D006435 5.9e-16 87.0 58 65.5
AL8G27700 Arabidopsis lyrata HOM05D005275 ORTHO05D006435 7.7e-16 86.7 60 58.3
ECA236G4645 Erigeron canadensis HOM05D005275 ORTHO05D006435 1.0e-15 86.3 68 54.4
Ah.13g074120 Amaranthus hybridus HOM05D000770 ORTHO05D000586 1.7e-15 85.5 62 62.9
Medtr1g067700 Medicago truncatula HOM05D005275 ORTHO05D006435 1.7e-15 85.5 58 62.1
Medtr5g038540 Medicago truncatula HOM05D005275 ORTHO05D006435 1.7e-15 85.5 58 62.1
Nitab4.5_0004499g0010 Nicotiana tabacum HOM05D005275 ORTHO05D006435 1.7e-15 85.5 62 59.7
Gohir.D01G152400 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.2e-15 85.1 68 52.9
Peaxi162Scf00581g00021 Petunia axillaris HOM05D005275 ORTHO05D006435 2.2e-15 85.1 56 67.9
AT5G53070 Arabidopsis thaliana HOM05D005275 ORTHO05D006435 5.0e-15 84.0 60 58.3
BcaB08g35669 Brassica carinata HOM05D005275 ORTHO05D006435 5.0e-15 84.0 60 60.0
BolC2t08015H Brassica oleracea HOM05D005275 ORTHO05D006435 5.0e-15 84.0 56 64.3
Gohir.A08G051700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 8.5e-15 83.2 68 51.5
MSTRG.48 Avicennia marina HOM05D005275 ORTHO05D006435 1.1e-14 82.8 62 58.1
BcaC03g14459 Brassica carinata HOM05D005275 ORTHO05D006435 1.1e-14 82.8 60 58.3
A02p11320 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-14 82.8 60 58.3
C02p18700 Brassica napus HOM05D005275 ORTHO05D006435 1.1e-14 82.8 60 58.3
BraA02t06194Z Brassica rapa HOM05D005275 ORTHO05D006435 1.1e-14 82.8 60 58.3
QL09p008105 Quercus lobata HOM05D005275 ORTHO05D006435 1.1e-14 82.8 50 74.0
BcaB05g22006 Brassica carinata HOM05D000442 ORTHO05D007032 1.9e-14 82.0 60 56.7
BolC9t57154H Brassica oleracea HOM05D005275 ORTHO05D006435 1.9e-14 82.0 55 63.6
BcaC04g20510 Brassica carinata HOM05D005275 ORTHO05D006435 2.5e-14 81.6 60 56.7
C09p42780 Brassica napus HOM05D005275 ORTHO05D006435 2.5e-14 81.6 60 56.7
Aa31LG3G9390 Aethionema arabicum HOM05D005626 ORTHO05D007372 3.2e-14 81.3 60 55.0
CDE01G0034 Ceratophyllum demersum HOM05D005275 ORTHO05D006435 4.2e-14 80.9 68 52.9
Migut.F01020 Erythranthe guttata HOM05D005275 ORTHO05D006435 7.2e-14 80.1 62 58.1
A10p10560 Brassica napus HOM05D005275 ORTHO05D006435 1.2e-13 79.3 60 55.0
Sp6g15240 Schrenkiella parvula HOM05D005275 ORTHO05D006435 1.2e-13 79.3 60 56.7
Hund20626 Selenicereus undatus HOM05D005275 ORTHO05D006435 1.6e-13 79.0 57 57.9
BraA10t43140Z Brassica rapa HOM05D005275 ORTHO05D006435 4.7e-13 77.4 60 53.3
HPP92_008880 Vanilla planifolia HOM05D005275 ORTHO05D006435 2.3e-12 75.1 62 53.2
Thecc.10G105800 Theobroma cacao HOM05D005275 ORTHO05D006435 6.8e-12 73.6 53 60.4
Lj1C1021T21 Lonicera japonica HOM05D005275 ORTHO05D006435 7.5e-11 70.1 55 58.2
Actinidia08664 Actinidia chinensis HOM05D005275 ORTHO05D006435 2.8e-10 68.2 50 58.0
PSO675G7727 Papaver somniferum HOM05D005275 ORTHO05D006435 3.1e-09 64.7 57 47.4
Zm00001eb397120 Zea mays HOM05D005275 ORTHO05D006435 7.0e-09 63.5 47 57.4
ATR0564G295 Amborella trichopoda HOM05D005275 ORTHO05D006435 1.6e-08 62.4 47 55.3
Zm00001eb089870 Zea mays HOM05D005275 ORTHO05D006435 1.3e-07 59.3 47 53.2
Aqoxy2G00110 Aquilegia oxysepala HOM05D005275 ORTHO05D006435 5.0e-07 57.4 52 50.0
Mapoly0074s0056 Marchantia polymorpha HOM05D005275 ORTHO05D006435 1.1e-06 56.2 62 38.7
Gohir.D09G028700 Gossypium hirsutum HOM05D005275 ORTHO05D006435 2.5e-06 55.1 47 48.9
SMO334G0054 Selaginella moellendorffii HOM05D005275 ORTHO05D006435 4.2e-06 54.3 59 40.7
Lsat_1_v5_gn_9_70281 Lactuca sativa HOM05D005275 ORTHO05D006435 7.2e-06 53.5 39 59.0


User provided reference genes

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