Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10014054m.g Citrus clementina HOM05D005691 ORTHO05D007096 0.0e+00 2620.5 1313 100.0
Atru.chr6.3368 Acer truncatum HOM05D005691 ORTHO05D007096 0.0e+00 2030.8 1333 76.9
Manes.12G061100 Manihot esculenta HOM05D005691 ORTHO05D007096 0.0e+00 1882.1 1332 72.1
Thecc.01G191500 Theobroma cacao HOM05D005691 ORTHO05D007096 0.0e+00 1878.2 1333 71.9
Haze_12684 Corylus avellana HOM05D005691 ORTHO05D007096 0.0e+00 1855.1 1322 71.9
Gohir.A07G191000 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1839.3 1332 70.6
QL08p028494 Quercus lobata HOM05D005691 ORTHO05D007096 0.0e+00 1826.6 1335 70.3
CSS0040753 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1802.3 1335 68.3
Potri.002G221300 Populus trichocarpa HOM05D005691 ORTHO05D007096 0.0e+00 1790.4 1332 69.4
Prupe.3G200800 Prunus persica HOM05D005691 ORTHO05D007096 0.0e+00 1788.5 1330 69.2
CiPaw.03G279200 Carya illinoinensis HOM05D005691 ORTHO05D007096 0.0e+00 1785.0 1329 68.7
Actinidia21444 Actinidia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1770.0 1334 67.1
TWI18G1215 Tripterygium wilfordii HOM05D005691 ORTHO05D007096 0.0e+00 1753.4 1331 68.0
Lj8A134T75 Lonicera japonica HOM05D005691 ORTHO05D007096 0.0e+00 1750.7 1336 66.6
MD17G1113600 Malus domestica HOM05D005691 ORTHO05D007096 0.0e+00 1740.7 1329 68.0
Sabra02G0169100 Salix brachista HOM05D005691 ORTHO05D007096 0.0e+00 1738.4 1375 66.3
RcHm_v2.0_Chr2g0156551 Rosa chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1728.8 1329 66.7
FvH4_6g40930 Fragaria vesca HOM05D005691 ORTHO05D007096 0.0e+00 1727.2 1330 67.1
FAN14G0170 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1723.4 1330 67.0
CANSAT64G0049 Cannabis sativa HOM05D005691 ORTHO05D007096 0.0e+00 1722.6 1334 67.0
vmacro09398 Vaccinium macrocarpon HOM05D005691 ORTHO05D007096 0.0e+00 1722.2 1401 63.7
FAN05G1189 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1720.7 1330 66.7
GSVIVG01030051001 Vitis vinifera HOM05D005691 ORTHO05D007096 0.0e+00 1708.7 1334 66.8
FAN09G3499 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1708.3 1330 66.4
CSS0009966 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 0.0e+00 1706.4 1289 67.0
FAN02G1659 Fragaria x ananassa HOM05D005691 ORTHO05D007096 0.0e+00 1692.6 1345 65.7
Nitab4.5_0009877g0010 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1686.0 1336 64.8
Gorai.001G221100 Gossypium raimondii HOM05D005691 ORTHO05D007096 0.0e+00 1675.6 1216 70.6
Gohir.D07G197400 Gossypium hirsutum HOM05D005691 ORTHO05D007096 0.0e+00 1675.2 1216 70.4
Hma1.2p1_0133F.1_g061380 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1671.8 1257 67.5
Rhsim04G0038700 Rhododendron simsii HOM05D005691 ORTHO05D007096 0.0e+00 1670.6 1477 60.0
PGSC0003DMG400006150 Solanum tuberosum HOM05D005691 ORTHO05D007096 0.0e+00 1665.2 1337 63.5
Nitab4.5_0000441g0080 Nicotiana tabacum HOM05D005691 ORTHO05D007096 0.0e+00 1662.1 1336 64.3
Peaxi162Scf00776g00233 Petunia axillaris HOM05D005691 ORTHO05D007096 0.0e+00 1657.9 1346 63.7
Glyma.14G008200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1656.0 1331 64.0
Sopen07g024300 Solanum pennellii HOM05D005691 ORTHO05D007096 0.0e+00 1652.5 1337 63.3
Eucgr.A01048 Eucalyptus grandis HOM05D005691 ORTHO05D007096 0.0e+00 1649.8 1334 63.6
LjContig00081g0016683 Lotus japonicus HOM05D005691 ORTHO05D007096 0.0e+00 1647.9 1331 63.9
Nn1g07449 Nelumbo nucifera HOM05D005691 ORTHO05D007096 0.0e+00 1642.5 1332 64.0
CAN.G854.9 Capsicum annuum HOM05D005691 ORTHO05D007096 0.0e+00 1638.6 1341 62.9
Glyma.02G305200 Glycine max HOM05D005691 ORTHO05D007096 0.0e+00 1636.7 1331 63.6
Psat2g005000 Pisum sativum HOM05D005691 ORTHO05D007096 0.0e+00 1630.2 1333 64.1
arahy.Tifrunner.gnm1.ann1.2CK2M8 Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1629.8 1309 64.1
arahy.Tifrunner.gnm1.ann1.5BD1HA Arachis hypogaea HOM05D005691 ORTHO05D007096 0.0e+00 1627.5 1339 62.8
Cc00_g04460 Coffea canephora HOM05D005691 ORTHO05D007096 0.0e+00 1622.8 1338 61.7
Lalb_Chr10g0107611 Lupinus albus HOM05D005691 ORTHO05D007096 0.0e+00 1614.7 1332 63.3
PGR042G3586 Punica granatum HOM05D005691 ORTHO05D007096 0.0e+00 1614.7 1334 63.3
PSO675G5893 Papaver somniferum HOM05D005691 ORTHO05D007096 0.0e+00 1613.2 1338 62.2
Medtr5g097260 Medicago truncatula HOM05D005691 ORTHO05D007096 0.0e+00 1612.0 1331 62.9
Phvul.008G284900 Phaseolus vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1609.7 1329 62.5
Ca_06452_v3 Cicer arietinum L. HOM05D005691 ORTHO05D007096 0.0e+00 1605.5 1331 62.7
TPR.G1235 Trifolium pratense HOM05D005691 ORTHO05D007096 0.0e+00 1604.0 1332 63.1
MSTRG.6644 Avicennia marina HOM05D005691 ORTHO05D007096 0.0e+00 1602.8 1327 61.7
ClCG02G002780 Citrullus lanatus HOM05D005691 ORTHO05D007096 0.0e+00 1600.9 1337 62.8
Hund01594 Selenicereus undatus HOM05D005691 ORTHO05D007096 0.0e+00 1593.6 1338 62.5
MELO3C024202.2 Cucumis melo HOM05D005691 ORTHO05D007096 0.0e+00 1588.5 1336 62.4
VMungo0647G0393 Vigna mungo HOM05D005691 ORTHO05D007096 0.0e+00 1587.8 1331 62.3
Dinv07866 Davidia involucrata HOM05D005691 ORTHO05D007096 0.0e+00 1585.5 1333 62.9
Sc21g0000790 Simmondsia chinensis HOM05D005691 ORTHO05D007096 0.0e+00 1585.1 1334 60.9
Migut.M00032 Erythranthe guttata HOM05D005691 ORTHO05D007096 0.0e+00 1574.7 1313 61.4
CsaV3_7G002600 Cucumis sativus L. HOM05D005691 ORTHO05D007096 0.0e+00 1572.8 1337 61.5
AUR62015058 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1570.4 1340 61.2
EL10Ac9g22718 Beta vulgaris HOM05D005691 ORTHO05D007096 0.0e+00 1568.9 1335 61.1
THA.LOC104815358 Tarenaya hassleriana HOM05D005691 ORTHO05D007096 0.0e+00 1567.4 1337 61.8
Aqoxy4G02218 Aquilegia oxysepala HOM05D005691 ORTHO05D007096 0.0e+00 1566.6 1345 61.0
AUR62017514 Chenopodium quinoa HOM05D005691 ORTHO05D007096 0.0e+00 1565.1 1342 61.1
MBI16_g26390_MAGBIO Magnolia biondii HOM05D005691 ORTHO05D007096 0.0e+00 1558.5 1338 60.8
Oeu029977.1 Olea europaea HOM05D005691 ORTHO05D007096 0.0e+00 1557.7 1318 61.9
DCAR_019708 Daucus carota HOM05D005691 ORTHO05D007096 0.0e+00 1536.5 1331 60.5
Sed0003649 Sechium edule HOM05D005691 ORTHO05D007096 0.0e+00 1535.0 1338 60.9
ECA240G2675 Erigeron canadensis HOM05D005691 ORTHO05D007096 0.0e+00 1532.7 1336 60.2
HanXRQChr03g0075241 Helianthus annuus HOM05D005691 ORTHO05D007096 0.0e+00 1510.7 1326 59.4
Thhalv10003521m.g Eutrema salsugineum HOM05D005691 ORTHO05D007096 0.0e+00 1503.4 1334 59.0
AL3G42730 Arabidopsis lyrata HOM05D005691 ORTHO05D007096 0.0e+00 1492.2 1331 58.9
Carub.0003s2665 Capsella rubella HOM05D005691 ORTHO05D007096 0.0e+00 1476.1 1333 58.0
Sp3g23610 Schrenkiella parvula HOM05D005691 ORTHO05D007096 0.0e+00 1451.4 1333 57.5
BraA03t13590Z Brassica rapa HOM05D005691 ORTHO05D007096 0.0e+00 1444.5 1328 57.9
SalBow7G1588 Salvia bowleyana HOM05D005691 ORTHO05D007096 0.0e+00 1438.7 1319 57.9
A03p44570 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1437.2 1328 57.5
BcaB08g34496 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1428.7 1332 57.6
BcaC01g03178 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1428.7 1329 57.0
BolC3t17809H Brassica oleracea HOM05D005691 ORTHO05D007096 0.0e+00 1428.7 1329 57.0
C03p55370 Brassica napus HOM05D005691 ORTHO05D007096 0.0e+00 1427.5 1329 57.0
BcaB06g26838 Brassica carinata HOM05D005691 ORTHO05D007096 0.0e+00 1427.2 1333 56.3
SGA_v2.0_scaffold73G24511 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1408.7 1254 57.9
ATR1149G135 Amborella trichopoda HOM05D005691 ORTHO05D007096 0.0e+00 1400.6 1326 56.6
Lsat_1_v5_gn_9_104801 Lactuca sativa HOM05D005691 ORTHO05D007096 0.0e+00 1389.4 1322 56.4
CARHR103010 Cardamine hirsuta HOM05D005691 ORTHO05D007096 0.0e+00 1290.4 1097 61.1
SGA_v2.0_scaffold292G47401 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1279.2 1317 52.7
SGA_v2.0_scaffold292G47412 Striga asiatica HOM05D005691 ORTHO05D007096 0.0e+00 1258.8 1314 52.0
TAR626G1898 Trochodendron aralioides HOM05D005691 ORTHO05D007096 0.0e+00 1257.3 987 66.9
Zm00001eb399630 Zea mays HOM05D005691 ORTHO05D007096 0.0e+00 1254.6 1323 51.6
Os03g0225500 Oryza sativa ssp. japonica HOM05D005691 ORTHO05D007096 0.0e+00 1247.6 1322 50.5
Hma1.2p1_0133F.1_g061370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 0.0e+00 1239.9 906 69.0
AT2G05120 Arabidopsis thaliana HOM05D005691 ORTHO05D007096 0.0e+00 1219.9 987 64.1
SEGI_38606 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 0.0e+00 1206.4 1339 49.4
SHI10144 Sapria himalayana HOM05D005691 ORTHO05D007096 0.0e+00 1174.1 1240 53.1
Solyc07g047860.4 Solanum lycopersicum HOM05D005691 ORTHO05D007096 0.0e+00 1112.8 861 66.0
BcaC06g35896 Brassica carinata HOM05D005691 ORTHO05D007096 1.3e-292 1010.4 1299 46.8
Mapoly0061s0124 Marchantia polymorpha HOM05D005691 ORTHO05D007096 1.1e-278 964.1 1342 42.3
SMO351G0158 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 2.9e-252 876.3 1284 41.1
unitig_746.g26642 Utricularia gibba HOM05D005691 ORTHO05D007096 4.8e-247 859.0 1307 40.9
CDE04G3337 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 8.8e-233 811.6 959 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2878 Anthoceros agrestis HOM05D005691 ORTHO05D007096 2.0e-232 810.4 1131 41.6
Pp3c21_14430 Physcomitrium patens HOM05D005691 ORTHO05D007096 4.1e-230 802.7 1326 37.3
COL.COLO4_09230 Corchorus olitorius HOM05D005691 ORTHO05D007096 3.2e-190 670.2 585 62.4
COL.COLO4_09229 Corchorus olitorius HOM05D005691 ORTHO05D007096 4.3e-187 659.8 483 68.7
HPP92_000880 Vanilla planifolia HOM05D005691 ORTHO05D007096 2.7e-165 587.4 587 52.8
CBR_g39814 Chara braunii HOM05D005691 ORTHO05D007096 6.3e-130 469.9 1140 29.9
Cpa.g.sc211.12 Carica papaya HOM05D005691 ORTHO05D007096 4.1e-113 414.1 291 69.8
Cpa.g.sc211.9 Carica papaya HOM05D005691 ORTHO05D007096 5.3e-113 413.7 325 65.8
CDE04G1592 Ceratophyllum demersum HOM05D005691 ORTHO05D007096 3.5e-104 384.4 330 58.8
SMO351G0109 Selaginella moellendorffii HOM05D005691 ORTHO05D007096 1.6e-93 349.0 1059 29.2
HPP92_000881 Vanilla planifolia HOM05D005691 ORTHO05D007096 4.7e-93 347.4 356 54.8
C07p09910 Brassica napus HOM05D005691 ORTHO05D007096 3.3e-86 324.7 261 67.4
TAR626G0169 Trochodendron aralioides HOM05D005691 ORTHO05D007096 2.9e-66 258.5 233 57.9
C07p09950 Brassica napus HOM05D005691 ORTHO05D007096 3.0e-63 248.4 311 46.0
Hma1.2p1_1825F.1_g304370 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.7e-58 231.5 204 58.3
Hma1.2p1_1825F.1_g304360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 1.2e-53 216.5 151 70.9
BolC7t41441H Brassica oleracea HOM05D005691 ORTHO05D007096 6.2e-53 214.2 302 43.7
Hma1.2p1_0133F.1_g061390 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 3.1e-52 211.8 177 59.3
C07p09940 Brassica napus HOM05D005691 ORTHO05D007096 1.3e-37 163.3 119 67.2
PGR042G0477 Punica granatum HOM05D005691 ORTHO05D007096 5.1e-31 141.4 129 61.2
MCO12G144 Micromonas commoda HOM05D005691 ORTHO05D007096 2.8e-29 135.6 662 25.2
PGR042G0061 Punica granatum HOM05D005691 ORTHO05D007096 5.5e-25 121.3 122 52.5
SalBow7G3724 Salvia bowleyana HOM05D005691 ORTHO05D007096 2.9e-18 99.0 102 45.1
SHI10145 Sapria himalayana HOM05D005691 ORTHO05D007096 2.5e-17 95.9 105 48.6
CSS0045948 Camellia sinensis var. sinensis HOM05D005691 ORTHO05D007096 5.7e-14 84.7 74 55.4
Hma1.2p1_0133F.1_g061360 Hydrangea macrophylla HOM05D005691 ORTHO05D007096 4.8e-13 81.6 65 64.6
Ah.01g013690 Amaranthus hybridus HOM05D005691 ORTHO05D007096 5.1e-07 61.6 71 50.7
Ah.14g082590 Amaranthus hybridus HOM05D005691 ORTHO05D007096 5.1e-07 61.6 71 50.7
BolC7t41436H Brassica oleracea HOM05D005691 ORTHO05D007096 5.7e-06 58.2 137 31.4
SEGI_34592 Sequoiadendron giganteum HOM05D005691 ORTHO05D007096 9.7e-06 57.4 36 72.2


User provided reference genes

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