Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10011677m.g Citrus clementina HOM05D005824 ORTHO05D007029 1.2e-256 889.4 461 100.0
Atru.chr12.1601 Acer truncatum HOM05D005824 ORTHO05D007029 3.2e-153 545.8 469 64.0
QL07p026733 Quercus lobata HOM05D005824 ORTHO05D007029 4.7e-141 505.4 475 60.4
CSS0029355 Camellia sinensis var. sinensis HOM05D005824 ORTHO05D007029 5.4e-137 491.9 466 58.4
GSVIVG01031305001 Vitis vinifera HOM05D005824 ORTHO05D007029 6.6e-135 485.0 477 56.4
Cfa020078 Carpinus fangiana HOM05D005824 ORTHO05D007029 8.1e-133 478.0 469 57.8
CiPaw.10G020000 Carya illinoinensis HOM05D005824 ORTHO05D007029 1.4e-132 477.2 481 56.1
Sabra15G0009000 Salix brachista HOM05D005824 ORTHO05D007029 1.4e-129 467.2 475 54.9
Potri.015G010900 Populus trichocarpa HOM05D005824 ORTHO05D007029 1.9e-129 466.8 472 54.4
Dinv24497 Davidia involucrata HOM05D005824 ORTHO05D007029 1.9e-126 456.8 460 55.4
Thecc.09G352900 Theobroma cacao HOM05D005824 ORTHO05D007029 2.0e-123 446.8 508 51.6
Eucgr.B01798 Eucalyptus grandis HOM05D005824 ORTHO05D007029 3.4e-123 446.0 472 53.0
arahy.Tifrunner.gnm1.ann1.S86EGP Arachis hypogaea HOM05D005824 ORTHO05D007029 5.4e-121 438.7 524 49.2
arahy.Tifrunner.gnm1.ann1.E5V6X9 Arachis hypogaea HOM05D005824 ORTHO05D007029 7.1e-121 438.3 524 49.2
Gorai.005G200700 Gossypium raimondii HOM05D005824 ORTHO05D007029 3.5e-120 436.0 466 53.9
Prupe.6G306900 Prunus persica HOM05D005824 ORTHO05D007029 3.5e-120 436.0 514 50.4
Gohir.A03G155800 Gossypium hirsutum HOM05D005824 ORTHO05D007029 4.6e-120 435.6 509 52.1
Manes.06G027100 Manihot esculenta HOM05D005824 ORTHO05D007029 4.6e-120 435.6 470 54.0
Ca_11665_v3 Cicer arietinum L. HOM05D005824 ORTHO05D007029 2.3e-119 433.3 478 52.5
VMungo0720G2244 Vigna mungo HOM05D005824 ORTHO05D007029 3.0e-119 433.0 503 50.9
Lalb_Chr02g0154321 Lupinus albus HOM05D005824 ORTHO05D007029 1.5e-118 430.6 518 49.8
Cpa.g.sc48.209 Carica papaya HOM05D005824 ORTHO05D007029 1.9e-118 430.3 467 52.7
Lj3g0001001 Lotus japonicus HOM05D005824 ORTHO05D007029 1.9e-118 430.3 519 48.9
Haze_20113 Corylus avellana HOM05D005824 ORTHO05D007029 2.5e-118 429.9 533 49.7
Lj5g0026124 Lotus japonicus HOM05D005824 ORTHO05D007029 3.3e-118 429.5 520 49.2
Rhsim11G0099700 Rhododendron simsii HOM05D005824 ORTHO05D007029 4.8e-117 425.6 463 52.3
MSTRG.15631 Avicennia marina HOM05D005824 ORTHO05D007029 7.1e-113 411.8 472 52.5
Cc02_g35570 Coffea canephora HOM05D005824 ORTHO05D007029 1.2e-112 411.0 456 52.0
Glyma.02G192500 Glycine max HOM05D005824 ORTHO05D007029 6.0e-112 408.7 513 47.6
Peaxi162Scf00357g00429 Petunia axillaris HOM05D005824 ORTHO05D007029 1.0e-111 407.9 478 50.4
Psat6g118640 Pisum sativum HOM05D005824 ORTHO05D007029 1.3e-111 407.5 525 46.9
Medtr1g055080 Medicago truncatula HOM05D005824 ORTHO05D007029 5.1e-111 405.6 511 47.6
TWI38G0226 Tripterygium wilfordii HOM05D005824 ORTHO05D007029 6.7e-111 405.2 464 51.3
Oeu061927.1 Olea europaea HOM05D005824 ORTHO05D007029 1.5e-110 404.1 521 48.6
Glyma.10G084300 Glycine max HOM05D005824 ORTHO05D007029 5.6e-110 402.1 386 55.7
Sopen01g044470 Solanum pennellii HOM05D005824 ORTHO05D007029 7.4e-110 401.7 471 50.5
TPR.G12910 Trifolium pratense HOM05D005824 ORTHO05D007029 1.6e-109 400.6 513 47.8
Gohir.D02G178900 Gossypium hirsutum HOM05D005824 ORTHO05D007029 2.8e-109 399.8 464 50.9
COL.COLO4_11087 Corchorus olitorius HOM05D005824 ORTHO05D007029 8.1e-109 398.3 415 53.3
CAN.G1374.10 Capsicum annuum HOM05D005824 ORTHO05D007029 4.0e-108 396.0 484 48.8
TPR.G21237 Trifolium pratense HOM05D005824 ORTHO05D007029 6.9e-108 395.2 525 47.0
Nitab4.5_0009690g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 9.0e-108 394.8 481 50.9
PGSC0003DMG400018251 Solanum tuberosum HOM05D005824 ORTHO05D007029 2.6e-107 393.3 475 49.5
CANSAT54G1845 Cannabis sativa HOM05D005824 ORTHO05D007029 3.4e-107 392.9 519 45.7
SGA_v2.0_scaffold33G13450 Striga asiatica HOM05D005824 ORTHO05D007029 7.6e-107 391.7 492 47.6
TAR362G0448 Trochodendron aralioides HOM05D005824 ORTHO05D007029 1.3e-106 391.0 473 49.7
MD12G1202100 Malus domestica HOM05D005824 ORTHO05D007029 2.2e-106 390.2 509 47.5
THA.LOC104821746 Tarenaya hassleriana HOM05D005824 ORTHO05D007029 1.1e-105 387.9 470 49.1
Duzib168G0004 Durio zibethinus HOM05D005824 ORTHO05D007029 1.9e-105 387.1 344 59.9
SalBow7G3942 Salvia bowleyana HOM05D005824 ORTHO05D007029 5.5e-105 385.6 465 48.4
PSO339G3868 Papaver somniferum HOM05D005824 ORTHO05D007029 2.1e-104 383.6 469 48.2
FvH4_6g08180 Fragaria vesca HOM05D005824 ORTHO05D007029 3.0e-103 379.8 532 44.7
FAN14G3202 Fragaria x ananassa HOM05D005824 ORTHO05D007029 6.7e-103 378.6 532 44.5
AUR62006798 Chenopodium quinoa HOM05D005824 ORTHO05D007029 8.7e-103 378.3 468 48.1
Phvul.007G265900 Phaseolus vulgaris HOM05D005824 ORTHO05D007029 8.7e-103 378.3 513 45.6
PSO384G0570 Papaver somniferum HOM05D005824 ORTHO05D007029 3.3e-102 376.3 475 48.0
ECA247G2466 Erigeron canadensis HOM05D005824 ORTHO05D007029 5.6e-102 375.6 468 47.6
Migut.B00860 Erythranthe guttata HOM05D005824 ORTHO05D007029 5.6e-102 375.6 462 48.9
MBI19_g32704_MAGBIO Magnolia biondii HOM05D005824 ORTHO05D007029 7.4e-102 375.2 535 44.7
RcHm_v2.0_Chr3g0458051 Rosa chinensis HOM05D005824 ORTHO05D007029 1.3e-101 374.4 534 44.6
PSO017G5895 Papaver somniferum HOM05D005824 ORTHO05D007029 6.2e-101 372.1 467 46.7
PSO063G2449 Papaver somniferum HOM05D005824 ORTHO05D007029 6.2e-101 372.1 358 55.6
AUR62000450 Chenopodium quinoa HOM05D005824 ORTHO05D007029 1.4e-100 370.9 476 47.5
vmacro01596 Vaccinium macrocarpon HOM05D005824 ORTHO05D007029 1.4e-100 370.9 449 49.0
ClCG07G011770 Citrullus lanatus HOM05D005824 ORTHO05D007029 4.0e-100 369.4 478 47.1
MD04G1189300 Malus domestica HOM05D005824 ORTHO05D007029 5.3e-100 369.0 509 45.4
CsaV3_4G002430 Cucumis sativus L. HOM05D005824 ORTHO05D007029 1.2e-99 367.9 478 46.9
Duzib150G0567 Durio zibethinus HOM05D005824 ORTHO05D007029 5.8e-99 365.5 468 48.9
Hund21844 Selenicereus undatus HOM05D005824 ORTHO05D007029 7.6e-99 365.2 467 47.3
DCAR_005271 Daucus carota HOM05D005824 ORTHO05D007029 1.0e-98 364.8 482 46.1
FAN09G3961 Fragaria x ananassa HOM05D005824 ORTHO05D007029 3.8e-98 362.8 533 43.7
Sc09g0002470 Simmondsia chinensis HOM05D005824 ORTHO05D007029 4.9e-98 362.5 459 48.6
Aqoxy2G02580 Aquilegia oxysepala HOM05D005824 ORTHO05D007029 8.4e-98 361.7 469 45.6
MELO3C017799.2 Cucumis melo HOM05D005824 ORTHO05D007029 2.7e-96 356.7 478 46.0
Lj5A322T66 Lonicera japonica HOM05D005824 ORTHO05D007029 2.7e-96 356.7 424 49.3
Nn2g14227 Nelumbo nucifera HOM05D005824 ORTHO05D007029 2.5e-94 350.1 474 45.1
EL10Ac4g09532 Beta vulgaris HOM05D005824 ORTHO05D007029 8.2e-93 345.1 457 46.4
Sed0007659 Sechium edule HOM05D005824 ORTHO05D007029 1.3e-90 337.8 478 42.5
AT5G26760 Arabidopsis thaliana HOM05D005824 ORTHO05D007029 3.2e-89 333.2 431 46.9
AL6G38630 Arabidopsis lyrata HOM05D005824 ORTHO05D007029 2.7e-88 330.1 472 43.4
Nitab4.5_0000185g0360 Nicotiana tabacum HOM05D005824 ORTHO05D007029 3.6e-88 329.7 475 44.4
Carub.0006s2449 Capsella rubella HOM05D005824 ORTHO05D007029 4.6e-88 329.3 429 45.5
Sp2g21220 Schrenkiella parvula HOM05D005824 ORTHO05D007029 1.0e-87 328.2 455 45.5
Hma1.2p1_1243F.1_g269980 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 5.1e-87 325.9 377 50.1
C02p58640 Brassica napus HOM05D005824 ORTHO05D007029 3.3e-86 323.2 328 53.7
BolC2t11924H Brassica oleracea HOM05D005824 ORTHO05D007029 3.3e-86 323.2 322 54.3
A02p39030 Brassica napus HOM05D005824 ORTHO05D007029 2.8e-85 320.1 330 53.6
BraA02t08872Z Brassica rapa HOM05D005824 ORTHO05D007029 2.8e-85 320.1 330 53.6
Thhalv10003721m.g Eutrema salsugineum HOM05D005824 ORTHO05D007029 4.8e-85 319.3 549 40.6
CARHR186810 Cardamine hirsuta HOM05D005824 ORTHO05D007029 2.0e-83 313.9 546 40.8
Aa31LG11G9880 Aethionema arabicum HOM05D005824 ORTHO05D007029 1.9e-81 307.4 523 40.3
FAN02G4519 Fragaria x ananassa HOM05D005824 ORTHO05D007029 1.9e-81 307.4 512 41.0
FAN05G5613 Fragaria x ananassa HOM05D005824 ORTHO05D007029 4.2e-81 306.2 506 40.5
Ah.10g027060 Amaranthus hybridus HOM05D005824 ORTHO05D007029 9.4e-81 305.1 490 41.2
BcaNung06222 Brassica carinata HOM05D005824 ORTHO05D007029 6.7e-79 298.9 322 52.2
ATR0693G066 Amborella trichopoda HOM05D005824 ORTHO05D007029 3.2e-73 280.0 343 46.1
unitig_748.g6998 Utricularia gibba HOM05D005824 ORTHO05D000260 1.1e-70 271.6 453 40.4
C07p41490 Brassica napus HOM05D005824 ORTHO05D007029 2.6e-70 270.4 466 39.5
Os05g0134300 Oryza sativa ssp. japonica HOM05D005824 ORTHO05D007029 5.7e-70 269.2 336 45.5
BcaNung03676 Brassica carinata HOM05D005824 ORTHO05D007029 2.4e-68 263.8 456 39.3
BolC7t44682H Brassica oleracea HOM05D005824 ORTHO05D007029 5.3e-68 262.7 460 39.3
Lsat_1_v5_gn_9_78801 Lactuca sativa HOM05D005824 ORTHO05D007029 5.3e-68 262.7 418 42.3
HPP92_021934 Vanilla planifolia HOM05D005824 ORTHO05D007029 2.0e-67 260.8 474 37.8
HanXRQChr12g0362901 Helianthus annuus HOM05D005824 ORTHO05D007029 2.1e-64 250.8 332 48.5
CDE01G0540 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 7.5e-62 242.3 476 36.1
Nitab4.5_0002783g0020 Nicotiana tabacum HOM05D005824 ORTHO05D007029 4.5e-59 233.0 466 36.9
Gohir.A08G201701 Gossypium hirsutum HOM05D005824 ORTHO05D007029 1.0e-58 231.9 473 37.8
Nitab4.5_0000185g0370 Nicotiana tabacum HOM05D005824 ORTHO05D007029 6.5e-58 229.2 274 45.3
PGR083G1123 Punica granatum HOM05D005824 ORTHO05D007029 1.5e-49 201.4 308 44.5
Mapoly0075s0015 Marchantia polymorpha HOM05D005824 ORTHO05D007029 1.8e-47 194.5 298 38.6
SEGI_20129 Sequoiadendron giganteum HOM05D005824 ORTHO05D007029 2.6e-46 190.7 236 44.5
Zm00001eb354720 Zea mays HOM05D005824 ORTHO05D007029 1.7e-45 188.0 232 46.6
Pp3c6_10400 Physcomitrium patens HOM05D005824 ORTHO05D007029 1.1e-44 185.3 184 47.8
Hma1.2p1_1553F.1_g290340 Hydrangea macrophylla HOM05D005824 ORTHO05D007029 5.4e-44 183.0 437 35.7
A06p36990 Brassica napus HOM05D005824 ORTHO05D007029 7.8e-43 179.1 176 52.8
BraA06t26625Z Brassica rapa HOM05D005824 ORTHO05D007029 7.8e-43 179.1 176 52.8
SMO203G0090 Selaginella moellendorffii HOM05D005824 ORTHO05D007029 6.8e-39 166.0 321 36.1
Actinidia35501 Actinidia chinensis HOM05D005824 ORTHO05D007029 2.9e-37 160.6 453 29.8
AagrBONN_evm.TU.Sc2ySwM_117.2728 Anthoceros agrestis HOM05D005824 ORTHO05D007029 9.2e-36 155.6 190 41.1
CBR_g20185 Chara braunii HOM05D005824 ORTHO05D007029 1.3e-34 151.8 439 27.8
Cfa020079 Carpinus fangiana HOM05D005824 ORTHO05D007029 7.5e-30 136.0 82 79.3
CANSAT54G0922 Cannabis sativa HOM05D005824 ORTHO05D007029 9.8e-30 135.6 170 47.6
CDE12G0845 Ceratophyllum demersum HOM05D005824 ORTHO05D007029 5.6e-17 93.2 96 49.0
AUR62009842 Chenopodium quinoa HOM05D003327 ORTHO05D004535 1.4e-12 78.6 166 38.0
VMungo0251G1262 Vigna mungo HOM05D005824 ORTHO05D007029 3.9e-10 70.5 94 53.2


User provided reference genes

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