Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10006661m.g Citrus clementina HOM05D004663 ORTHO05D006325 2.0e-124 449.1 225 100.0
Atru.chr11.1191 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-82 310.5 225 70.7
Atru.chr11.1197 Acer truncatum HOM05D004663 ORTHO05D006325 1.1e-82 310.5 225 70.7
GSVIVG01010186001 Vitis vinifera HOM05D004663 ORTHO05D006325 3.6e-78 295.4 233 66.1
Thecc.02G295300 Theobroma cacao HOM05D004663 ORTHO05D006325 1.3e-75 287.0 172 80.8
TWI74G1669 Tripterygium wilfordii HOM05D004663 ORTHO05D006325 6.4e-75 284.6 225 65.3
MSTRG.8079 Avicennia marina HOM05D004663 ORTHO05D006325 4.1e-74 282.0 191 74.3
COL.COLO4_16617 Corchorus olitorius HOM05D004663 ORTHO05D006325 4.1e-74 282.0 174 77.0
Nn4g24912 Nelumbo nucifera HOM05D004663 ORTHO05D006325 6.0e-73 278.1 226 64.2
Duzib251G0299 Durio zibethinus HOM05D004663 ORTHO05D006325 7.8e-73 277.7 174 77.6
Manes.03G082300 Manihot esculenta HOM05D004663 ORTHO05D006325 5.1e-72 275.0 224 65.6
Nitab4.5_0002192g0110 Nicotiana tabacum HOM05D004663 ORTHO05D006325 5.1e-72 275.0 241 62.7
Actinidia13293 Actinidia chinensis HOM05D004663 ORTHO05D006325 1.9e-71 273.1 239 60.3
Carub.0003s1841 Capsella rubella HOM05D004663 ORTHO05D006325 3.3e-71 272.3 234 62.0
Eucgr.J00843 Eucalyptus grandis HOM05D004663 ORTHO05D006325 4.3e-71 271.9 230 60.4
Hma1.2p1_0499F.1_g166860 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.3e-71 271.9 240 61.7
Hma1.2p1_0499F.1_g166870 Hydrangea macrophylla HOM05D004663 ORTHO05D006325 4.3e-71 271.9 240 61.7
Migut.L00857 Erythranthe guttata HOM05D004663 ORTHO05D006325 7.3e-71 271.2 227 63.0
Glyma.12G028400 Glycine max HOM05D004663 ORTHO05D006325 7.3e-71 271.2 224 61.2
Dinv11709 Davidia involucrata HOM05D004663 ORTHO05D006325 1.2e-70 270.4 237 59.5
Gohir.A12G152600 Gossypium hirsutum HOM05D004663 ORTHO05D006325 1.2e-70 270.4 201 71.1
MD16G1006100 Malus domestica HOM05D004663 ORTHO05D006325 2.1e-70 269.6 228 64.5
SGA_v2.0_scaffold258G45746 Striga asiatica HOM05D004663 ORTHO05D006325 2.1e-70 269.6 186 70.4
arahy.Tifrunner.gnm1.ann1.W91FXI Arachis hypogaea HOM05D004663 ORTHO05D006325 2.8e-70 269.2 226 63.3
Potri.010G169600 Populus trichocarpa HOM05D004663 ORTHO05D006325 2.8e-70 269.2 225 63.6
arahy.Tifrunner.gnm1.ann1.NK7YGL Arachis hypogaea HOM05D004663 ORTHO05D006325 8.1e-70 267.7 226 63.3
Prupe.1G344500 Prunus persica HOM05D004663 ORTHO05D006325 8.1e-70 267.7 228 62.7
Lj3g0017139 Lotus japonicus HOM05D004663 ORTHO05D006325 1.1e-69 267.3 226 62.4
AL3G31940 Arabidopsis lyrata HOM05D004663 ORTHO05D006325 1.8e-69 266.5 236 62.7
Gorai.008G168600 Gossypium raimondii HOM05D004663 ORTHO05D006325 1.8e-69 266.5 201 70.1
PGSC0003DMG400019834 Solanum tuberosum HOM05D004663 ORTHO05D006325 2.4e-69 266.2 230 63.9
Gohir.D12G156000 Gossypium hirsutum HOM05D004663 ORTHO05D006325 5.2e-69 265.0 201 70.1
THA.LOC104820417 Tarenaya hassleriana HOM05D004663 ORTHO05D006325 6.8e-69 264.6 236 61.4
CAN.G1846.2 Capsicum annuum HOM05D004663 ORTHO05D006325 8.9e-69 264.2 175 74.3
Nitab4.5_0004043g0010 Nicotiana tabacum HOM05D004663 ORTHO05D006325 1.2e-68 263.8 240 62.1
DCAR_026912 Daucus carota HOM05D004663 ORTHO05D006325 1.5e-68 263.5 199 67.3
MBI03_g05116_MAGBIO Magnolia biondii HOM05D004663 ORTHO05D006325 1.5e-68 263.5 216 64.4
Sc10g0005860 Simmondsia chinensis HOM05D004663 ORTHO05D006325 1.5e-68 263.5 185 70.3
CSS0001950 Camellia sinensis var. sinensis HOM05D004663 ORTHO05D006325 2.0e-68 263.1 242 58.3
Phvul.011G031800 Phaseolus vulgaris HOM05D004663 ORTHO05D006325 2.0e-68 263.1 224 59.8
AT3G18630 Arabidopsis thaliana HOM05D004663 ORTHO05D006325 2.6e-68 262.7 235 61.3
Solyc02g021060.4 Solanum lycopersicum HOM05D004663 ORTHO05D006325 2.6e-68 262.7 211 66.8
Sopen02g005340 Solanum pennellii HOM05D004663 ORTHO05D006325 2.6e-68 262.7 211 66.8
Thhalv10021116m.g Eutrema salsugineum HOM05D004663 ORTHO05D006325 3.4e-68 262.3 235 60.9
PSO017G2988 Papaver somniferum HOM05D004663 ORTHO05D006325 3.4e-68 262.3 224 61.6
Aa31LG8G5480 Aethionema arabicum HOM05D004663 ORTHO05D006325 4.4e-68 261.9 227 63.0
VMungo1127G1383 Vigna mungo HOM05D004663 ORTHO05D006325 4.4e-68 261.9 224 58.9
Cc11_g05100 Coffea canephora HOM05D004663 ORTHO05D006325 5.8e-68 261.5 238 62.6
Duzib128G0407 Durio zibethinus HOM05D004663 ORTHO05D006325 9.9e-68 260.8 174 74.7
Cpa.g.sc0.166 Carica papaya HOM05D004663 ORTHO05D006325 1.3e-67 260.4 219 63.9
HanXRQChr13g0390021 Helianthus annuus HOM05D004663 ORTHO05D006325 1.3e-67 260.4 174 70.7
Hund24313 Selenicereus undatus HOM05D004663 ORTHO05D006325 1.7e-67 260.0 198 65.7
TAR628G1419 Trochodendron aralioides HOM05D004663 ORTHO05D006325 1.7e-67 260.0 229 59.8
BcaB06g25915 Brassica carinata HOM05D004663 ORTHO05D006325 2.2e-67 259.6 227 60.8
Cfa008725 Carpinus fangiana HOM05D004663 ORTHO05D006325 2.9e-67 259.2 234 61.5
HPP92_022410 Vanilla planifolia HOM05D004663 ORTHO05D006325 2.9e-67 259.2 232 58.2
PSO675G5757 Papaver somniferum HOM05D004663 ORTHO05D006325 3.8e-67 258.8 224 60.3
RcHm_v2.0_Chr4g0446361 Rosa chinensis HOM05D004663 ORTHO05D006325 3.8e-67 258.8 231 61.5
Sp3g16700 Schrenkiella parvula HOM05D004663 ORTHO05D006325 3.8e-67 258.8 235 61.7
CiPaw.06G057700 Carya illinoinensis HOM05D004663 ORTHO05D006325 4.9e-67 258.5 232 61.2
Rhsim05G0224300 Rhododendron simsii HOM05D004663 ORTHO05D006325 6.4e-67 258.1 226 58.4
A05p30980 Brassica napus HOM05D004663 ORTHO05D006325 1.1e-66 257.3 227 61.2
CARHR094010 Cardamine hirsuta HOM05D004663 ORTHO05D006325 1.1e-66 257.3 234 60.3
Haze_11737 Corylus avellana HOM05D004663 ORTHO05D006325 1.4e-66 256.9 230 61.3
Sabra10G0129400 Salix brachista HOM05D004663 ORTHO05D006325 4.2e-66 255.4 225 60.0
ECA233G5178 Erigeron canadensis HOM05D004663 ORTHO05D006325 5.4e-66 255.0 183 68.9
Lsat_1_v5_gn_8_32481 Lactuca sativa HOM05D004663 ORTHO05D006325 5.4e-66 255.0 188 67.6
Ah.01g013090 Amaranthus hybridus HOM05D004663 ORTHO05D006325 9.3e-66 254.2 227 58.6
BcaC05g28590 Brassica carinata HOM05D004663 ORTHO05D006325 1.2e-65 253.8 229 62.0
C05p46970 Brassica napus HOM05D004663 ORTHO05D006325 1.2e-65 253.8 229 62.0
BolC5t33426H Brassica oleracea HOM05D004663 ORTHO05D006325 1.2e-65 253.8 229 62.0
BraA05t21940Z Brassica rapa HOM05D004663 ORTHO05D006325 1.6e-65 253.4 233 59.2
FAN12G1833 Fragaria x ananassa HOM05D004663 ORTHO05D006325 1.6e-65 253.4 228 58.8
Peaxi162Scf00818g00118 Petunia axillaris HOM05D004663 ORTHO05D006325 1.6e-65 253.4 221 63.3
FvH4_4g36650 Fragaria vesca HOM05D004663 ORTHO05D006325 2.1e-65 253.1 228 58.8
unitig_22.g6361 Utricularia gibba HOM05D004663 ORTHO05D006325 2.7e-65 252.7 164 73.2
ATR0618G342 Amborella trichopoda HOM05D004663 ORTHO05D006325 3.5e-65 252.3 222 60.4
ClCG11G001190 Citrullus lanatus HOM05D004663 ORTHO05D006325 3.5e-65 252.3 225 60.0
FAN07G1521 Fragaria x ananassa HOM05D004663 ORTHO05D006325 3.5e-65 252.3 228 58.8
HanXRQChr13g0388091 Helianthus annuus HOM05D004663 ORTHO05D006325 4.6e-65 251.9 177 68.4
CsaV3_5G013250 Cucumis sativus L. HOM05D004663 ORTHO05D006325 6.0e-65 251.5 226 60.6
Ca_03037_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 1.0e-64 250.8 203 62.1
MELO3C026796.2 Cucumis melo HOM05D004663 ORTHO05D006325 1.7e-64 250.0 226 59.7
TAR629G1859 Trochodendron aralioides HOM05D004663 ORTHO05D006325 2.3e-64 249.6 219 60.7
BcaC09g48820 Brassica carinata HOM05D004663 ORTHO05D006325 5.1e-64 248.4 227 61.7
C01p45610 Brassica napus HOM05D004663 ORTHO05D006325 5.1e-64 248.4 227 61.7
BolC1t04522H Brassica oleracea HOM05D004663 ORTHO05D006325 5.1e-64 248.4 227 61.7
TPR.G21555 Trifolium pratense HOM05D004663 ORTHO05D006325 6.6e-64 248.1 205 64.4
Sed0002621 Sechium edule HOM05D004663 ORTHO05D006325 1.5e-63 246.9 179 67.0
EL10Ac9g22902 Beta vulgaris HOM05D004663 ORTHO05D006325 9.6e-63 244.2 166 69.9
Psat7g174040 Pisum sativum HOM05D004663 ORTHO05D006325 9.6e-63 244.2 226 57.1
PGR142G1504 Punica granatum HOM05D004663 ORTHO05D006325 9.6e-63 244.2 205 62.4
Medtr4g074330 Medicago truncatula HOM05D004663 ORTHO05D006325 6.2e-62 241.5 227 58.6
SHI04172 Sapria himalayana HOM05D004663 ORTHO05D006325 1.4e-61 240.4 223 57.8
AUR62017645 Chenopodium quinoa HOM05D004663 ORTHO05D006325 2.0e-60 236.5 206 60.2
AUR62012865 Chenopodium quinoa HOM05D004663 ORTHO05D006325 9.9e-60 234.2 196 61.2
Lalb_Chr03g0024891 Lupinus albus HOM05D004663 ORTHO05D006325 2.2e-59 233.0 225 57.3
SalBow2G2230 Salvia bowleyana HOM05D004663 ORTHO05D006325 6.4e-59 231.5 137 79.6
CANSAT35G0206 Cannabis sativa HOM05D004663 ORTHO05D006325 1.1e-58 230.7 180 65.0
CDE05G3445 Ceratophyllum demersum HOM05D004663 ORTHO05D006325 1.4e-58 230.3 206 58.7
Zm00001eb066560 Zea mays HOM05D004663 ORTHO05D006325 5.4e-58 228.4 191 60.7
SEGI_04236 Sequoiadendron giganteum HOM05D004663 ORTHO05D006325 9.3e-58 227.6 185 60.0
HPP92_027507 Vanilla planifolia HOM05D004663 ORTHO05D006325 1.2e-57 227.3 137 76.6
Lj3C851G4 Lonicera japonica HOM05D005588 ORTHO05D006615 2.7e-57 226.1 136 78.7
BraA01t03662Z Brassica rapa HOM05D004663 ORTHO05D006325 8.7e-56 221.1 202 60.4
Os04g0673400 Oryza sativa ssp. japonica HOM05D004663 ORTHO05D006325 1.1e-55 220.7 153 69.3
Pp3c14_15380 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.8e-54 215.3 191 58.1
Medtr4g074300 Medicago truncatula HOM05D004663 ORTHO05D006325 1.4e-53 213.8 187 56.7
A01p35830 Brassica napus HOM05D004663 ORTHO05D006325 4.5e-52 208.8 201 57.7
AagrBONN_evm.TU.Sc2ySwM_344.3482 Anthoceros agrestis HOM05D004663 ORTHO05D006325 5.8e-52 208.4 178 57.3
Mapoly0028s0106 Marchantia polymorpha HOM05D004663 ORTHO05D006325 5.8e-52 208.4 173 58.4
SMO087G0003 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.8e-52 208.4 173 56.6
SMO361G0720 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 5.8e-52 208.4 173 56.6
SMO361G0033 Selaginella moellendorffii HOM05D004663 ORTHO05D006325 1.3e-51 207.2 173 56.6
Medtr4g074280 Medicago truncatula HOM05D004663 ORTHO05D006325 6.9e-45 184.9 157 56.7
MD03G1100100 Malus domestica HOM05D004663 ORTHO05D006325 9.3e-42 174.5 135 63.7
CBR_g10874 Chara braunii HOM05D004663 ORTHO05D006325 5.1e-40 168.7 136 57.4
MCO16G090 Micromonas commoda HOM05D004663 ORTHO05D006325 9.0e-37 157.9 130 57.7
Lju1225C2G8 Lonicera japonica HOM05D004663 ORTHO05D006325 7.2e-34 148.3 97 76.3
Oeu044073.1 Olea europaea HOM05D000222 ORTHO05D004962 3.5e-33 146.0 226 42.5
PRCOL_00002421 Prasinoderma coloniale HOM05D001829 ORTHO05D007093 6.7e-32 141.7 130 54.6
Lj9C88T6 Lonicera japonica HOM05D004663 ORTHO05D006325 1.1e-29 134.4 88 73.9
Ca_29479_v3 Cicer arietinum L. HOM05D004663 ORTHO05D006325 2.4e-29 133.3 123 54.5
Lju1225A1T39 Lonicera japonica HOM05D004663 ORTHO05D006325 5.9e-28 128.6 92 67.4
Cre17.g746347 Chlamydomonas reinhardtii HOM05D004663 ORTHO05D006325 3.2e-26 122.9 206 38.8
Haze_26212 Corylus avellana HOM05D004663 ORTHO05D006325 2.8e-22 109.8 124 46.0
Glyma.08G121000 Glycine max HOM05D004663 ORTHO05D006325 7.7e-20 101.7 54 81.5
Pp3c9_12680 Physcomitrium patens HOM05D004663 ORTHO05D012250 2.9e-19 99.8 100 49.0
Pp3c16_10730 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.8e-19 99.4 102 49.0
Pp3c15_19430 Physcomitrium patens HOM05D004663 ORTHO05D006325 5.0e-19 99.0 100 48.0
Pp3c16_6060 Physcomitrium patens HOM05D004663 ORTHO05D012250 5.0e-19 99.0 97 49.5
Pp3c16_12590 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.5e-18 96.7 100 48.0
Pp3c1_280 Physcomitrium patens HOM05D004663 ORTHO05D006325 3.2e-18 96.3 100 47.0
CBR_g4801 Chara braunii HOM05D004663 ORTHO05D134352 1.6e-17 94.0 106 46.2
Pp3s67_100 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.5e-15 87.4 92 48.9
Pp3c10_11550 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-15 85.9 87 46.0
Pp3c11_15750 Physcomitrium patens HOM05D004663 ORTHO05D006325 4.4e-15 85.9 100 41.0
Pp3c8_4630 Physcomitrium patens HOM05D004663 ORTHO05D311796 5.5e-10 68.9 83 39.8
Lalb_Chr01g0001561 Lupinus albus HOM05D004663 ORTHO05D006325 3.6e-09 66.2 67 52.2
Medtr3g063510 Medicago truncatula HOM05D004663 ORTHO05D006325 4.7e-09 65.9 60 56.7
Pp3c14_3990 Physcomitrium patens HOM05D004663 ORTHO05D006325 1.4e-08 64.3 78 38.5
Pp3c14_4000 Physcomitrium patens HOM05D004663 ORTHO05D012250 1.4e-08 64.3 78 38.5
Pp3c4_24930 Physcomitrium patens HOM05D004663 ORTHO05D006325 2.3e-08 63.5 101 36.6
Pp3c6_15710 Physcomitrium patens HOM05D004663 ORTHO05D313664 1.5e-07 60.8 93 36.6
Medtr4g074270 Medicago truncatula HOM05D004663 ORTHO05D006325 3.3e-07 59.7 68 51.5
AUR62002800 Chenopodium quinoa HOM05D004663 ORTHO05D006325 4.4e-07 59.3 32 71.9


User provided reference genes

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