Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ciclev10002002m.g Citrus clementina HOM05D005614 ORTHO05D006759 1.8e-170 602.4 299 100.0
Atru.chr13.1437_Atru.chr13.1438 Acer truncatum HOM05D005614 ORTHO05D006759 1.7e-147 526.2 299 88.3
Gohir.A05G234600 Gossypium hirsutum HOM05D005614 ORTHO05D006759 8.6e-144 513.8 299 85.3
Thecc.08G123600 Theobroma cacao HOM05D005614 ORTHO05D006759 1.9e-143 512.7 299 84.9
Gorai.009G245300 Gossypium raimondii HOM05D005614 ORTHO05D006759 1.8e-141 506.1 299 84.3
TWI79G0333 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 5.4e-138 494.6 299 81.9
Cpa.g.sc36.54 Carica papaya HOM05D005614 ORTHO05D006759 2.7e-137 492.3 299 81.3
THA.LOC104806819 Tarenaya hassleriana HOM05D005614 ORTHO05D006759 7.3e-135 484.2 298 78.9
GSVIVG01008884001 Vitis vinifera HOM05D005614 ORTHO05D006759 4.9e-131 471.5 300 79.0
Prupe.1G500100 Prunus persica HOM05D005614 ORTHO05D006759 5.4e-130 468.0 299 79.3
Potri.005G176600 Populus trichocarpa HOM05D005614 ORTHO05D006759 7.1e-130 467.6 301 78.7
PGR042G1492 Punica granatum HOM05D005614 ORTHO05D006759 7.1e-130 467.6 299 77.9
Aa31LG6G9300 Aethionema arabicum HOM05D005614 ORTHO05D006759 1.6e-129 466.5 299 76.9
Thhalv10008316m.g Eutrema salsugineum HOM05D005614 ORTHO05D006759 1.6e-129 466.5 303 77.9
CARHR138110 Cardamine hirsuta HOM05D005614 ORTHO05D006759 3.5e-129 465.3 302 77.5
QL09p035347 Quercus lobata HOM05D005614 ORTHO05D006759 4.6e-129 464.9 301 76.1
Sp1g16310 Schrenkiella parvula HOM05D005614 ORTHO05D006759 2.3e-128 462.6 302 77.2
CiPaw.05G223000 Carya illinoinensis HOM05D005614 ORTHO05D006759 3.9e-128 461.8 292 78.1
CANSAT54G1242 Cannabis sativa HOM05D005614 ORTHO05D006759 6.6e-128 461.1 297 77.4
MD15G1351400 Malus domestica HOM05D005614 ORTHO05D006759 6.6e-128 461.1 300 78.3
RcHm_v2.0_Chr6g0295621 Rosa chinensis HOM05D005614 ORTHO05D006759 6.6e-128 461.1 299 76.9
Sed0025863 Sechium edule HOM05D005614 ORTHO05D006759 1.1e-127 460.3 299 75.9
BcaB07g31845 Brassica carinata HOM05D005614 ORTHO05D006759 5.6e-127 458.0 302 75.5
FvH4_2g26720 Fragaria vesca HOM05D005614 ORTHO05D006759 2.1e-126 456.1 297 76.8
Dinv07241 Davidia involucrata HOM05D005614 ORTHO05D006759 2.8e-126 455.7 301 78.4
Sc01g0001200 Simmondsia chinensis HOM05D005614 ORTHO05D006759 2.8e-126 455.7 314 73.2
BcaB03g12976 Brassica carinata HOM05D005614 ORTHO05D006759 4.7e-126 454.9 303 74.6
AT1G18340 Arabidopsis thaliana HOM05D005614 ORTHO05D006759 1.1e-125 453.8 299 75.9
AL1G30720 Arabidopsis lyrata HOM05D005614 ORTHO05D006759 3.1e-125 452.2 299 75.6
CsaV3_2G009350 Cucumis sativus L. HOM05D005614 ORTHO05D006759 3.1e-125 452.2 273 80.2
C05p16610 Brassica napus HOM05D005614 ORTHO05D006759 4.0e-125 451.8 302 75.2
BraA06t24565Z Brassica rapa HOM05D005614 ORTHO05D006759 4.0e-125 451.8 302 74.5
A06p14370 Brassica napus HOM05D005614 ORTHO05D006759 9.0e-125 450.7 302 74.8
BolC5t30360H Brassica oleracea HOM05D005614 ORTHO05D006759 1.5e-124 449.9 302 75.2
CARHR018930 Cardamine hirsuta HOM05D005614 ORTHO05D006759 2.6e-124 449.1 300 75.7
PSO782G2082 Papaver somniferum HOM05D005614 ORTHO05D006759 2.6e-124 449.1 303 74.3
BolC8t49486H Brassica oleracea HOM05D005614 ORTHO05D006759 5.8e-124 448.0 305 74.1
PSO170G2981 Papaver somniferum HOM05D005614 ORTHO05D006759 7.6e-124 447.6 303 73.6
BcaC05g25728 Brassica carinata HOM05D005614 ORTHO05D006759 2.2e-123 446.0 304 74.0
Carub.0001s1797 Capsella rubella HOM05D005614 ORTHO05D006759 2.9e-123 445.7 298 75.2
Actinidia03480 Actinidia chinensis HOM05D005614 ORTHO05D006759 8.4e-123 444.1 302 75.8
ClCG08G005590 Citrullus lanatus HOM05D005614 ORTHO05D006759 1.9e-122 443.0 334 68.3
CSS0036035 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.4e-122 442.6 302 76.2
Duzib041G0760 Durio zibethinus HOM05D005614 ORTHO05D006759 5.4e-122 441.4 299 75.3
BraA08t34975Z Brassica rapa HOM05D005614 ORTHO05D006759 9.3e-122 440.7 298 73.2
TAR628G1424 Trochodendron aralioides HOM05D005614 ORTHO05D006759 1.2e-121 440.3 299 74.9
Sed0022578 Sechium edule HOM05D005614 ORTHO05D006759 6.0e-121 438.0 311 71.4
A08p30430 Brassica napus HOM05D005614 ORTHO05D006759 2.3e-120 436.0 295 73.2
C08p18540 Brassica napus HOM05D005614 ORTHO05D006759 3.0e-120 435.6 295 73.6
CSS0020697 Camellia sinensis var. sinensis HOM05D005614 ORTHO05D006759 2.5e-119 432.6 303 75.2
RhsimUnG0093400 Rhododendron simsii HOM05D005614 ORTHO05D006759 4.3e-119 431.8 302 74.2
COL.COLO4_35944 Corchorus olitorius HOM05D005614 ORTHO05D006759 7.3e-119 431.0 259 82.2
Lj1g0021555 Lotus japonicus HOM05D005614 ORTHO05D006759 1.6e-118 429.9 295 73.2
Ca_15193_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 6.2e-118 427.9 296 70.9
Lalb_Chr23g0270981 Lupinus albus HOM05D005614 ORTHO05D006759 8.1e-118 427.6 296 72.3
Aqoxy7G02121 Aquilegia oxysepala HOM05D005614 ORTHO05D006759 5.3e-117 424.9 307 71.3
Medtr3g072430 Medicago truncatula HOM05D005614 ORTHO05D006759 1.2e-116 423.7 293 71.7
FAN15G2492 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.5e-116 423.3 318 69.5
Migut.D01926 Erythranthe guttata HOM05D005614 ORTHO05D006759 4.5e-116 421.8 298 72.8
Phvul.009G124300 Phaseolus vulgaris HOM05D005614 ORTHO05D006759 7.6e-116 421.0 294 70.4
CAN.G628.77 Capsicum annuum HOM05D005614 ORTHO05D006759 1.7e-115 419.9 297 70.7
FAN27G1664 Fragaria x ananassa HOM05D005614 ORTHO05D006759 2.9e-115 419.1 318 68.6
SalBow3G0912 Salvia bowleyana HOM05D005614 ORTHO05D006759 3.8e-115 418.7 297 72.1
arahy.Tifrunner.gnm1.ann1.2VS3GS Arachis hypogaea HOM05D005614 ORTHO05D006759 1.1e-114 417.2 323 67.5
Glyma.04G250400 Glycine max HOM05D005614 ORTHO05D006759 1.4e-114 416.8 296 70.6
arahy.Tifrunner.gnm1.ann1.MKV7IN Arachis hypogaea HOM05D005614 ORTHO05D006759 2.4e-114 416.0 323 67.5
PGSC0003DMG400026996 Solanum tuberosum HOM05D005614 ORTHO05D006759 4.2e-114 415.2 296 69.6
Solyc06g071450.4 Solanum lycopersicum HOM05D005614 ORTHO05D006759 9.3e-114 414.1 296 69.3
FAN20G0890 Fragaria x ananassa HOM05D005614 ORTHO05D006759 1.2e-113 413.7 273 74.7
Glyma.06G112400 Glycine max HOM05D005614 ORTHO05D006759 1.6e-113 413.3 296 69.9
Cc04_g13870 Coffea canephora HOM05D005614 ORTHO05D006759 3.5e-113 412.1 292 71.9
HanXRQChr16g0532671 Helianthus annuus HOM05D005614 ORTHO05D006759 3.5e-113 412.1 296 71.6
Rhsim11G0047100 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.0e-112 410.6 279 74.9
Sopen06g027730 Solanum pennellii HOM05D005614 ORTHO05D006759 1.3e-112 410.2 296 68.6
Duzib093G1836 Durio zibethinus HOM05D005614 ORTHO05D006759 1.8e-112 409.8 326 68.1
Oeu024691.1 Olea europaea HOM05D005614 ORTHO05D006759 1.8e-112 409.8 282 73.8
HanXRQChr02g0053121 Helianthus annuus HOM05D005614 ORTHO05D006759 2.3e-112 409.5 296 70.3
ECA246G0276 Erigeron canadensis HOM05D005614 ORTHO05D006759 3.0e-112 409.1 301 70.1
Nitab4.5_0000866g0090 Nicotiana tabacum HOM05D005614 ORTHO05D006759 5.1e-112 408.3 320 66.2
vmacro14329 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 3.3e-111 405.6 283 74.6
DCAR_017415 Daucus carota HOM05D005614 ORTHO05D006759 1.8e-109 399.8 301 69.4
Manes.02G162200 Manihot esculenta HOM05D005614 ORTHO05D006759 4.0e-109 398.7 241 81.3
HPP92_013333 Vanilla planifolia HOM05D005614 ORTHO05D006759 6.4e-107 391.3 307 64.2
Nitab4.5_0001017g0060 Nicotiana tabacum HOM05D005614 ORTHO05D006759 3.2e-106 389.0 296 67.6
ATR0684G165 Amborella trichopoda HOM05D005614 ORTHO05D006759 4.8e-102 375.2 276 67.4
Os02g0125800 Oryza sativa ssp. japonica HOM05D005614 ORTHO05D006759 1.1e-98 364.0 278 64.0
Gohir.D05G236900 Gossypium hirsutum HOM05D005614 ORTHO05D006759 1.4e-98 363.6 214 81.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 7.1e-98 361.3 248 71.0
EL10Ac1g01047 Beta vulgaris HOM05D005614 ORTHO05D006759 6.0e-97 358.2 252 71.8
Zm00001eb208710 Zea mays HOM05D005614 ORTHO05D006759 6.0e-97 358.2 284 63.4
Hund27024 Selenicereus undatus HOM05D005614 ORTHO05D006759 1.3e-96 357.1 246 72.8
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 5.3e-93 345.1 247 70.0
Lsat_1_v5_gn_3_69700 Lactuca sativa HOM05D005614 ORTHO05D006759 5.9e-92 341.7 241 73.0
MELO3C008774.2 Cucumis melo HOM05D005614 ORTHO05D006759 2.5e-90 336.3 213 77.5
Nn8g39974 Nelumbo nucifera HOM05D005614 ORTHO05D006759 2.7e-89 332.8 228 75.9
Eucgr.G01112 Eucalyptus grandis HOM05D005614 ORTHO05D006759 3.9e-88 328.9 214 76.2
SalBow7G1071 Salvia bowleyana HOM05D005614 ORTHO05D006759 1.9e-87 326.6 243 69.5
BcaNung05442 Brassica carinata HOM05D005614 ORTHO05D006759 4.3e-87 325.5 221 73.8
Pp3c2_3680 Physcomitrium patens HOM05D005614 ORTHO05D006759 6.3e-86 321.6 303 53.5
Mapoly0044s0012 Marchantia polymorpha HOM05D005614 ORTHO05D006759 2.5e-82 309.7 301 51.8
Sabra05G0133300 Salix brachista HOM05D005614 ORTHO05D006759 1.7e-78 297.0 288 57.6
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 1.1e-77 294.3 248 61.3
FAN24G3468 Fragaria x ananassa HOM05D005614 ORTHO05D006759 3.1e-77 292.7 437 44.6
SGA_v2.0_scaffold31G12915 Striga asiatica HOM05D005614 ORTHO05D006759 2.7e-73 279.6 219 67.6
Nitab4.5_0000003g0570 Nicotiana tabacum HOM05D005614 ORTHO05D006759 8.8e-72 274.6 237 62.4
MBI03_g33030_MAGBIO Magnolia biondii HOM05D005614 ORTHO05D006759 9.7e-71 271.2 252 59.5
CBR_g36358 Chara braunii HOM05D005614 ORTHO05D006759 6.3e-70 268.5 313 46.6
Haze_00457 Corylus avellana HOM05D005614 ORTHO05D006759 3.1e-69 266.2 182 74.2
CDE06G0499 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 1.9e-66 256.9 183 69.9
Oeu022164.1 Olea europaea HOM05D005614 ORTHO05D006759 1.9e-66 256.9 149 81.9
Peaxi162Scf00689g00225 Petunia axillaris HOM05D005614 ORTHO05D006759 1.2e-63 247.7 220 59.5
TWI75G0111 Tripterygium wilfordii HOM05D005614 ORTHO05D006759 6.3e-62 241.9 200 66.0
vmacro00825 Vaccinium macrocarpon HOM05D005614 ORTHO05D006759 1.8e-61 240.4 231 61.5
TPR.G24041 Trifolium pratense HOM05D005614 ORTHO05D006759 4.5e-60 235.7 175 69.1
Psat5g132360 Pisum sativum HOM05D005614 ORTHO05D006759 2.2e-54 216.9 161 68.9
TPR.G40310 Trifolium pratense HOM05D001808 ORTHO05D001747 8.9e-48 194.9 111 77.5
CDE12G0551 Ceratophyllum demersum HOM05D005614 ORTHO05D006759 8.3e-46 188.3 136 70.6
Psat5g132400 Pisum sativum HOM05D005614 ORTHO05D006759 4.5e-44 182.6 123 70.7
Lj4A622G15 Lonicera japonica HOM05D005614 ORTHO05D006759 1.2e-41 174.5 95 87.4
SEGI_11087 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 6.4e-38 162.2 102 73.5
Cre03.g172050 Chlamydomonas reinhardtii HOM05D005614 ORTHO05D006759 1.2e-36 157.9 285 36.5
Lj4A622G16 Lonicera japonica HOM05D005614 ORTHO05D006759 1.6e-33 147.5 122 66.4
MCO01G384 Micromonas commoda HOM05D005614 ORTHO05D006759 5.2e-32 142.5 254 35.4
SEGI_10746 Sequoiadendron giganteum HOM05D005614 ORTHO05D006759 6.8e-32 142.1 152 52.6
Haze_00458 Corylus avellana HOM05D005614 ORTHO05D006759 7.5e-31 138.7 87 75.9
Cfa025530 Carpinus fangiana HOM05D005614 ORTHO05D006759 2.7e-28 130.2 339 31.3
QL09p036498 Quercus lobata HOM05D005614 ORTHO05D006759 6.0e-28 129.0 69 87.0
SMO358G0086 Selaginella moellendorffii HOM05D005614 ORTHO05D006759 6.0e-28 129.0 157 47.1
PRCOL_00005856 Prasinoderma coloniale HOM05D005614 ORTHO05D006759 1.9e-26 124.0 138 43.5
Ca_31116_v3 Cicer arietinum L. HOM05D005614 ORTHO05D006759 4.6e-20 102.8 92 59.8
CAN.G964.16 Capsicum annuum HOM05D005614 ORTHO05D006759 3.3e-18 96.7 105 52.4
RhsimUnG0102200 Rhododendron simsii HOM05D005614 ORTHO05D006759 2.9e-14 83.6 88 55.7
Rhsim02G0185400 Rhododendron simsii HOM05D005614 ORTHO05D006759 7.1e-13 79.0 85 58.8
Cfa016005 Carpinus fangiana HOM05D005614 ORTHO05D006759 1.3e-09 68.2 53 64.2
Rhsim03G0117800 Rhododendron simsii HOM05D005614 ORTHO05D006759 1.1e-08 65.1 54 61.1
TPR.G32 Trifolium pratense HOM05D005614 ORTHO05D006759 1.4e-08 64.7 31 80.6


User provided reference genes

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