Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.16G003100 Carya illinoinensis HOM05D004199 ORTHO05D005905 0.0e+00 1597.0 931 100.0
Cfa018630 Carpinus fangiana HOM05D004199 ORTHO05D005905 0.0e+00 1271.9 857 80.7
Haze_17439 Corylus avellana HOM05D004199 ORTHO05D005905 0.0e+00 1208.4 857 78.4
Manes.04G160500 Manihot esculenta HOM05D004199 ORTHO05D005905 1.1e-309 1066.6 876 68.9
CSS0043668 Camellia sinensis var. sinensis HOM05D004199 ORTHO05D005905 1.9e-306 1055.8 866 68.8
MD13G1046700 Malus domestica HOM05D004199 ORTHO05D005905 4.4e-303 1044.6 865 68.6
TAR623G0314 Trochodendron aralioides HOM05D004199 ORTHO05D005905 2.8e-302 1042.0 867 68.6
Eucgr.G02350 Eucalyptus grandis HOM05D004199 ORTHO05D005905 5.3e-301 1037.7 891 68.0
MELO3C012214.2 Cucumis melo HOM05D004199 ORTHO05D005905 4.5e-300 1034.6 870 67.4
Eucgr.K00868 Eucalyptus grandis HOM05D004199 ORTHO05D005905 5.9e-300 1034.2 884 67.5
CsaV3_5G033970 Cucumis sativus L. HOM05D004199 ORTHO05D005905 1.0e-299 1033.5 873 66.9
Sed0023765 Sechium edule HOM05D004199 ORTHO05D005905 1.1e-298 1030.0 866 66.6
MD16G1048400 Malus domestica HOM05D004199 ORTHO05D005905 5.5e-298 1027.7 869 67.5
RcHm_v2.0_Chr4g0435851 Rosa chinensis HOM05D004199 ORTHO05D005905 1.2e-297 1026.5 867 67.8
ClCG05G023030 Citrullus lanatus HOM05D004199 ORTHO05D005905 2.8e-294 1015.4 848 67.1
Hma1.2p1_0399F.1_g144220 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 6.3e-294 1014.2 869 66.7
FAN22G1977 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.0e-292 1009.2 863 66.3
CANSAT56G2350 Cannabis sativa HOM05D004199 ORTHO05D005905 2.7e-292 1008.8 880 66.2
Dinv05796 Davidia involucrata HOM05D004199 ORTHO05D005905 5.0e-291 1004.6 864 66.4
FvH4_4g28100 Fragaria vesca HOM05D004199 ORTHO05D005905 7.2e-290 1000.7 866 65.7
Lj6A766T32 Lonicera japonica HOM05D004199 ORTHO05D005905 7.2e-290 1000.7 866 65.7
Atru.chr6.1864_Atru.chr6.1865 Acer truncatum HOM05D004199 ORTHO05D005905 1.6e-289 999.6 848 67.8
FAN12G0509 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.1e-289 999.2 863 65.8
FAN07G1167 Fragaria x ananassa HOM05D004199 ORTHO05D005905 2.3e-288 995.7 862 65.0
FAN17G3109 Fragaria x ananassa HOM05D004199 ORTHO05D005905 5.2e-288 994.6 863 65.1
COL.COLO4_31201 Corchorus olitorius HOM05D004199 ORTHO05D005905 6.8e-288 994.2 871 66.4
TWI53G1601 Tripterygium wilfordii HOM05D004199 ORTHO05D005905 9.8e-287 990.3 848 66.3
Hma1.2p1_2265F.1_g318400 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.7e-286 989.6 864 65.5
Nn6g35106 Nelumbo nucifera HOM05D004199 ORTHO05D005905 1.5e-282 976.5 883 65.5
vmacro14411 Vaccinium macrocarpon HOM05D004199 ORTHO05D005905 2.8e-281 972.2 858 64.0
Gohir.D10G059300 Gossypium hirsutum HOM05D004199 ORTHO05D005905 2.0e-279 966.1 874 64.2
Gorai.011G063300 Gossypium raimondii HOM05D004199 ORTHO05D005905 2.0e-279 966.1 875 64.1
Gohir.A10G057500 Gossypium hirsutum HOM05D004199 ORTHO05D005905 4.4e-279 964.9 874 64.2
DCAR_030084 Daucus carota HOM05D004199 ORTHO05D005905 7.5e-279 964.1 853 64.2
Ciclev10014191m.g Citrus clementina HOM05D004199 ORTHO05D005905 3.2e-277 958.7 862 64.5
MBI01_g12859_MAGBIO Magnolia biondii HOM05D004199 ORTHO05D005905 9.2e-277 957.2 864 63.9
Potri.008G002600 Populus trichocarpa HOM05D004199 ORTHO05D005905 2.8e-273 945.7 896 62.4
EL10Ac9g22638 Beta vulgaris HOM05D004199 ORTHO05D005905 8.0e-273 944.1 870 62.2
Thecc.10G125100 Theobroma cacao HOM05D004199 ORTHO05D005905 2.3e-272 942.6 880 64.2
Prupe.1G305200 Prunus persica HOM05D004199 ORTHO05D005905 8.3e-270 934.1 866 64.1
Rhsim03G0238800 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.2e-268 930.2 954 57.2
Cc11_g10620 Coffea canephora HOM05D004199 ORTHO05D005905 2.0e-268 929.5 883 62.4
Psat2g189000 Pisum sativum HOM05D004199 ORTHO05D005905 2.5e-266 922.5 877 62.3
Sabra08G0000600 Salix brachista HOM05D004199 ORTHO05D005905 3.6e-265 918.7 923 60.3
AUR62044199 Chenopodium quinoa HOM05D004199 ORTHO05D005905 1.4e-261 906.7 868 60.5
Ah.04g153070 Amaranthus hybridus HOM05D004199 ORTHO05D005905 4.1e-261 905.2 872 60.1
Ca_25946_v3 Cicer arietinum L. HOM05D004199 ORTHO05D005905 5.4e-261 904.8 877 61.5
Aqoxy2G01512 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 7.1e-261 904.4 875 60.2
SGA_v2.0_scaffold14G06820 Striga asiatica HOM05D004199 ORTHO05D005905 2.5e-258 896.0 880 58.5
Sc17g0004690 Simmondsia chinensis HOM05D004199 ORTHO05D005905 9.5e-258 894.0 822 63.0
Hma1.2p1_0592F.1_g185323 Hydrangea macrophylla HOM05D004199 ORTHO05D005905 1.1e-256 890.6 799 64.2
Peaxi162Scf00102g00927 Petunia axillaris HOM05D004199 ORTHO05D005905 1.8e-256 889.8 873 59.1
VMungo1383G0908 Vigna mungo HOM05D004199 ORTHO05D005905 1.8e-256 889.8 872 60.6
THA.LOC104800384 Tarenaya hassleriana HOM05D004199 ORTHO05D005905 3.1e-256 889.0 865 59.0
Phvul.001G030200 Phaseolus vulgaris HOM05D004199 ORTHO05D005905 6.8e-256 887.9 861 61.4
PSO339G4136 Papaver somniferum HOM05D004199 ORTHO05D005905 4.4e-255 885.2 861 59.6
CAN.G184.89 Capsicum annuum HOM05D004199 ORTHO05D005905 9.9e-255 884.0 864 58.8
Duzib235G0865 Durio zibethinus HOM05D004199 ORTHO05D005905 2.2e-254 882.9 881 61.4
EL10Ac8g19592 Beta vulgaris HOM05D004199 ORTHO05D005905 3.7e-254 882.1 874 59.3
Glyma.07G227400 Glycine max HOM05D004199 ORTHO05D005905 1.1e-253 880.6 873 60.3
Sopen05g005660 Solanum pennellii HOM05D004199 ORTHO05D005905 1.9e-253 879.8 877 58.2
Lj3g0002767 Lotus japonicus HOM05D004199 ORTHO05D005905 5.4e-253 878.2 875 59.4
ATR0665G261 Amborella trichopoda HOM05D004199 ORTHO05D005905 3.5e-252 875.5 868 58.5
Glyma.20G028100 Glycine max HOM05D004199 ORTHO05D005905 3.5e-252 875.5 872 60.9
Aa31LG3G17980 Aethionema arabicum HOM05D004199 ORTHO05D005905 3.9e-251 872.1 869 57.5
PGSC0003DMG400000826 Solanum tuberosum HOM05D004199 ORTHO05D005905 8.6e-251 870.9 875 57.7
ECA234G0057 Erigeron canadensis HOM05D004199 ORTHO05D005905 1.1e-250 870.5 867 59.5
Glyma.07G155300 Glycine max HOM05D004199 ORTHO05D005905 1.9e-250 869.8 874 60.3
PSO801G0529 Papaver somniferum HOM05D004199 ORTHO05D005905 4.3e-250 868.6 861 58.0
Lalb_Chr10g0099721 Lupinus albus HOM05D004199 ORTHO05D005905 5.6e-250 868.2 869 60.1
Medtr5g007520 Medicago truncatula HOM05D004199 ORTHO05D005905 2.1e-249 866.3 855 59.8
Nitab4.5_0004122g0060 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.4e-248 862.8 941 54.7
Lsat_1_v5_gn_4_1641 Lactuca sativa HOM05D004199 ORTHO05D005905 5.8e-247 858.2 863 58.7
arahy.Tifrunner.gnm1.ann1.9AQU5H Arachis hypogaea HOM05D004199 ORTHO05D005905 1.7e-246 856.7 881 58.9
HanXRQChr17g0568011 Helianthus annuus HOM05D004199 ORTHO05D005905 2.2e-246 856.3 811 60.5
CDE05G0525 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 3.2e-245 852.4 853 58.9
arahy.Tifrunner.gnm1.ann1.P5TZTU Arachis hypogaea HOM05D004199 ORTHO05D005905 1.1e-242 844.0 903 57.5
CDE01G0057 Ceratophyllum demersum HOM05D004199 ORTHO05D005905 4.0e-240 835.5 810 61.0
Nitab4.5_0011513g0020 Nicotiana tabacum HOM05D004199 ORTHO05D005905 1.2e-236 823.9 919 54.3
TPR.G37944 Trifolium pratense HOM05D004199 ORTHO05D005905 1.2e-236 823.9 807 60.1
Migut.E00297 Erythranthe guttata HOM05D004199 ORTHO05D005905 2.7e-228 796.2 861 54.6
BcaB08g37246 Brassica carinata HOM05D004199 ORTHO05D005905 4.6e-228 795.4 840 54.5
Lalb_Chr04g0254951 Lupinus albus HOM05D004199 ORTHO05D005905 1.0e-227 794.3 875 56.0
HPP92_022758 Vanilla planifolia HOM05D004199 ORTHO05D005905 1.0e-227 794.3 863 54.0
CARHR204430 Cardamine hirsuta HOM05D004199 ORTHO05D005905 6.7e-227 791.6 868 53.7
Thhalv10012615m.g Eutrema salsugineum HOM05D004199 ORTHO05D005905 7.4e-226 788.1 859 54.0
SEGI_39962 Sequoiadendron giganteum HOM05D004199 ORTHO05D005905 9.6e-226 787.7 871 54.4
A03p03960 Brassica napus HOM05D004199 ORTHO05D005905 1.8e-224 783.5 857 54.6
BraA03t09739Z Brassica rapa HOM05D004199 ORTHO05D005905 2.6e-223 779.6 856 55.3
unitig_22.g6876 Utricularia gibba HOM05D004199 ORTHO05D005905 1.3e-222 777.3 887 52.5
A10p28170 Brassica napus HOM05D004199 ORTHO05D005905 1.9e-221 773.5 842 53.8
BraA10t44866Z Brassica rapa HOM05D004199 ORTHO05D005905 1.9e-221 773.5 842 53.8
BcaB01g05585 Brassica carinata HOM05D004199 ORTHO05D005905 1.8e-219 766.9 845 55.1
C09p68380 Brassica napus HOM05D004199 ORTHO05D005905 3.3e-218 762.7 842 53.7
AT5G08550 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 8.2e-217 758.1 863 52.0
BolC9t59585H Brassica oleracea HOM05D004199 ORTHO05D005905 2.6e-215 753.1 844 53.3
AL6G19260 Arabidopsis lyrata HOM05D004199 ORTHO05D005905 1.9e-213 746.9 863 52.0
C03p04430 Brassica napus HOM05D004199 ORTHO05D005905 3.5e-212 742.7 854 52.9
Aqoxy6G00799 Aquilegia oxysepala HOM05D004199 ORTHO05D005905 1.1e-210 737.6 860 51.3
Carub.0006s0751 Capsella rubella HOM05D004199 ORTHO05D005905 3.3e-210 736.1 869 50.6
BolC3t12974H Brassica oleracea HOM05D004199 ORTHO05D005905 4.8e-209 732.3 854 52.6
Actinidia38395 Actinidia chinensis HOM05D004199 ORTHO05D005905 5.3e-208 728.8 745 56.8
Sp6g34340 Schrenkiella parvula HOM05D004199 ORTHO05D005905 3.4e-207 726.1 869 51.0
Solyc05g009850.4 Solanum lycopersicum HOM05D004199 ORTHO05D005905 2.4e-200 703.4 615 61.6
Os03g0853700 Oryza sativa ssp. japonica HOM05D004199 ORTHO05D005905 1.7e-198 697.2 902 48.0
Zm00001eb064800 Zea mays HOM05D004199 ORTHO05D005905 1.4e-187 661.0 902 46.5
GSVIVG01011956001 Vitis vinifera HOM05D004199 ORTHO05D005905 1.1e-186 657.9 485 71.3
AagrBONN_evm.TU.Sc2ySwM_228.4147 Anthoceros agrestis HOM05D004199 ORTHO05D005905 5.3e-184 649.0 889 46.3
Pp3c5_20240 Physcomitrium patens HOM05D004199 ORTHO05D005905 1.3e-177 627.9 857 46.2
AagrBONN_evm.TU.Sc2ySwM_368.435 Anthoceros agrestis HOM05D004199 ORTHO05D005905 2.7e-175 620.2 889 45.2
Mapoly0131s0026 Marchantia polymorpha HOM05D004199 ORTHO05D005905 4.1e-168 596.3 874 44.6
Oeu041359.1 Olea europaea HOM05D004199 ORTHO05D005905 5.0e-166 589.3 477 64.8
AUR62042759 Chenopodium quinoa HOM05D004199 ORTHO05D005905 3.3e-165 586.6 481 65.1
SMO259G0010 Selaginella moellendorffii HOM05D004199 ORTHO05D005905 1.2e-146 525.0 859 41.3
Rhsim01G0212500 Rhododendron simsii HOM05D004199 ORTHO05D005905 1.5e-130 471.5 535 52.3
CBR_g46838 Chara braunii HOM05D004199 ORTHO05D005905 9.9e-114 415.6 871 36.7
QL01p046262 Quercus lobata HOM05D004199 ORTHO05D005905 2.9e-113 414.1 378 66.7
Nitab4.5_0007631g0010 Nicotiana tabacum HOM05D004199 ORTHO05D005905 2.0e-106 391.3 482 49.8
AT5G09210 Arabidopsis thaliana HOM05D004199 ORTHO05D005905 2.7e-95 354.4 325 56.6
GSVIVG01011955001 Vitis vinifera HOM05D004199 ORTHO05D005905 2.7e-95 354.4 368 62.2
Zm00001eb177730 Zea mays HOM05D004199 ORTHO05D005905 2.9e-89 334.3 392 49.0
Zm00001eb381810 Zea mays HOM05D004199 ORTHO05D005905 2.0e-85 321.6 402 48.3
Glyma.18G205900 Glycine max HOM05D004199 ORTHO05D005905 1.3e-81 308.9 295 57.3
Oeu041360.1 Olea europaea HOM05D004199 ORTHO05D005905 1.0e-78 299.3 397 53.7
CARHR203800 Cardamine hirsuta HOM05D004199 ORTHO05D005905 3.9e-78 297.4 262 58.8
Zm00001eb323900 Zea mays HOM05D004199 ORTHO05D005905 8.8e-78 296.2 332 51.8
AUR62033048 Chenopodium quinoa HOM05D004199 ORTHO05D005905 8.5e-73 279.6 377 53.1
Actinidia13676 Actinidia chinensis HOM05D004199 ORTHO05D005905 3.2e-64 251.1 171 71.9
Actinidia13675 Actinidia chinensis HOM05D004199 ORTHO05D005905 2.7e-63 248.1 359 51.3
MCO14G506 Micromonas commoda HOM05D004199 ORTHO05D005905 3.0e-62 244.6 671 29.4
Cre06.g269350 Chlamydomonas reinhardtii HOM05D004199 ORTHO05D005905 9.8e-61 239.6 607 29.7
EL10Ac6g14565 Beta vulgaris HOM05D004199 ORTHO05D005905 9.5e-56 223.0 168 64.9
Cpa.g.sc221.8 Carica papaya HOM05D004199 ORTHO05D005905 1.8e-51 208.8 331 48.9
Potri.006G020200 Populus trichocarpa HOM05D004199 ORTHO05D005905 1.8e-38 165.6 151 67.5
Potri.006G020400 Populus trichocarpa HOM05D004199 ORTHO05D005905 5.2e-38 164.1 151 67.5
EL10Ac6g13882 Beta vulgaris HOM05D004199 ORTHO05D005905 1.4e-30 139.4 96 66.7
Nitab4.5_0000520g0050 Nicotiana tabacum HOM05D004199 ORTHO05D005905 3.9e-25 121.3 202 40.1
Thecc.06G064500 Theobroma cacao HOM05D004199 ORTHO05D005905 3.3e-24 118.2 77 74.0
CARHR069330 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.5e-21 109.4 88 60.2
Cpa.g.sc221.6 Carica papaya HOM05D004199 ORTHO05D005905 7.6e-21 107.1 65 81.5
AagrBONN_evm.TU.Sc2ySwM_368.450 Anthoceros agrestis HOM05D004199 ORTHO05D005905 1.3e-17 96.3 86 52.3
COL.COLO4_28252 Corchorus olitorius HOM05D004199 ORTHO05D025158 1.5e-16 92.8 90 63.3
COL.COLO4_32069 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.8e-15 88.6 90 55.6
CARHR069340 Cardamine hirsuta HOM05D004199 ORTHO05D005905 1.5e-13 82.8 85 52.9
Sabra10G0198200 Salix brachista HOM05D004199 ORTHO05D349944 1.5e-13 82.8 141 46.8
CARHR147400 Cardamine hirsuta HOM05D004199 ORTHO05D005905 5.1e-09 67.8 129 33.3
COL.COLO4_08066 Corchorus olitorius HOM05D004199 ORTHO05D025158 2.1e-07 62.4 169 36.7
TPR.G37907 Trifolium pratense HOM05D004199 ORTHO05D411047 6.2e-07 60.8 57 52.6
EL10Ac5g11598 Beta vulgaris HOM05D004199 ORTHO05D088829 1.4e-06 59.7 66 51.5
Aqoxy5G02943 Aquilegia oxysepala HOM05D004199 ORTHO05D077991 9.0e-06 57.0 40 60.0


User provided reference genes

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