Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.15G042700 Carya illinoinensis HOM05D004712 ORTHO05D005306 7.4e-200 700.3 341 100.0
Dinv23416 Davidia involucrata HOM05D004712 ORTHO05D005306 1.3e-167 593.2 339 84.1
GSVIVG01035336001 Vitis vinifera HOM05D004712 ORTHO05D005306 5.4e-166 587.8 339 82.6
QL02p001773 Quercus lobata HOM05D004712 ORTHO05D005306 2.0e-165 585.9 342 84.8
Prupe.1G416100 Prunus persica HOM05D004712 ORTHO05D005306 2.9e-164 582.0 339 82.0
CSS0042817 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 8.3e-159 563.9 325 83.4
TAR624G0834 Trochodendron aralioides HOM05D004712 ORTHO05D005306 1.1e-158 563.5 337 81.0
Potri.018G058900 Populus trichocarpa HOM05D004712 ORTHO05D005306 1.4e-158 563.1 340 79.7
Haze_18228 Corylus avellana HOM05D004712 ORTHO05D005306 2.4e-158 562.4 339 82.6
Duzib168G2010 Durio zibethinus HOM05D004712 ORTHO05D005306 4.1e-158 561.6 344 79.7
Potri.006G234000 Populus trichocarpa HOM05D004712 ORTHO05D005306 4.1e-158 561.6 338 79.0
CANSAT25G2372 Cannabis sativa HOM05D004712 ORTHO05D005306 7.0e-158 560.8 339 78.5
Ciclev10008867m.g Citrus clementina HOM05D004712 ORTHO05D005306 1.2e-157 560.1 337 79.5
Thecc.09G050100 Theobroma cacao HOM05D004712 ORTHO05D005306 3.5e-157 558.5 341 80.1
COL.COLO4_21017 Corchorus olitorius HOM05D004712 ORTHO05D005306 1.0e-156 557.0 321 82.2
MD08G1074400 Malus domestica HOM05D004712 ORTHO05D005306 1.3e-156 556.6 339 79.4
Nn6g35377 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.3e-156 556.6 337 79.5
Atru.chr7.2032 Acer truncatum HOM05D004712 ORTHO05D005306 2.3e-156 555.8 319 82.8
ClCG08G016850 Citrullus lanatus HOM05D004712 ORTHO05D005306 8.6e-156 553.9 339 76.4
CsaV3_2G025770 Cucumis sativus L. HOM05D004712 ORTHO05D005306 1.5e-155 553.1 339 76.4
Manes.03G046000 Manihot esculenta HOM05D004712 ORTHO05D005306 3.3e-155 552.0 343 78.1
Gohir.D05G046000 Gossypium hirsutum HOM05D004712 ORTHO05D005306 5.6e-155 551.2 341 78.6
Sabra06G0182200 Salix brachista HOM05D004712 ORTHO05D005306 5.6e-155 551.2 339 78.8
Cfa017921 Carpinus fangiana HOM05D004712 ORTHO05D005306 7.3e-155 550.8 339 80.2
Gohir.A05G044400 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.2e-154 550.1 333 79.0
RcHm_v2.0_Chr6g0310381 Rosa chinensis HOM05D004712 ORTHO05D005306 1.2e-154 550.1 339 77.6
Cc08_g10100 Coffea canephora HOM05D004712 ORTHO05D005306 2.1e-154 549.3 335 77.3
Hma1.2p1_1266F.1_g271360 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.0e-153 547.0 308 83.4
Nn6g35381 Nelumbo nucifera HOM05D004712 ORTHO05D005306 1.0e-153 547.0 344 77.0
Hund03367 Selenicereus undatus HOM05D004712 ORTHO05D005306 1.0e-153 547.0 339 77.3
Sc09g0009600 Simmondsia chinensis HOM05D004712 ORTHO05D005306 4.0e-153 545.0 339 77.6
FvH4_2g32310 Fragaria vesca HOM05D004712 ORTHO05D005306 8.9e-153 543.9 328 78.4
Lalb_Chr22g0355941 Lupinus albus HOM05D004712 ORTHO05D005306 1.5e-152 543.1 325 77.5
CSS0005003 Camellia sinensis var. sinensis HOM05D004712 ORTHO05D005306 2.0e-152 542.7 338 77.2
FAN20G0488 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.4e-152 541.6 328 78.0
Peaxi162Scf00840g00117 Petunia axillaris HOM05D004712 ORTHO05D005306 7.5e-152 540.8 339 77.0
FAN27G0349 Fragaria x ananassa HOM05D004712 ORTHO05D005306 9.8e-152 540.4 328 77.7
Actinidia21731 Actinidia chinensis HOM05D004712 ORTHO05D005306 2.9e-151 538.9 338 75.7
FAN24G2925 Fragaria x ananassa HOM05D004712 ORTHO05D005306 3.7e-151 538.5 328 78.0
EL10Ac2g03950 Beta vulgaris HOM05D004712 ORTHO05D005306 4.9e-151 538.1 339 76.4
FAN15G0413 Fragaria x ananassa HOM05D004712 ORTHO05D005306 4.9e-151 538.1 328 77.7
THA.LOC104803739 Tarenaya hassleriana HOM05D004712 ORTHO05D005306 4.9e-151 538.1 339 75.2
Migut.A00161 Erythranthe guttata HOM05D004712 ORTHO05D005306 6.4e-151 537.7 334 75.7
Aqoxy7G03946 Aquilegia oxysepala HOM05D004712 ORTHO05D005306 2.4e-150 535.8 339 74.9
AUR62009206 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.4e-150 535.8 339 75.8
SalBow4G3242 Salvia bowleyana HOM05D004712 ORTHO05D005306 9.2e-150 533.9 333 75.4
HanXRQChr17g0538901 Helianthus annuus HOM05D004712 ORTHO05D005306 3.5e-149 531.9 339 74.3
Lj5g0015176 Lotus japonicus HOM05D004712 ORTHO05D005306 3.5e-149 531.9 341 77.1
BcaB06g29616 Brassica carinata HOM05D004712 ORTHO05D005306 5.9e-149 531.2 340 73.5
Duzib150G0899 Durio zibethinus HOM05D004712 ORTHO05D005306 5.9e-149 531.2 340 76.2
Sp4g05810 Schrenkiella parvula HOM05D004712 ORTHO05D005306 1.0e-148 530.4 340 74.1
GSVIVG01016906001 Vitis vinifera HOM05D004712 ORTHO05D005306 1.0e-148 530.4 333 76.6
ECA246G0363 Erigeron canadensis HOM05D004712 ORTHO05D005306 1.7e-148 529.6 339 75.2
TWI63G0904 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 1.7e-148 529.6 337 76.0
PSO210G0832 Papaver somniferum HOM05D004712 ORTHO05D005306 3.9e-148 528.5 327 75.2
C04p55830 Brassica napus HOM05D004712 ORTHO05D005306 6.6e-148 527.7 341 73.6
QL05p017273 Quercus lobata HOM05D004712 ORTHO05D005306 6.6e-148 527.7 329 76.6
PGR031G0938 Punica granatum HOM05D004712 ORTHO05D005306 8.6e-148 527.3 322 77.3
CARHR115280 Cardamine hirsuta HOM05D004712 ORTHO05D005306 1.1e-147 526.9 340 73.5
PSO210G7282 Papaver somniferum HOM05D004712 ORTHO05D005306 1.1e-147 526.9 327 74.9
VMungo0647G0552 Vigna mungo HOM05D004712 ORTHO05D005306 1.1e-147 526.9 325 78.5
A04p20130 Brassica napus HOM05D004712 ORTHO05D005306 1.9e-147 526.2 341 73.3
BraA04t17594Z Brassica rapa HOM05D004712 ORTHO05D005306 1.9e-147 526.2 341 73.3
Glyma.17G231700 Glycine max HOM05D004712 ORTHO05D005306 2.5e-147 525.8 344 74.7
Solyc08g065880.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 3.3e-147 525.4 327 74.9
Sabra18G0050600 Salix brachista HOM05D004712 ORTHO05D005306 4.3e-147 525.0 350 73.1
Sopen08g019580 Solanum pennellii HOM05D004712 ORTHO05D005306 4.3e-147 525.0 327 74.9
AL4G17960 Arabidopsis lyrata HOM05D004712 ORTHO05D005306 5.6e-147 524.6 341 74.2
BcaC02g08320 Brassica carinata HOM05D004712 ORTHO05D005306 5.6e-147 524.6 341 73.3
BolC4t27113H Brassica oleracea HOM05D004712 ORTHO05D005306 5.6e-147 524.6 341 73.3
Phvul.001G032800 Phaseolus vulgaris HOM05D004712 ORTHO05D005306 5.6e-147 524.6 346 73.4
Thhalv10002033m.g Eutrema salsugineum HOM05D004712 ORTHO05D005306 7.3e-147 524.2 340 73.2
Glyma.14G091700 Glycine max HOM05D004712 ORTHO05D005306 1.6e-146 523.1 343 74.9
AT2G25910 Arabidopsis thaliana HOM05D004712 ORTHO05D005306 2.8e-146 522.3 340 73.5
QL05p017569 Quercus lobata HOM05D004712 ORTHO05D005306 4.7e-146 521.5 329 76.0
Ca_13194_v3 Cicer arietinum L. HOM05D004712 ORTHO05D005306 4.0e-145 518.5 324 75.3
Aa31LG5G9770 Aethionema arabicum HOM05D004712 ORTHO05D005306 5.2e-145 518.1 351 72.1
Nitab4.5_0005029g0040 Nicotiana tabacum HOM05D004712 ORTHO05D005306 6.8e-145 517.7 333 74.5
MELO3C010771.2 Cucumis melo HOM05D004712 ORTHO05D005306 2.0e-144 516.2 324 74.1
Nitab4.5_0000359g0220 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.0e-144 516.2 333 74.5
TPR.G13042 Trifolium pratense HOM05D004712 ORTHO05D005306 2.6e-144 515.8 324 75.0
DCAR_004451 Daucus carota HOM05D004712 ORTHO05D005306 2.2e-143 512.7 330 76.1
ATR0789G022 Amborella trichopoda HOM05D004712 ORTHO05D005306 8.3e-143 510.8 337 72.4
Psat6g019200 Pisum sativum HOM05D004712 ORTHO05D005306 1.4e-142 510.0 324 74.1
Medtr1g016970 Medicago truncatula HOM05D004712 ORTHO05D005306 5.4e-142 508.1 324 73.5
Rhsim08G0230100 Rhododendron simsii HOM05D004712 ORTHO05D005306 3.5e-141 505.4 383 66.6
AUR62040203 Chenopodium quinoa HOM05D004712 ORTHO05D005306 7.8e-141 504.2 339 72.6
Lsat_1_v5_gn_3_27140 Lactuca sativa HOM05D004712 ORTHO05D005306 7.3e-139 497.7 308 74.4
Rhsim12G0204300 Rhododendron simsii HOM05D004712 ORTHO05D005306 7.3e-139 497.7 337 70.6
arahy.Tifrunner.gnm1.ann1.QZ1T53 Arachis hypogaea HOM05D004712 ORTHO05D005306 1.8e-137 493.0 331 71.3
SEGI_23712 Sequoiadendron giganteum HOM05D004712 ORTHO05D005306 3.1e-137 492.3 315 72.4
Lj7A695G32 Lonicera japonica HOM05D004712 ORTHO05D005306 6.8e-137 491.1 317 76.7
TWI34G1658 Tripterygium wilfordii HOM05D004712 ORTHO05D005306 3.4e-136 488.8 322 73.6
arahy.Tifrunner.gnm1.ann1.289CQF Arachis hypogaea HOM05D004712 ORTHO05D005306 7.5e-136 487.6 331 70.7
Gorai.009G047400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.7e-135 486.5 316 75.9
Os01g0566900 Oryza sativa ssp. japonica HOM05D004712 ORTHO05D005306 5.4e-134 481.5 308 72.1
MBI04_g12189_MAGBIO Magnolia biondii HOM05D004712 ORTHO05D005306 9.2e-134 480.7 347 70.6
CAN.G20.6 Capsicum annuum HOM05D004712 ORTHO05D005306 1.2e-133 480.3 298 75.8
PGSC0003DMG401002514 Solanum tuberosum HOM05D004712 ORTHO05D005306 3.5e-133 478.8 339 67.6
vmacro05273 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 3.5e-133 478.8 332 71.4
Gohir.D03G057300 Gossypium hirsutum HOM05D004712 ORTHO05D005306 2.3e-132 476.1 331 67.7
Nitab4.5_0005661g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 8.6e-132 474.2 339 68.7
Peaxi162Scf00038g01243 Petunia axillaris HOM05D004712 ORTHO05D005306 1.5e-131 473.4 340 69.1
Zm00001eb159970 Zea mays HOM05D004712 ORTHO05D005306 1.5e-131 473.4 343 66.8
Sed0015351 Sechium edule HOM05D004712 ORTHO05D005306 3.3e-131 472.2 331 69.2
MD15G1062100 Malus domestica HOM05D004712 ORTHO05D005306 4.3e-131 471.9 339 69.3
Zm00001eb356940 Zea mays HOM05D004712 ORTHO05D005306 4.7e-130 468.4 331 68.3
Ah.10g034640 Amaranthus hybridus HOM05D004712 ORTHO05D005306 8.4e-127 457.6 361 63.2
Eucgr.C00628 Eucalyptus grandis HOM05D004712 ORTHO05D005306 1.1e-126 457.2 265 81.5
Gohir.A02G116301 Gossypium hirsutum HOM05D004712 ORTHO05D005306 1.1e-126 457.2 307 68.1
AUR62040198 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.1e-125 453.0 319 70.2
HPP92_009150 Vanilla planifolia HOM05D004712 ORTHO05D005306 2.1e-125 453.0 328 65.2
Nitab4.5_0010821g0020 Nicotiana tabacum HOM05D004712 ORTHO05D005306 2.1e-122 443.0 317 67.8
Dinv30410 Davidia involucrata HOM05D004712 ORTHO05D005306 8.1e-122 441.0 263 79.5
AagrBONN_evm.TU.Sc2ySwM_228.3302 Anthoceros agrestis HOM05D004712 ORTHO05D005306 1.5e-120 436.8 306 66.0
AUR62031977 Chenopodium quinoa HOM05D004712 ORTHO05D005306 2.9e-119 432.6 303 65.3
Mapoly0072s0029 Marchantia polymorpha HOM05D004712 ORTHO05D005306 4.2e-118 428.7 317 64.0
Lj5A50G64 Lonicera japonica HOM05D004712 ORTHO05D005306 1.7e-116 423.3 289 70.2
Solyc03g121250.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.7e-116 423.3 283 70.7
Manes.16G077100 Manihot esculenta HOM05D004712 ORTHO05D005306 6.6e-116 421.4 245 81.2
SMO174G0103 Selaginella moellendorffii HOM05D004712 ORTHO05D005306 3.4e-112 409.1 319 62.1
Pp3c15_8210 Physcomitrium patens HOM05D004712 ORTHO05D005306 1.4e-110 403.7 315 61.0
Sopen01g026340 Solanum pennellii HOM05D000014 ORTHO05D005306 1.0e-108 397.5 306 63.4
Sopen03g040060 Solanum pennellii HOM05D004712 ORTHO05D005306 8.7e-108 394.4 287 67.2
vmacro17006 Vaccinium macrocarpon HOM05D004712 ORTHO05D005306 7.4e-107 391.3 403 52.9
Glyma.04G087900 Glycine max HOM05D004712 ORTHO05D005306 1.8e-97 360.1 306 60.1
Carub.0004s0573 Capsella rubella HOM05D004712 ORTHO05D005306 5.8e-96 355.1 222 76.1
COL.COLO4_30565 Corchorus olitorius HOM05D004712 ORTHO05D005306 4.2e-94 349.0 247 67.6
CAN.G1143.35 Capsicum annuum HOM05D004712 ORTHO05D005306 1.1e-91 340.9 248 65.7
AUR62022272 Chenopodium quinoa HOM05D004712 ORTHO05D005306 3.4e-88 329.3 220 67.7
Pp3c9_13080 Physcomitrium patens HOM05D004712 ORTHO05D005306 3.3e-83 312.8 235 63.0
unitig_748.g8268 Utricularia gibba HOM05D004712 ORTHO05D005306 2.5e-78 296.6 300 50.0
unitig_32.g10885 Utricularia gibba HOM05D004712 ORTHO05D005306 5.7e-75 285.4 268 55.2
CDE06G1081 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 8.5e-71 271.6 168 75.0
Solyc01g060200.3 Solanum lycopersicum HOM05D004712 ORTHO05D005306 1.4e-70 270.8 304 47.7
Cpa.g.sc1834.1 Carica papaya HOM05D004712 ORTHO05D005306 2.5e-70 270.0 175 73.1
Gorai.003G060400 Gossypium raimondii HOM05D004712 ORTHO05D005306 1.5e-59 234.2 178 65.7
SGA_v2.0_scaffold88G27214 Striga asiatica HOM05D004712 ORTHO05D005306 2.2e-58 230.3 139 75.5
Cpa.g.c30793.3 Carica papaya HOM05D004712 ORTHO05D005306 1.1e-57 228.0 131 79.4
CDE06G1637 Ceratophyllum demersum HOM05D004712 ORTHO05D005306 8.3e-50 201.8 125 76.8
Glyma.20G062400 Glycine max HOM05D004712 ORTHO05D005306 1.3e-34 151.4 98 75.5
ATR0626G141 Amborella trichopoda HOM05D004712 ORTHO05D005306 6.6e-31 139.0 171 50.9
Cpa.g.sc131.9 Carica papaya HOM05D004712 ORTHO05D005306 1.6e-24 117.9 75 66.7
Cpa.g.sc131.11 Carica papaya HOM05D004712 ORTHO05D005306 4.6e-24 116.3 64 82.8
Cc04_g02330 Coffea canephora HOM05D004712 ORTHO05D005306 1.0e-23 115.2 169 42.0
Cpa.g.sc131.8 Carica papaya HOM05D004712 ORTHO05D005306 3.0e-23 113.6 77 68.8
Hma1.2p1_0051F.1_g029750 Hydrangea macrophylla HOM05D004712 ORTHO05D005306 1.9e-22 110.9 66 75.8
TAR636G2080 Trochodendron aralioides HOM05D000850 ORTHO05D000266 8.9e-20 102.1 80 70.0
COL.COLO4_30564 Corchorus olitorius HOM05D004712 ORTHO05D005306 5.1e-15 86.3 55 70.9
MSTRG.22613 Avicennia marina HOM05D004712 ORTHO05D005306 1.1e-12 78.6 86 48.8
Cre03.g152425 Chlamydomonas reinhardtii HOM05D004712 ORTHO05D005306 2.6e-11 73.9 228 24.6
Nn4g24691 Nelumbo nucifera HOM05D004712 ORTHO05D005306 4.4e-11 73.2 41 78.0
MCO15G238 Micromonas commoda HOM05D015906 ORTHO05D005306 4.9e-10 69.7 95 38.9
Cre03.g152400 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D028597 1.4e-09 68.2 193 28.5
EL10Ac9g21163 Beta vulgaris HOM05D004712 ORTHO05D005306 7.1e-09 65.9 78 50.0
MCO09G663 Micromonas commoda HOM05D015906 ORTHO05D005306 9.2e-09 65.5 166 29.5
Cre03.g205921 Chlamydomonas reinhardtii HOM05D015906 ORTHO05D005306 2.3e-07 60.8 213 25.8
ATR0697G132 Amborella trichopoda HOM05D002024 ORTHO05D004352 6.6e-07 59.3 154 26.6
Pp3c4_22010 Physcomitrium patens HOM05D002024 ORTHO05D004352 8.6e-07 58.9 208 23.1
BraA04t18006Z Brassica rapa HOM05D002024 ORTHO05D007288 1.1e-06 58.5 157 29.9
Cre03.g205300 Chlamydomonas reinhardtii HOM05D062317 ORTHO05D140869 2.5e-06 57.4 149 29.5
SEGI_14026 Sequoiadendron giganteum HOM05D002024 ORTHO05D004352 4.3e-06 56.6 214 23.8
Duzib106G0860 Durio zibethinus HOM05D002024 ORTHO05D004352 5.6e-06 56.2 154 27.9
COL.COLO4_28619 Corchorus olitorius HOM05D002024 ORTHO05D004352 7.3e-06 55.8 154 27.3
Hund15117 Selenicereus undatus HOM05D002024 ORTHO05D004352 7.3e-06 55.8 158 29.1
MELO3C008822.2 Cucumis melo HOM05D002024 ORTHO05D004352 9.6e-06 55.5 155 27.1
DCAR_009083 Daucus carota HOM05D002024 ORTHO05D004352 9.6e-06 55.5 154 26.0
Lsat_1_v5_gn_6_31721 Lactuca sativa HOM05D002024 ORTHO05D004352 9.6e-06 55.5 154 26.6
Nn6g32382 Nelumbo nucifera HOM05D002024 ORTHO05D004352 9.6e-06 55.5 154 26.6
Thecc.05G244100 Theobroma cacao HOM05D002024 ORTHO05D004352 9.6e-06 55.5 154 27.3
TWI60G0427 Tripterygium wilfordii HOM05D002024 ORTHO05D004352 9.6e-06 55.5 156 27.6


User provided reference genes

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