Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G080300 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1483.0 743 100.0
CiPaw.13G112600 Carya illinoinensis HOM05D004298 ORTHO05D006236 0.0e+00 1408.7 743 94.9
QL01p022296 Quercus lobata HOM05D004298 ORTHO05D006236 0.0e+00 1372.8 743 93.0
MD11G1135000 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1369.0 744 91.5
Cpa.g.sc216.13 Carica papaya HOM05D004298 ORTHO05D006236 0.0e+00 1366.7 743 91.4
Haze_23837 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1365.5 765 90.3
Haze_23839 Corylus avellana HOM05D004298 ORTHO05D006236 0.0e+00 1365.5 765 90.3
Prupe.6G101000 Prunus persica HOM05D004298 ORTHO05D006236 0.0e+00 1361.3 743 90.4
Thecc.09G340000 Theobroma cacao HOM05D004298 ORTHO05D006236 0.0e+00 1359.0 743 90.3
Manes.04G021700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1358.6 743 89.9
MD03G1117300 Malus domestica HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 743 90.7
Manes.11G144700 Manihot esculenta HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 743 90.2
GSVIVG01025182001 Vitis vinifera HOM05D004298 ORTHO05D006236 0.0e+00 1357.8 743 90.0
CSS0023686 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1355.1 743 90.6
arahy.Tifrunner.gnm1.ann1.VBZF8N Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1354.3 740 90.4
RcHm_v2.0_Chr5g0059471 Rosa chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1354.3 743 90.2
Duzib168G1617 Durio zibethinus HOM05D004298 ORTHO05D006236 0.0e+00 1353.2 743 90.0
Gorai.004G228600 Gossypium raimondii HOM05D004298 ORTHO05D006236 0.0e+00 1352.4 743 89.9
arahy.Tifrunner.gnm1.ann1.ETHX4E Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1350.5 740 90.3
Gohir.D08G214700 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1348.2 743 89.6
FAN25G3839 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1347.4 743 89.5
Nn2g10781 Nelumbo nucifera HOM05D004298 ORTHO05D006236 0.0e+00 1347.0 743 89.8
FvH4_3g32460 Fragaria vesca HOM05D004298 ORTHO05D006236 0.0e+00 1344.3 743 89.4
FAN21G2260 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1343.6 743 89.1
FAN16G0818 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1342.4 743 89.1
FAN11G2723 Fragaria x ananassa HOM05D004298 ORTHO05D006236 0.0e+00 1342.0 743 89.4
Gohir.A08G197500 Gossypium hirsutum HOM05D004298 ORTHO05D006236 0.0e+00 1341.6 749 89.1
TWI79G1123 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1341.6 743 89.2
CSS0023657 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1340.5 742 89.8
CSS0037274 Camellia sinensis var. sinensis HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 742 89.6
PGR102G1912 Punica granatum HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 743 89.0
TAR636G1671 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1338.6 744 89.5
TAR636G3405 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1335.9 744 89.4
Potri.009G013400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1335.5 742 89.4
Potri.004G210400 Populus trichocarpa HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 741 88.9
VMungo1080G1181 Vigna mungo HOM05D004298 ORTHO05D006236 0.0e+00 1335.1 743 88.8
TPR.G11486 Trifolium pratense HOM05D004298 ORTHO05D006236 0.0e+00 1334.7 743 89.5
Glyma.13G326400 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1334.3 745 88.9
Hma1.2p1_1031F.1_g250050 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 741 89.2
TWI31G1183 Tripterygium wilfordii HOM05D004298 ORTHO05D006236 0.0e+00 1333.5 743 88.4
Ca_01417_v3 Cicer arietinum L. HOM05D004298 ORTHO05D006236 0.0e+00 1332.0 743 89.5
Lj3g0003128 Lotus japonicus HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 770 86.6
Medtr2g094160 Medicago truncatula HOM05D004298 ORTHO05D006236 0.0e+00 1330.5 743 89.4
Ciclev10027881m.g Citrus clementina HOM05D004298 ORTHO05D006236 0.0e+00 1330.1 743 88.3
Sabra09G0008100 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1329.3 743 88.4
Actinidia20454 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1323.9 743 89.1
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 0.0e+00 1323.1 747 88.0
CANSAT54G2863 Cannabis sativa HOM05D004298 ORTHO05D006236 0.0e+00 1322.8 743 88.2
Peaxi162Scf00270g00819 Petunia axillaris HOM05D004298 ORTHO05D006236 0.0e+00 1320.8 743 88.6
Phvul.005G135800 Phaseolus vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1318.9 743 87.3
Lalb_Chr14g0374701 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1313.9 742 87.3
Nitab4.5_0000650g0220 Nicotiana tabacum HOM05D004298 ORTHO05D006236 0.0e+00 1313.5 743 88.2
Rhsim01G0217200 Rhododendron simsii HOM05D004298 ORTHO05D006236 0.0e+00 1313.1 737 88.6
Psat5g278240 Pisum sativum HOM05D004298 ORTHO05D006236 0.0e+00 1311.6 743 87.3
SalBow3G4399 Salvia bowleyana HOM05D004298 ORTHO05D006236 0.0e+00 1310.4 744 87.0
Sed0018088 Sechium edule HOM05D004298 ORTHO05D006236 0.0e+00 1308.1 742 87.2
MSTRG.12319 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 744 87.4
MSTRG.17806 Avicennia marina HOM05D004298 ORTHO05D006236 0.0e+00 1306.2 744 86.7
CAN.G631.24 Capsicum annuum HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 743 87.9
PGSC0003DMG400008050 Solanum tuberosum HOM05D004298 ORTHO05D006236 0.0e+00 1303.1 743 88.0
Eucgr.B02495 Eucalyptus grandis HOM05D004298 ORTHO05D006236 0.0e+00 1302.7 743 86.9
DCAR_015537 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1302.3 743 86.5
CsaV3_1G012820 Cucumis sativus L. HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 742 87.3
Lalb_Chr03g0027311 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1301.6 744 87.0
Oeu002865.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 745 87.4
Solyc11g069380.2 Solanum lycopersicum HOM05D004298 ORTHO05D006236 0.0e+00 1300.8 743 87.2
Sopen11g028100 Solanum pennellii HOM05D004298 ORTHO05D006236 0.0e+00 1300.4 743 87.1
MELO3C005061.2 Cucumis melo HOM05D004298 ORTHO05D006236 0.0e+00 1300.0 742 87.2
Sp6g22170 Schrenkiella parvula HOM05D004298 ORTHO05D006236 0.0e+00 1298.5 742 85.8
Oeu059093.1 Olea europaea HOM05D004298 ORTHO05D006236 0.0e+00 1298.1 744 87.2
arahy.Tifrunner.gnm1.ann1.068WZH Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 744 86.6
Lsat_1_v5_gn_2_98360 Lactuca sativa HOM05D004298 ORTHO05D006236 0.0e+00 1297.7 743 86.1
Migut.N02606 Erythranthe guttata HOM05D004298 ORTHO05D006236 0.0e+00 1297.0 745 86.8
Aa31LG1G12580 Aethionema arabicum HOM05D004298 ORTHO05D006236 0.0e+00 1295.8 742 85.4
Thhalv10012774m.g Eutrema salsugineum HOM05D004298 ORTHO05D006236 0.0e+00 1295.0 743 85.7
HanXRQChr14g0452871 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1294.6 743 85.7
HanXRQChr07g0197541 Helianthus annuus HOM05D004298 ORTHO05D006236 0.0e+00 1294.3 743 86.0
AT5G60600 Arabidopsis thaliana HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 742 85.3
Lj2C1029T7 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1293.5 743 85.9
Ah.01g014360 Amaranthus hybridus HOM05D004298 ORTHO05D006236 0.0e+00 1292.7 743 85.9
THA.LOC104810855 Tarenaya hassleriana HOM05D004298 ORTHO05D006236 0.0e+00 1292.3 743 86.1
AL8G37190 Arabidopsis lyrata HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 742 85.3
BraA10t43856Z Brassica rapa HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 742 85.3
CARHR274260 Cardamine hirsuta HOM05D004298 ORTHO05D006236 0.0e+00 1291.9 742 85.8
Carub.0008s2128 Capsella rubella HOM05D004298 ORTHO05D006236 0.0e+00 1290.4 742 85.3
Cc01_g11160 Coffea canephora HOM05D004298 ORTHO05D006236 0.0e+00 1289.6 743 86.5
A10p17790 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1289.2 742 85.0
BcaB08g36355 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 742 85.3
AUR62024990 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 743 85.9
Dinv32749 Davidia involucrata HOM05D004298 ORTHO05D006236 0.0e+00 1288.9 709 90.0
arahy.Tifrunner.gnm1.ann1.X2DMBM Arachis hypogaea HOM05D004298 ORTHO05D006236 0.0e+00 1288.5 743 85.9
PSO384G0735 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1285.0 745 85.4
Aqoxy1G01246 Aquilegia oxysepala HOM05D004298 ORTHO05D006236 0.0e+00 1284.2 743 85.5
PSO339G0771 Papaver somniferum HOM05D004298 ORTHO05D006236 0.0e+00 1283.9 745 85.2
Lalb_Chr24g0394611 Lupinus albus HOM05D004298 ORTHO05D006236 0.0e+00 1282.7 740 85.5
EL10Ac9g22507 Beta vulgaris HOM05D004298 ORTHO05D006236 0.0e+00 1281.2 743 85.6
C09p53300 Brassica napus HOM05D004298 ORTHO05D006236 0.0e+00 1279.6 742 85.2
ClCG03G002170 Citrullus lanatus HOM05D004298 ORTHO05D006236 0.0e+00 1279.2 805 80.7
ATR0115G030 Amborella trichopoda HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 746 84.7
TAR633G1103 Trochodendron aralioides HOM05D004298 ORTHO05D006236 0.0e+00 1275.8 713 89.2
Hund08138 Selenicereus undatus HOM05D004298 ORTHO05D006236 0.0e+00 1275.4 743 85.1
vmacro14439 Vaccinium macrocarpon HOM05D004298 ORTHO05D006236 0.0e+00 1275.4 824 79.7
ECA238G4788 Erigeron canadensis HOM05D004298 ORTHO05D006236 0.0e+00 1271.5 744 84.3
BcaC04g19719 Brassica carinata HOM05D004298 ORTHO05D006236 0.0e+00 1269.6 739 84.8
CDE02G3870 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1264.6 747 83.4
unitig_27.g25060 Utricularia gibba HOM05D004298 ORTHO05D006236 0.0e+00 1258.4 722 86.6
AUR62039630 Chenopodium quinoa HOM05D004298 ORTHO05D006236 0.0e+00 1257.3 759 83.0
BolC9t58204H Brassica oleracea HOM05D004298 ORTHO05D006236 0.0e+00 1253.0 775 81.3
Os02g0603800 Oryza sativa ssp. japonica HOM05D004298 ORTHO05D006236 0.0e+00 1238.4 747 82.6
DCAR_006060 Daucus carota HOM05D004298 ORTHO05D006236 0.0e+00 1233.4 709 85.8
Actinidia03730 Actinidia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1229.9 738 85.2
Lj2C1029G11 Lonicera japonica HOM05D004298 ORTHO05D006236 0.0e+00 1228.8 743 83.2
SEGI_29082 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 0.0e+00 1228.4 739 81.9
Atru.BG.119.p Acer truncatum HOM05D004298 ORTHO05D006236 0.0e+00 1224.9 668 90.7
MBI07_g19314_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D006236 0.0e+00 1222.2 712 85.3
Zm00001eb246530 Zea mays HOM05D004298 ORTHO05D006236 0.0e+00 1218.4 747 81.7
Glyma.12G173200 Glycine max HOM05D004298 ORTHO05D006236 0.0e+00 1204.5 676 88.5
CDE08G0282 Ceratophyllum demersum HOM05D004298 ORTHO05D006236 0.0e+00 1199.9 747 79.1
SGA_v2.0_scaffold2G00894 Striga asiatica HOM05D004298 ORTHO05D006236 0.0e+00 1192.2 747 81.1
Sc06g0010150 Simmondsia chinensis HOM05D004298 ORTHO05D006236 0.0e+00 1140.6 616 90.6
HPP92_014714 Vanilla planifolia HOM05D004298 ORTHO05D006236 0.0e+00 1126.7 631 87.8
Mapoly0048s0084 Marchantia polymorpha HOM05D004298 ORTHO05D006236 0.0e+00 1121.3 741 75.8
SMO146G0141 Selaginella moellendorffii HOM05D004298 ORTHO05D006236 0.0e+00 1114.8 688 78.9
Pp3c19_16320 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1108.2 748 73.3
Pp3c22_14940 Physcomitrium patens HOM05D004298 ORTHO05D006236 0.0e+00 1086.2 708 75.0
Pp3c21_19070 Physcomitrium patens HOM05D004298 ORTHO05D006236 8.9e-307 1056.6 686 74.5
AagrBONN_evm.TU.Sc2ySwM_117.2437 Anthoceros agrestis HOM05D004298 ORTHO05D006236 1.2e-292 1009.6 636 78.3
Cre12.g490350 Chlamydomonas reinhardtii HOM05D004298 ORTHO05D006236 5.1e-246 854.7 668 64.2
MCO10G060 Micromonas commoda HOM05D004298 ORTHO05D006236 1.3e-233 813.5 702 60.0
Nitab4.5_0006333g0040 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.8e-227 793.1 540 76.9
PRCOL_00002263 Prasinoderma coloniale HOM05D004298 ORTHO05D006236 2.0e-218 763.1 644 62.4
Hma1.2p1_0391F.1_g142750 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.8e-211 740.0 523 73.4
Nitab4.5_0012814g0010 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.0e-209 734.2 743 56.7
COL.COLO4_18338 Corchorus olitorius HOM05D004298 ORTHO05D006236 6.5e-209 731.5 453 82.3
Nitab4.5_0011114g0030 Nicotiana tabacum HOM05D004298 ORTHO05D006236 1.9e-208 729.9 741 56.4
Atru.chr3.3635 Acer truncatum HOM05D004298 ORTHO05D006236 2.5e-208 729.6 465 80.0
SGA_v2.0_scaffold84G26546 Striga asiatica HOM05D004298 ORTHO05D006236 1.9e-136 490.7 433 62.4
HanXRQChr13g0402271 Helianthus annuus HOM05D004298 ORTHO05D006236 3.8e-132 476.5 263 87.8
Hma1.2p1_1031F.1_g250040 Hydrangea macrophylla HOM05D004298 ORTHO05D006236 1.4e-97 361.7 220 84.5
CBR_g51121 Chara braunii HOM05D004298 ORTHO05D006236 8.9e-81 305.8 578 36.7
C09p53310 Brassica napus HOM05D004298 ORTHO05D006236 1.0e-76 292.4 155 90.3
HanXRQChr02g0034121 Helianthus annuus HOM05D004298 ORTHO05D006236 3.7e-71 273.9 143 91.6
Nitab4.5_0005621g0180 Nicotiana tabacum HOM05D004609 ORTHO05D005537 1.5e-59 235.3 170 72.4
Ca_28980_v3 Cicer arietinum L. HOM05D004298 ORTHO05D007370 1.2e-40 172.6 294 37.1
MBI12_g33358_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 8.4e-39 166.4 84 91.7
TAR636G3504 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.6e-37 160.6 98 80.6
MBI12_g31227_MAGBIO Magnolia biondii HOM05D004298 ORTHO05D025791 1.5e-35 155.6 80 91.2
HanXRQChr12g0375701 Helianthus annuus HOM05D004298 ORTHO05D006236 8.1e-26 123.2 72 80.6
TAR636G1311 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.1e-25 122.9 80 75.0
CAN.G907.27 Capsicum annuum HOM05D002478 ORTHO05D020307 1.8e-25 122.1 71 83.1
SEGI_39119 Sequoiadendron giganteum HOM05D004298 ORTHO05D006236 1.9e-22 112.1 69 73.9
Nn1g05516 Nelumbo nucifera HOM05D001057 ORTHO05D002028 2.1e-21 108.6 70 74.3
arahy.Tifrunner.gnm1.ann1.BZC8YM Arachis hypogaea HOM05D004298 ORTHO05D000893 1.8e-20 105.5 108 54.6
CAN.G53.21 Capsicum annuum HOM05D002478 ORTHO05D020307 2.5e-19 101.7 73 74.0
SEGI_37191 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.6e-18 99.0 222 34.2
SGA_v2.0_scaffold12G06316 Striga asiatica HOM05D004298 ORTHO05D023169 2.8e-18 98.2 85 56.5
COL.COLO4_18339 Corchorus olitorius HOM05D004298 ORTHO05D160745 1.4e-17 95.9 71 66.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.1e-17 94.7 57 77.2
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 2.0e-16 92.0 58 72.4
SGA_v2.0_scaffold290G47319 Striga asiatica HOM05D004298 ORTHO05D023169 7.6e-16 90.1 85 52.9
Peaxi162Scf00218g02111 Petunia axillaris HOM05D004298 ORTHO05D008833 9.3e-14 83.2 89 55.1
Cc00_g31230 Coffea canephora HOM05D004298 ORTHO05D006236 3.5e-13 81.3 47 83.0
SEGI_34190 Sequoiadendron giganteum HOM05D004298 ORTHO05D050955 1.8e-12 79.0 61 62.3
TAR381G0461 Trochodendron aralioides HOM05D004298 ORTHO05D023169 4.8e-10 70.9 47 74.5
CAN.G548.17 Capsicum annuum HOM05D002478 ORTHO05D005706 6.3e-10 70.5 43 69.8
SEGI_14813 Sequoiadendron giganteum HOM05D016845 ORTHO05D018122 8.2e-10 70.1 40 82.5
TAR156G0002 Trochodendron aralioides HOM05D000002 ORTHO05D000001 1.8e-09 68.9 46 73.9
TAR381G1634 Trochodendron aralioides HOM05D004298 ORTHO05D023169 1.8e-09 68.9 45 75.6
TAR625G1187 Trochodendron aralioides HOM05D006212 ORTHO05D008245 1.2e-08 66.2 33 93.9
SGA_v2.0_scaffold28G11882 Striga asiatica HOM05D000239 ORTHO05D000484 3.4e-08 64.7 144 31.2


User provided reference genes

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