Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.14G018200 Carya illinoinensis HOM05D004270 ORTHO05D005037 5.4e-167 590.9 291 100.0
Thecc.06G006500 Theobroma cacao HOM05D004270 ORTHO05D005037 4.6e-158 561.2 291 92.4
RcHm_v2.0_Chr5g0023881 Rosa chinensis HOM05D004270 ORTHO05D005037 4.3e-156 554.7 291 92.1
Ca_08047_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 9.5e-156 553.5 291 90.7
Ca_08053_v3 Cicer arietinum L. HOM05D004270 ORTHO05D005037 9.5e-156 553.5 291 90.7
Potri.005G199100 Populus trichocarpa HOM05D004270 ORTHO05D005037 2.8e-155 552.0 291 91.4
Lj1g0019682 Lotus japonicus HOM05D004270 ORTHO05D005037 6.2e-155 550.8 291 91.1
Psat3g099560 Pisum sativum HOM05D004270 ORTHO05D005037 6.2e-155 550.8 291 90.0
Potri.002G061900 Populus trichocarpa HOM05D004270 ORTHO05D005037 6.2e-155 550.8 291 91.8
FvH4_3g14500 Fragaria vesca HOM05D004270 ORTHO05D005037 1.1e-154 550.1 291 91.4
Ciclev10005458m.g Citrus clementina HOM05D004270 ORTHO05D005037 1.8e-154 549.3 291 90.4
arahy.Tifrunner.gnm1.ann1.D5XWDC Arachis hypogaea HOM05D004270 ORTHO05D005037 2.4e-154 548.9 291 90.4
Duzib187G1348 Durio zibethinus HOM05D004270 ORTHO05D005037 2.4e-154 548.9 291 91.8
FAN25G1815 Fragaria x ananassa HOM05D004270 ORTHO05D005037 6.8e-154 547.4 291 91.1
Prupe.4G129800 Prunus persica HOM05D004270 ORTHO05D005037 6.8e-154 547.4 291 90.7
arahy.Tifrunner.gnm1.ann1.PIH8R2 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.9e-154 547.0 291 90.0
Duzib268G0296 Durio zibethinus HOM05D004270 ORTHO05D005037 8.9e-154 547.0 291 91.1
Glyma.09G244900 Glycine max HOM05D004270 ORTHO05D005037 2.0e-153 545.8 289 90.7
Nn6g34391 Nelumbo nucifera HOM05D004270 ORTHO05D005037 5.8e-153 544.3 288 90.6
VMungo1383G2841 Vigna mungo HOM05D004270 ORTHO05D005037 5.8e-153 544.3 291 89.3
Medtr7g081220 Medicago truncatula HOM05D004270 ORTHO05D005037 7.6e-153 543.9 291 89.3
THA.LOC104812380 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 7.6e-153 543.9 288 89.2
TPR.G21772 Trifolium pratense HOM05D004270 ORTHO05D005037 7.6e-153 543.9 291 89.3
TAR636G3127 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.3e-152 543.1 291 90.4
Manes.03G080050 Manihot esculenta HOM05D004270 ORTHO05D005037 1.7e-152 542.7 291 90.4
Sc15g0006060 Simmondsia chinensis HOM05D004270 ORTHO05D005037 1.7e-152 542.7 291 89.0
Thhalv10008359m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 2.2e-152 542.3 290 90.3
GSVIVG01036737001 Vitis vinifera HOM05D004270 ORTHO05D005037 2.2e-152 542.3 291 90.4
Atru.chr1.67 Acer truncatum HOM05D004270 ORTHO05D005037 6.4e-152 540.8 291 90.4
ClCG03G001640 Citrullus lanatus HOM05D004270 ORTHO05D005037 6.4e-152 540.8 288 90.3
Actinidia07391 Actinidia chinensis HOM05D004270 ORTHO05D005037 8.4e-152 540.4 291 89.3
CSS0035574 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 8.4e-152 540.4 291 90.0
MD10G1213400 Malus domestica HOM05D004270 ORTHO05D005037 1.1e-151 540.0 291 89.0
Phvul.008G049000 Phaseolus vulgaris HOM05D004270 ORTHO05D005037 1.4e-151 539.7 288 89.6
Sp5g34553 Schrenkiella parvula HOM05D004270 ORTHO05D005037 2.4e-151 538.9 291 89.0
CARHR073160 Cardamine hirsuta HOM05D004270 ORTHO05D005037 3.2e-151 538.5 291 89.3
TWI12G0564 Tripterygium wilfordii HOM05D004270 ORTHO05D005037 4.2e-151 538.1 291 90.0
Haze_02880 Corylus avellana HOM05D004270 ORTHO05D005037 7.1e-151 537.3 272 95.2
Gohir.D08G090400 Gossypium hirsutum HOM05D004270 ORTHO05D005037 9.2e-151 537.0 288 89.6
TPR.G29107 Trifolium pratense HOM05D004270 ORTHO05D005037 9.2e-151 537.0 291 89.0
AT1G79500 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 1.2e-150 536.6 291 88.7
BcaC03g15900 Brassica carinata HOM05D004270 ORTHO05D005037 2.7e-150 535.4 291 88.3
Migut.H01658 Erythranthe guttata HOM05D004270 ORTHO05D005037 2.7e-150 535.4 289 88.9
Gorai.004G095400 Gossypium raimondii HOM05D004270 ORTHO05D005037 2.7e-150 535.4 288 89.6
Sed0021681 Sechium edule HOM05D004270 ORTHO05D005037 2.7e-150 535.4 288 89.2
CANSAT78G1193 Cannabis sativa HOM05D004270 ORTHO05D005037 3.5e-150 535.0 289 89.3
CsaV3_1G034040 Cucumis sativus L. HOM05D004270 ORTHO05D005037 3.5e-150 535.0 288 89.6
Thhalv10018956m.g Eutrema salsugineum HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 87.6
Hma1.2p1_0151F.1_g067120 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 3.5e-150 535.0 291 89.3
Carub.0002s2636 Capsella rubella HOM05D004270 ORTHO05D005037 4.6e-150 534.6 291 88.7
AL2G40110 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 88.3
BcaB02g07218 Brassica carinata HOM05D004270 ORTHO05D005037 6.0e-150 534.3 291 88.0
MELO3C020651.2 Cucumis melo HOM05D004270 ORTHO05D005037 7.8e-150 533.9 288 89.6
arahy.Tifrunner.gnm1.ann1.WIVF2E Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-149 533.5 298 85.9
Sabra05G0151600 Salix brachista HOM05D004270 ORTHO05D005037 1.3e-149 533.1 312 83.7
CAN.G84.19 Capsicum annuum HOM05D004270 ORTHO05D005037 1.7e-149 532.7 291 88.0
PGR119G1968 Punica granatum HOM05D004270 ORTHO05D005037 2.3e-149 532.3 286 89.5
AUR62009294 Chenopodium quinoa HOM05D004270 ORTHO05D005037 3.0e-149 531.9 291 86.6
MSTRG.16093 Avicennia marina HOM05D004270 ORTHO05D005037 3.9e-149 531.6 288 87.5
Aqoxy7G03543 Aquilegia oxysepala HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 87.3
DCAR_016846 Daucus carota HOM05D004270 ORTHO05D005037 8.7e-149 530.4 291 86.9
SGA_v2.0_scaffold49G18204 Striga asiatica HOM05D004270 ORTHO05D005037 8.7e-149 530.4 296 87.2
Gohir.A08G080300 Gossypium hirsutum HOM05D004270 ORTHO05D005037 1.1e-148 530.0 288 88.2
CARHR016810 Cardamine hirsuta HOM05D004270 ORTHO05D005037 5.6e-148 527.7 289 88.6
AUR62041708 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 85.9
AUR62043393 Chenopodium quinoa HOM05D004270 ORTHO05D005037 5.6e-148 527.7 291 85.9
Cc11_g02350 Coffea canephora HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 86.3
Solyc11g072690.2 Solanum lycopersicum HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 86.9
Sopen11g030360 Solanum pennellii HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 86.9
PGSC0003DMG400025362 Solanum tuberosum HOM05D004270 ORTHO05D005037 9.6e-148 526.9 291 86.9
THA.LOC104813606 Tarenaya hassleriana HOM05D004270 ORTHO05D005037 9.6e-148 526.9 287 87.8
MSTRG.13089 Avicennia marina HOM05D004270 ORTHO05D005037 1.2e-147 526.6 291 86.9
Os12g0210800 Oryza sativa ssp. japonica HOM05D004270 ORTHO05D005037 2.1e-147 525.8 292 87.7
PSO675G6017 Papaver somniferum HOM05D004270 ORTHO05D005037 2.1e-147 525.8 290 87.6
BraA02t07287Z Brassica rapa HOM05D004270 ORTHO05D005037 2.8e-147 525.4 292 87.7
HanXRQChr14g0449761 Helianthus annuus HOM05D004270 ORTHO05D005037 3.6e-147 525.0 291 86.3
PSO782G4107 Papaver somniferum HOM05D004270 ORTHO05D005037 3.6e-147 525.0 290 86.6
AT1G16340 Arabidopsis thaliana HOM05D004270 ORTHO05D005037 8.1e-147 523.9 290 86.9
vmacro23274 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 8.1e-147 523.9 319 82.1
EL10Ac2g04029 Beta vulgaris HOM05D004270 ORTHO05D005037 1.1e-146 523.5 291 84.9
A02p22860 Brassica napus HOM05D004270 ORTHO05D005037 1.1e-146 523.5 295 86.8
Lsat_1_v5_gn_2_88340 Lactuca sativa HOM05D004270 ORTHO05D005037 2.4e-146 522.3 291 86.3
C02p36680 Brassica napus HOM05D004270 ORTHO05D005037 3.1e-146 521.9 292 86.6
COL.COLO4_12345 Corchorus olitorius HOM05D004270 ORTHO05D005037 6.9e-146 520.8 273 92.3
PSO732G0600 Papaver somniferum HOM05D004270 ORTHO05D005037 9.0e-146 520.4 290 85.9
QL04p092971 Quercus lobata HOM05D004270 ORTHO05D005037 9.0e-146 520.4 272 93.4
Ah.15g099350 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.2e-145 520.0 288 85.1
Ah.15g099360 Amaranthus hybridus HOM05D004270 ORTHO05D005037 1.2e-145 520.0 288 85.1
ECA238G3087 Erigeron canadensis HOM05D004270 ORTHO05D005037 1.2e-145 520.0 292 85.6
AL1G28460 Arabidopsis lyrata HOM05D004270 ORTHO05D005037 1.5e-145 519.6 290 85.9
MD05G1236400 Malus domestica HOM05D004270 ORTHO05D005037 1.5e-145 519.6 291 86.6
BolC6t38147H Brassica oleracea HOM05D004270 ORTHO05D005037 3.4e-145 518.5 291 87.3
BraA07t30356Z Brassica rapa HOM05D004270 ORTHO05D005037 7.6e-145 517.3 291 86.9
Carub.0001s1608 Capsella rubella HOM05D004270 ORTHO05D005037 7.6e-145 517.3 290 87.2
QL04p091607 Quercus lobata HOM05D004270 ORTHO05D005037 7.6e-145 517.3 272 93.0
A07p27110 Brassica napus HOM05D004270 ORTHO05D005037 9.9e-145 516.9 291 86.6
HPP92_024995 Vanilla planifolia HOM05D004270 ORTHO05D005037 9.9e-145 516.9 291 84.9
FAN16G1654 Fragaria x ananassa HOM05D004270 ORTHO05D005037 1.7e-144 516.2 272 91.9
FAN11G3302 Fragaria x ananassa HOM05D004270 ORTHO05D005037 4.9e-144 514.6 288 87.5
Lalb_Chr19g0126381 Lupinus albus HOM05D004270 ORTHO05D005037 6.4e-144 514.2 275 90.9
SGA_v2.0_scaffold239G44014 Striga asiatica HOM05D004270 ORTHO05D005037 1.9e-143 512.7 275 88.7
BolC2t09663H Brassica oleracea HOM05D004270 ORTHO05D005037 2.4e-143 512.3 296 85.1
Glyma.18G248300 Glycine max HOM05D004270 ORTHO05D005037 2.1e-142 509.2 270 90.7
BcaC08g45353 Brassica carinata HOM05D004270 ORTHO05D005037 1.0e-141 506.9 272 90.1
MBI07_g44658_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 1.5e-140 503.1 290 85.2
vmacro11688 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 1.9e-140 502.7 363 72.2
PGR119G0090 Punica granatum HOM05D004270 ORTHO05D005037 3.3e-140 501.9 286 86.0
Zm00001eb138330 Zea mays HOM05D004270 ORTHO05D005037 1.3e-139 500.0 285 84.6
Lj7A89G46 Lonicera japonica HOM05D004270 ORTHO05D005037 1.6e-139 499.6 279 88.5
BcaB05g25203 Brassica carinata HOM05D004270 ORTHO05D005037 4.0e-138 495.0 293 84.3
unitig_744.g24505 Utricularia gibba HOM05D004270 ORTHO05D005037 1.5e-137 493.0 283 84.5
Ah.15g099340 Amaranthus hybridus HOM05D004270 ORTHO05D005037 7.6e-137 490.7 273 84.6
C06p29850 Brassica napus HOM05D004270 ORTHO05D005037 3.8e-136 488.4 272 88.2
Rhsim06G0243500 Rhododendron simsii HOM05D004270 ORTHO05D005037 4.9e-136 488.0 301 81.7
Rhsim03G0145800 Rhododendron simsii HOM05D004270 ORTHO05D005037 6.4e-136 487.6 312 79.8
BcaC08g45351 Brassica carinata HOM05D004270 ORTHO05D005037 1.1e-135 486.9 292 81.8
CSS0009623 Camellia sinensis var. sinensis HOM05D004270 ORTHO05D005037 2.4e-135 485.7 259 90.3
SalBow8G2534 Salvia bowleyana HOM05D004270 ORTHO05D005037 4.2e-135 485.0 295 82.0
SalBow8G3927 Salvia bowleyana HOM05D004270 ORTHO05D005037 4.2e-135 485.0 295 82.0
Aa31LG4G1520 Aethionema arabicum HOM05D004270 ORTHO05D005037 9.3e-135 483.8 272 87.9
Duzib187G1262 Durio zibethinus HOM05D004270 ORTHO05D005037 9.3e-135 483.8 258 91.9
Lj7A89G45 Lonicera japonica HOM05D004270 ORTHO05D005037 3.5e-134 481.9 268 88.4
ATR0743G256 Amborella trichopoda HOM05D004270 ORTHO05D005037 1.3e-131 473.4 256 89.8
ATR0561G061 Amborella trichopoda HOM05D004270 ORTHO05D005037 2.1e-131 472.6 256 90.2
Nitab4.5_0004015g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 1.5e-129 466.5 291 79.4
FAN21G0266 Fragaria x ananassa HOM05D004270 ORTHO05D005037 3.8e-128 461.8 254 89.0
Peaxi162Scf00616g00418 Petunia axillaris HOM05D004270 ORTHO05D005037 4.9e-128 461.5 291 79.4
Pp3c22_7420 Physcomitrium patens HOM05D004270 ORTHO05D005037 1.1e-127 460.3 283 76.0
Eucgr.K01360 Eucalyptus grandis HOM05D004270 ORTHO05D005037 1.4e-127 459.9 247 90.7
Hma1.2p1_2351F.1_g320490 Hydrangea macrophylla HOM05D004270 ORTHO05D005037 9.3e-127 457.2 315 75.2
SMO347G0325 Selaginella moellendorffii HOM05D004270 ORTHO05D005037 1.2e-126 456.8 271 79.3
Oeu026000.2 Olea europaea HOM05D004270 ORTHO05D005037 3.9e-125 451.8 324 70.7
AagrBONN_evm.TU.Sc2ySwM_344.2891 Anthoceros agrestis HOM05D004270 ORTHO05D005037 1.1e-124 450.3 290 73.4
Lj4A247G30 Lonicera japonica HOM05D004270 ORTHO05D005037 1.9e-124 449.5 242 90.9
DCAR_013716 Daucus carota HOM05D004270 ORTHO05D005037 3.7e-123 445.3 238 89.5
PSO832G2042 Papaver somniferum HOM05D004270 ORTHO05D005037 1.0e-120 437.2 290 76.2
CiPaw.13G024200 Carya illinoinensis HOM05D004270 ORTHO05D005037 1.3e-117 426.8 220 93.6
RcHm_v2.0_Chr6g0274781 Rosa chinensis HOM05D004270 ORTHO05D005037 2.2e-115 419.5 275 77.8
vmacro08704 Vaccinium macrocarpon HOM05D004270 ORTHO05D005037 3.7e-115 418.7 394 60.4
Mapoly0024s0056 Marchantia polymorpha HOM05D004270 ORTHO05D005037 2.9e-112 409.1 287 67.9
QL04p093439 Quercus lobata HOM05D004270 ORTHO05D005037 2.7e-102 375.9 400 54.8
CDE05G0560 Ceratophyllum demersum HOM05D004270 ORTHO05D005037 2.8e-99 365.9 192 88.0
arahy.Tifrunner.gnm1.ann1.S8QNVY Arachis hypogaea HOM05D004270 ORTHO05D005037 1.1e-98 364.0 275 68.4
Nitab4.5_0006659g0030 Nicotiana tabacum HOM05D004270 ORTHO05D005037 2.6e-97 359.4 198 86.9
Cpa.g.sc32.74 Carica papaya HOM05D004270 ORTHO05D005037 2.6e-92 342.8 173 93.1
arahy.Tifrunner.gnm1.ann1.IC77ZE Arachis hypogaea HOM05D004270 ORTHO05D005037 2.2e-91 339.7 271 66.4
SHI21470 Sapria himalayana HOM05D004270 ORTHO05D005037 1.2e-86 323.9 278 62.9
Cfa020378 Carpinus fangiana HOM05D004270 ORTHO05D005037 6.3e-83 311.6 245 67.8
CBR_g41577 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-76 290.8 172 77.9
arahy.Tifrunner.gnm1.ann1.06J840 Arachis hypogaea HOM05D004270 ORTHO05D005037 1.0e-69 267.7 194 71.1
Haze_26612 Corylus avellana HOM05D004270 ORTHO05D005037 2.6e-68 263.1 261 49.0
arahy.Tifrunner.gnm1.ann1.IZH1PK Arachis hypogaea HOM05D004270 ORTHO05D005037 4.7e-54 215.7 193 61.7
arahy.Tifrunner.gnm1.ann1.BQF4LJ Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-52 210.7 131 79.4
arahy.Tifrunner.gnm1.ann1.C4QR2M Arachis hypogaea HOM05D004270 ORTHO05D005037 1.5e-52 210.7 131 79.4
QL04p092150 Quercus lobata HOM05D004270 ORTHO05D005037 5.6e-39 165.6 141 63.8
MBI10_g05703_MAGBIO Magnolia biondii HOM05D004270 ORTHO05D005037 7.3e-31 138.7 129 60.5
SEGI_39104 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 8.7e-24 115.2 91 62.6
Lsat_1_v5_gn_3_92901 Lactuca sativa HOM05D004270 ORTHO05D005037 1.5e-23 114.4 72 70.8
vmacro07967 Vaccinium macrocarpon HOM05D004270 ORTHO05D007590 1.3e-22 111.3 66 74.2
arahy.Tifrunner.gnm1.ann1.J4JBIL Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-22 108.6 88 64.8
arahy.Tifrunner.gnm1.ann1.SB2A23 Arachis hypogaea HOM05D004270 ORTHO05D005037 8.1e-22 108.6 88 64.8
Lsat_1_v5_gn_2_10621 Lactuca sativa HOM05D004270 ORTHO05D005037 2.0e-20 104.0 64 78.1
SEGI_07848 Sequoiadendron giganteum HOM05D004270 ORTHO05D005037 8.7e-16 88.6 51 74.5
arahy.Tifrunner.gnm1.ann1.8HXD5I Arachis hypogaea HOM05D004270 ORTHO05D005037 7.4e-15 85.5 46 87.0
RcHm_v2.0_Chr2g0110821 Rosa chinensis HOM05D004270 ORTHO05D005037 1.6e-14 84.3 45 86.7
FAN12G0414 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.5e-12 77.8 90 54.4
FAN12G0605 Fragaria x ananassa HOM05D000835 ORTHO05D035555 1.5e-12 77.8 90 54.4
TAR636G1752 Trochodendron aralioides HOM05D004270 ORTHO05D005037 1.8e-08 64.3 39 82.1
arahy.Tifrunner.gnm1.ann1.FF7QMU Arachis hypogaea HOM05D004270 ORTHO05D005037 2.3e-08 63.9 45 62.2
Dinv19578 Davidia involucrata HOM05D006464 ORTHO05D007923 4.8e-06 56.2 34 79.4


User provided reference genes

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