Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 1.1e-125 453.4 230 100.0
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.3e-103 378.3 230 83.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 7.7e-100 367.5 230 81.7
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 3.1e-93 345.5 291 64.9
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 2.0e-92 342.8 194 87.1
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 5.5e-90 334.7 216 78.7
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 8.0e-89 330.9 241 73.4
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.4e-88 330.1 218 74.3
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 6.7e-88 327.8 195 80.5
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 8.8e-88 327.4 231 74.0
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 2.0e-87 326.2 222 73.9
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 2.6e-87 325.9 234 71.4
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 3.3e-87 325.5 200 80.0
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 3.3e-87 325.5 236 72.5
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 3.3e-87 325.5 188 84.6
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 3.3e-87 325.5 227 71.4
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 4.4e-87 325.1 201 79.6
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 4.4e-87 325.1 184 83.7
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 7.4e-87 324.3 240 70.4
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 7.4e-87 324.3 183 85.8
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 1.3e-86 323.6 203 78.3
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 1.7e-86 323.2 205 77.6
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 2.2e-86 322.8 190 84.7
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 2.2e-86 322.8 218 75.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.2e-86 322.8 218 75.2
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 2.2e-86 322.8 208 78.4
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 2.2e-86 322.8 237 71.7
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 2.8e-86 322.4 212 75.9
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 3.7e-86 322.0 232 70.7
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 3.7e-86 322.0 216 75.0
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 3.7e-86 322.0 180 87.2
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 4.8e-86 321.6 218 74.8
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 4.8e-86 321.6 215 74.9
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 4.8e-86 321.6 236 73.7
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 6.3e-86 321.2 212 75.9
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 6.3e-86 321.2 235 71.5
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 6.3e-86 321.2 184 83.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 8.2e-86 320.9 202 81.2
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 8.2e-86 320.9 214 77.6
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 8.2e-86 320.9 222 75.2
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.1e-85 320.5 219 76.3
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 1.1e-85 320.5 232 71.1
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 83.2
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 1.1e-85 320.5 184 85.9
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.4e-85 320.1 210 75.2
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 1.4e-85 320.1 224 70.5
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 1.4e-85 320.1 222 75.2
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.4e-85 320.1 182 85.2
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 1.8e-85 319.7 216 74.1
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 1.8e-85 319.7 180 83.9
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 1.8e-85 319.7 178 86.5
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 2.4e-85 319.3 232 70.7
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.4e-85 319.3 215 74.0
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.4e-85 319.3 203 79.3
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 3.1e-85 318.9 238 74.4
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 4.1e-85 318.5 233 71.7
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 4.1e-85 318.5 207 77.8
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 5.3e-85 318.2 186 84.9
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 7.0e-85 317.8 210 77.1
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.0e-85 317.8 186 85.5
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 7.0e-85 317.8 186 85.5
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 7.0e-85 317.8 219 73.5
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 9.1e-85 317.4 180 84.4
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 9.1e-85 317.4 220 73.6
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 1.2e-84 317.0 201 80.1
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 1.6e-84 316.6 194 78.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 1.6e-84 316.6 186 81.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 2.0e-84 316.2 212 74.1
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 2.0e-84 316.2 222 74.3
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 2.6e-84 315.8 203 78.3
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 2.6e-84 315.8 247 67.6
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 3.5e-84 315.5 230 68.7
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.5e-84 315.5 210 74.8
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 5.9e-84 314.7 186 83.9
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 5.9e-84 314.7 184 83.7
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 7.7e-84 314.3 219 72.6
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 7.7e-84 314.3 184 83.7
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 7.7e-84 314.3 213 72.3
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.0e-83 313.9 196 78.1
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-83 313.5 195 77.9
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.9e-83 312.4 190 79.5
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 2.9e-83 312.4 200 78.5
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 3.8e-83 312.0 219 71.7
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 8.5e-83 310.8 198 77.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 1.1e-82 310.5 237 70.9
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.1e-82 310.5 211 76.3
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 2.5e-82 309.3 205 74.6
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 4.2e-82 308.5 218 72.9
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 5.5e-82 308.1 187 80.7
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 5.5e-82 308.1 241 67.6
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 7.2e-82 307.8 231 68.0
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.2e-81 307.0 164 87.2
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 1.6e-81 306.6 218 72.0
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 1.6e-81 306.6 218 72.0
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 2.1e-81 306.2 193 78.8
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 3.6e-81 305.4 212 72.6
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.6e-81 305.4 209 72.2
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 6.1e-81 304.7 217 71.4
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 8.0e-81 304.3 210 71.9
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 1.0e-80 303.9 195 77.4
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.8e-80 303.1 180 81.1
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 3.0e-80 302.4 177 83.1
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 5.2e-80 301.6 202 72.8
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 2.0e-79 299.7 232 70.3
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 4.4e-79 298.5 184 79.9
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-78 297.0 202 74.8
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.3e-78 297.0 212 70.8
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 1.2e-73 280.4 267 58.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 1.6e-73 280.0 234 64.1
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 2.7e-73 279.3 198 71.2
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.0e-72 275.8 181 72.4
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-69 267.3 152 83.6
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 2.4e-69 266.2 169 74.6
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.1e-69 265.4 222 65.3
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 6.6e-67 258.1 159 71.1
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 6.6e-67 258.1 220 65.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 8.6e-67 257.7 243 60.5
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 1.4e-64 250.4 199 63.8
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 1.2e-63 247.3 239 58.2
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.1e-58 230.7 154 75.3
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 8.0e-57 224.6 122 88.5
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.0e-57 224.6 209 60.8
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 2.3e-48 196.4 178 61.2
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 3.7e-46 189.1 157 64.3
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.4e-45 187.2 173 61.8
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 6.0e-44 181.8 112 82.1
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 7.3e-42 174.9 101 80.2
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 1.2e-41 174.1 137 65.0
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 7.5e-39 164.9 104 76.0
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 9.9e-39 164.5 104 75.0
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 1.1e-32 144.4 78 93.6
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.4e-31 139.0 109 67.0
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 3.8e-30 136.0 124 59.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 4.9e-30 135.6 78 85.9
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.1e-29 134.4 75 90.7
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 3.2e-29 132.9 194 36.6
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 6.6e-27 125.2 71 90.1
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 8.4e-22 108.2 77 75.3
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 3.3e-18 96.3 62 69.4
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 3.4e-15 86.3 92 53.3
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 1.3e-14 84.3 49 81.6
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.8e-11 73.9 77 51.9
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 3.7e-09 66.2 47 63.8
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 1.4e-08 64.3 54 57.4
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 2.4e-08 63.5 42 71.4
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.2e-07 61.2 28 89.3


User provided reference genes

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