Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.12G035600 Carya illinoinensis HOM05D004180 ORTHO05D005323 0.0e+00 1146.3 564 100.0
Glyma.04G192900 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1109.0 562 95.9
Gohir.D11G038900 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1109.0 563 96.3
QL10p005240 Quercus lobata HOM05D004180 ORTHO05D005323 0.0e+00 1109.0 562 96.1
Haze_07277 Corylus avellana HOM05D004180 ORTHO05D005323 0.0e+00 1106.7 564 96.3
Duzib084G0269 Durio zibethinus HOM05D004180 ORTHO05D005323 0.0e+00 1106.7 563 96.1
Potri.015G090500 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1105.1 564 95.6
Gohir.A11G035300 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1104.4 563 95.9
Manes.06G115200 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1104.4 562 95.6
COL.COLO4_09266 Corchorus olitorius HOM05D004180 ORTHO05D005323 0.0e+00 1103.6 563 95.9
Potri.012G092800 Populus trichocarpa HOM05D004180 ORTHO05D005323 0.0e+00 1101.7 564 95.4
Prupe.5G157100 Prunus persica HOM05D004180 ORTHO05D005323 0.0e+00 1101.3 565 95.4
Lj1g0008389 Lotus japonicus HOM05D004180 ORTHO05D005323 0.0e+00 1100.5 562 95.2
FAN04G2334 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1100.1 568 94.7
FAN08G3357 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1100.1 568 94.7
Thecc.03G122700 Theobroma cacao HOM05D004180 ORTHO05D005323 0.0e+00 1099.7 563 95.6
CsaV3_1G000820 Cucumis sativus L. HOM05D004180 ORTHO05D005323 0.0e+00 1099.3 565 95.4
MD14G1163700 Malus domestica HOM05D004180 ORTHO05D005323 0.0e+00 1099.3 563 95.4
Sed0010285 Sechium edule HOM05D004180 ORTHO05D005323 0.0e+00 1099.0 565 95.6
FvH4_5g07340 Fragaria vesca HOM05D004180 ORTHO05D005323 0.0e+00 1098.6 568 94.5
Glyma.06G173000 Glycine max HOM05D004180 ORTHO05D005323 0.0e+00 1098.6 562 95.0
Manes.14G055300 Manihot esculenta HOM05D004180 ORTHO05D005323 0.0e+00 1098.6 563 94.8
Atru.chr9.1011 Acer truncatum HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 562 94.3
FAN18G2865 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1097.8 568 94.4
TWI14G0632 Tripterygium wilfordii HOM05D004180 ORTHO05D005323 0.0e+00 1097.4 562 95.6
Eucgr.B00149 Eucalyptus grandis HOM05D004180 ORTHO05D005323 0.0e+00 1097.0 563 94.8
Ca_16090_v3 Cicer arietinum L. HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 562 94.8
MELO3C026234.2 Cucumis melo HOM05D004180 ORTHO05D005323 0.0e+00 1096.6 565 95.4
Lalb_Chr08g0236941 Lupinus albus HOM05D004180 ORTHO05D005323 0.0e+00 1095.9 558 95.9
Cpa.g.sc4.68 Carica papaya HOM05D004180 ORTHO05D005323 0.0e+00 1095.5 563 95.2
CANSAT80G2894 Cannabis sativa HOM05D004180 ORTHO05D005323 0.0e+00 1095.1 563 94.8
Ciclev10019518m.g Citrus clementina HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 565 94.5
VMungo1309G1699 Vigna mungo HOM05D004180 ORTHO05D005323 0.0e+00 1094.7 558 95.2
Psat6g217640 Pisum sativum HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 562 94.5
Hund05645 Selenicereus undatus HOM05D004180 ORTHO05D005323 0.0e+00 1094.3 562 94.8
Cc04_g10350 Coffea canephora HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 562 95.2
FAN13G2268 Fragaria x ananassa HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 566 94.3
Gohir.A07G053600 Gossypium hirsutum HOM05D004180 ORTHO05D005323 0.0e+00 1094.0 563 95.0
RcHm_v2.0_Chr7g0191201 Rosa chinensis HOM05D004180 ORTHO05D005323 0.0e+00 1093.6 566 94.5
Phvul.009G168900 Phaseolus vulgaris HOM05D004180 ORTHO05D005323 0.0e+00 1093.2 558 95.0
TPR.G3286 Trifolium pratense HOM05D004180 ORTHO05D005323 0.0e+00 1092.0 562 94.0
Oeu037582.1 Olea europaea HOM05D004180 ORTHO05D005323 0.0e+00 1091.6 562 94.1
CSS0024351 Camellia sinensis var. sinensis HOM05D004180 ORTHO05D005323 0.0e+00 1091.3 562 94.5
Gorai.007G041800 Gossypium raimondii HOM05D004180 ORTHO05D005323 0.0e+00 1090.9 595 90.9
Medtr1g107255 Medicago truncatula HOM05D004180 ORTHO05D005323 0.0e+00 1090.9 562 94.1
Hma1.2p1_0046F.1_g027540 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 0.0e+00 1090.1 557 95.2
Solyc03g110910.4 Solanum lycopersicum HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 561 94.7
Sopen03g030100 Solanum pennellii HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 561 94.5
PGSC0003DMG401015202 Solanum tuberosum HOM05D004180 ORTHO05D005323 0.0e+00 1089.7 561 94.7
THA.LOC104811605 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1088.6 564 94.0
arahy.Tifrunner.gnm1.ann1.Y3SZAS Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1085.9 559 94.1
ClCG06G017620 Citrullus lanatus HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 601 90.3
TAR622G0515 Trochodendron aralioides HOM05D004180 ORTHO05D005323 0.0e+00 1083.2 562 93.4
Rhsim12G0172100 Rhododendron simsii HOM05D004180 ORTHO05D005323 0.0e+00 1080.5 562 93.8
THA.LOC104803140 Tarenaya hassleriana HOM05D004180 ORTHO05D005323 0.0e+00 1079.7 562 93.6
HanXRQChr02g0035141 Helianthus annuus HOM05D004180 ORTHO05D005323 0.0e+00 1079.3 563 93.1
Aa31LG3G5910 Aethionema arabicum HOM05D004180 ORTHO05D005323 0.0e+00 1078.9 564 92.9
AUR62001277 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1078.2 561 92.9
Sabra12G0067400 Salix brachista HOM05D004180 ORTHO05D005323 0.0e+00 1077.8 619 86.9
MSTRG.22929 Avicennia marina HOM05D004180 ORTHO05D005323 0.0e+00 1077.4 562 92.9
AUR62025729 Chenopodium quinoa HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 561 92.7
Lsat_1_v5_gn_1_8721 Lactuca sativa HOM05D004180 ORTHO05D005323 0.0e+00 1077.0 563 92.9
CARHR258210 Cardamine hirsuta HOM05D004180 ORTHO05D005323 0.0e+00 1076.6 565 92.2
arahy.Tifrunner.gnm1.ann1.598RU2 Arachis hypogaea HOM05D004180 ORTHO05D005323 0.0e+00 1075.8 580 90.7
Nn3g16580 Nelumbo nucifera HOM05D004180 ORTHO05D005323 7.7e-312 1072.8 562 93.2
Thhalv10013124m.g Eutrema salsugineum HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 564 91.8
Sp6g12400 Schrenkiella parvula HOM05D004180 ORTHO05D005323 3.5e-311 1070.8 565 91.5
C03p33510 Brassica napus HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 564 91.7
BolC3t15672H Brassica oleracea HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 564 91.7
ECA247G0271 Erigeron canadensis HOM05D004180 ORTHO05D005323 4.6e-311 1070.5 565 92.4
Carub.0008s1036 Capsella rubella HOM05D004180 ORTHO05D005323 5.8e-311 1070.1 564 91.7
Ah.08g218120 Amaranthus hybridus HOM05D004180 ORTHO05D005323 1.3e-310 1068.9 561 92.2
AT5G50320 Arabidopsis thaliana HOM05D004180 ORTHO05D005323 2.2e-310 1068.1 564 91.5
AL8G24380 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 2.9e-310 1067.8 564 91.3
unitig_22.g5936 Utricularia gibba HOM05D004180 ORTHO05D005323 1.4e-309 1065.4 562 91.3
EL10Ac7g18073 Beta vulgaris HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 561 91.8
A03p27780 Brassica napus HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 564 91.1
BraA03t11989Z Brassica rapa HOM05D004180 ORTHO05D005323 1.9e-309 1065.1 564 91.1
PSO063G5665 Papaver somniferum HOM05D004180 ORTHO05D005323 2.1e-308 1061.6 558 90.9
ATR0824G280 Amborella trichopoda HOM05D004180 ORTHO05D005323 4.7e-308 1060.4 565 91.7
Oeu044608.1 Olea europaea HOM05D004180 ORTHO05D005323 1.8e-307 1058.5 562 91.8
Lj5C100T5 Lonicera japonica HOM05D004180 ORTHO05D005323 6.3e-305 1050.0 592 87.8
Zm00001eb079280 Zea mays HOM05D004180 ORTHO05D005323 6.3e-305 1050.0 569 90.2
Os04g0484900 Oryza sativa ssp. japonica HOM05D004180 ORTHO05D005323 7.0e-304 1046.6 551 92.2
HPP92_004592 Vanilla planifolia HOM05D004180 ORTHO05D005323 7.0e-304 1046.6 560 91.8
Zm00001eb425150 Zea mays HOM05D004180 ORTHO05D005323 2.9e-302 1041.2 570 89.1
CAN.G352.60 Capsicum annuum HOM05D004180 ORTHO05D005323 1.6e-300 1035.4 521 96.4
Mapoly0095s0008 Marchantia polymorpha HOM05D004180 ORTHO05D005323 4.7e-300 1033.9 557 88.3
Migut.I00474 Erythranthe guttata HOM05D004180 ORTHO05D005323 3.0e-299 1031.2 572 89.0
Pp3c18_6090 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.8e-296 1021.9 555 88.6
Eucgr.L01338 Eucalyptus grandis HOM05D004180 ORTHO05D005323 4.1e-296 1020.8 563 89.9
SMO137G0131 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.5e-293 1010.4 557 86.5
SMO170G0003 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.5e-293 1010.4 557 86.5
AagrBONN_evm.TU.Sc2ySwM_344.3483 Anthoceros agrestis HOM05D004180 ORTHO05D005323 4.7e-292 1007.3 542 88.6
BcaB01g02900 Brassica carinata HOM05D004180 ORTHO05D005323 2.5e-285 984.9 521 91.4
Nn4g22462 Nelumbo nucifera HOM05D004180 ORTHO05D005323 6.6e-278 960.3 496 94.2
CDE02G3278 Ceratophyllum demersum HOM05D004180 ORTHO05D005323 9.5e-277 956.4 487 94.0
GSVIVG01007544001 Vitis vinifera HOM05D004180 ORTHO05D005323 6.8e-267 923.7 454 97.4
BcaC01g04814 Brassica carinata HOM05D004180 ORTHO05D005323 2.6e-266 921.8 564 82.1
MCO06G075 Micromonas commoda HOM05D004180 ORTHO05D005323 1.2e-263 912.9 540 80.9
Cre07.g354100 Chlamydomonas reinhardtii HOM05D004180 ORTHO05D005323 1.3e-249 866.3 543 77.5
vmacro16709 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 3.2e-240 835.1 562 76.0
Hma1.2p1_0046F.1_g027550 Hydrangea macrophylla HOM05D004180 ORTHO05D005323 1.4e-235 819.7 420 95.2
FvH4_5g07450 Fragaria vesca HOM05D004180 ORTHO05D005323 3.1e-235 818.5 530 79.8
Sc10g0010340 Simmondsia chinensis HOM05D004180 ORTHO05D005323 5.3e-235 817.8 406 96.8
vmacro16658 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 2.0e-234 815.8 564 75.0
Nitab4.5_0001311g0030 Nicotiana tabacum HOM05D004180 ORTHO05D005323 5.6e-229 797.7 521 78.7
Nitab4.5_0011188g0020 Nicotiana tabacum HOM05D004180 ORTHO05D005323 1.4e-227 793.1 521 78.3
vmacro23155 Vaccinium macrocarpon HOM05D004180 ORTHO05D005323 1.1e-224 783.5 562 72.4
SGA_v2.0_scaffold338G49249 Striga asiatica HOM05D004180 ORTHO05D005323 5.1e-222 774.6 558 72.6
SMO137G0321 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.5e-221 773.1 504 75.6
Actinidia19386 Actinidia chinensis HOM05D004180 ORTHO05D005323 7.4e-221 770.8 559 73.2
Dinv38470 Davidia involucrata HOM05D004180 ORTHO05D005323 1.7e-217 759.6 389 94.9
Pp3c21_15940 Physcomitrium patens HOM05D004180 ORTHO05D005323 1.3e-209 733.4 553 68.2
MBI11_g17238_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 1.4e-195 686.8 503 71.8
PGR083G1171 Punica granatum HOM05D004180 ORTHO05D005323 1.0e-190 670.6 329 97.3
CBR_g17965 Chara braunii HOM05D004180 ORTHO05D005323 2.7e-170 602.8 312 91.3
Aqoxy3G01433 Aquilegia oxysepala HOM05D004180 ORTHO05D005323 8.6e-161 571.2 511 61.6
SalBow5G4699 Salvia bowleyana HOM05D004180 ORTHO05D005323 4.7e-151 538.9 555 56.0
Gorai.003G153300 Gossypium raimondii HOM05D004180 ORTHO05D005323 2.9e-148 529.6 262 96.6
Actinidia16192 Actinidia chinensis HOM05D004180 ORTHO05D005323 3.5e-138 496.1 300 83.3
SMO170G0065 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.0e-137 494.6 462 58.0
Gorai.001G061500 Gossypium raimondii HOM05D004180 ORTHO05D005323 9.9e-133 478.0 258 91.9
Cfa018893 Carpinus fangiana HOM05D004180 ORTHO05D005323 1.2e-130 471.1 565 51.2
MBI11_g36312_MAGBIO Magnolia biondii HOM05D004180 ORTHO05D005323 3.9e-129 466.1 505 53.7
MD06G1152200 Malus domestica HOM05D004180 ORTHO05D005323 3.3e-128 463.0 385 64.9
BcaB01g02898 Brassica carinata HOM05D004180 ORTHO05D001269 2.1e-127 460.3 293 79.2
Peaxi162Scf00089g00242 Petunia axillaris HOM05D004180 ORTHO05D005323 1.1e-126 458.0 561 49.7
SMO137G0375 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 3.5e-122 443.0 499 50.3
Gohir.D07G057966 Gossypium hirsutum HOM05D004180 ORTHO05D005323 1.1e-118 431.4 237 91.6
DCAR_025596 Daucus carota HOM05D004180 ORTHO05D005323 7.1e-115 418.7 350 63.7
SEGI_10248 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 3.4e-109 399.8 196 95.9
MD06G1156700 Malus domestica HOM05D004180 ORTHO05D005323 1.1e-99 368.2 246 76.8
SalBow5G4032 Salvia bowleyana HOM05D004180 ORTHO05D005323 3.0e-97 360.1 267 69.3
MD06G1155900 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-96 356.3 294 67.0
SMO170G0034 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 1.1e-94 351.7 214 79.4
Gohir.D07G058032 Gossypium hirsutum HOM05D004180 ORTHO05D005323 4.5e-93 346.3 167 98.8
SMO170G0001 Selaginella moellendorffii HOM05D004180 ORTHO05D005323 5.5e-91 339.3 183 86.3
MD06G1153400 Malus domestica HOM05D004180 ORTHO05D005323 1.8e-89 334.3 315 61.3
CAN.G1231.25 Capsicum annuum HOM05D004180 ORTHO05D005323 5.9e-85 319.3 154 96.8
SEGI_27035 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.5e-84 315.5 160 92.5
Dinv38471 Davidia involucrata HOM05D004180 ORTHO05D005323 1.6e-82 311.2 156 94.9
Sabra15G0112600 Salix brachista HOM05D004180 ORTHO05D005323 7.2e-75 285.8 176 83.5
AL664U10020 Arabidopsis lyrata HOM05D004180 ORTHO05D005323 8.5e-68 262.3 159 81.1
SEGI_32601 Sequoiadendron giganteum HOM05D004180 ORTHO05D005323 8.8e-65 252.3 152 82.9
MD06G1155000 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-54 216.5 123 88.6
CBR_g17964 Chara braunii HOM05D004180 ORTHO05D005323 3.6e-50 203.8 126 79.4
FvH4_5g07410 Fragaria vesca HOM05D004180 ORTHO05D005323 3.0e-49 200.7 105 91.4
MD06G1155400 Malus domestica HOM05D004180 ORTHO05D005323 2.4e-46 191.0 113 85.8
SalBow5G1916 Salvia bowleyana HOM05D004180 ORTHO05D005323 2.9e-44 184.1 134 69.4
SMO137G0281 Selaginella moellendorffii HOM05D004180 ORTHO05D020683 1.5e-43 181.8 277 43.3
RcHm_v2.0_Chr5g0026811 Rosa chinensis HOM05D004180 ORTHO05D005323 1.1e-33 149.1 98 78.6
FAN22G0033 Fragaria x ananassa HOM05D004180 ORTHO05D020683 6.4e-31 139.8 143 56.6
MD06G1154300 Malus domestica HOM05D004180 ORTHO05D005323 1.7e-28 131.7 75 88.0
CAN.G1231.26 Capsicum annuum HOM05D004180 ORTHO05D005323 3.3e-27 127.5 73 89.0
FvH4_3g25041 Fragaria vesca HOM05D004180 ORTHO05D020683 5.8e-24 116.7 86 72.1
MD06G1155200 Malus domestica HOM05D004180 ORTHO05D005323 5.4e-22 110.2 55 96.4
MD06G1156800 Malus domestica HOM05D004180 ORTHO05D005323 4.3e-19 100.5 58 84.5
MD00G1134500 Malus domestica HOM05D004180 ORTHO05D005323 8.9e-17 92.8 63 73.0
MD06G1152600 Malus domestica HOM05D004180 ORTHO05D020683 1.5e-16 92.0 49 91.8
MD06G1154500 Malus domestica HOM05D004180 ORTHO05D005323 1.5e-16 92.0 47 91.5
Actinidia19390 Actinidia chinensis HOM05D004180 ORTHO05D005323 5.8e-16 90.1 52 84.6
Migut.I00277 Erythranthe guttata HOM05D004180 ORTHO05D005323 1.7e-15 88.6 88 61.4
MD06G1155500 Malus domestica HOM05D004180 ORTHO05D005323 2.9e-15 87.8 44 88.6
MD06G1155100 Malus domestica HOM05D004180 ORTHO05D005323 4.2e-14 84.0 59 69.5
MD06G1154200 Malus domestica HOM05D004180 ORTHO05D020683 4.6e-13 80.5 60 73.3
MD06G1152100 Malus domestica HOM05D004180 ORTHO05D020683 6.0e-13 80.1 49 81.6
MD06G1156600 Malus domestica HOM05D004180 ORTHO05D020683 7.6e-08 63.2 51 68.6


User provided reference genes

Program Settings