Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G130000 Carya illinoinensis HOM05D005196 ORTHO05D006107 4.4e-144 514.6 258 100.0
Haze_08760 Corylus avellana HOM05D005196 ORTHO05D006107 9.5e-107 390.6 230 85.7
CiPaw.12G089400 Carya illinoinensis HOM05D005196 ORTHO05D006107 2.9e-103 379.0 230 83.0
Cfa012239 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.3e-100 369.4 291 67.7
QL12p031809 Quercus lobata HOM05D005196 ORTHO05D006107 5.2e-97 358.2 195 89.2
LjContig00312_ERROPOS870357g0014232 Lotus japonicus HOM05D005196 ORTHO05D006107 1.3e-92 343.6 241 74.3
CANSAT21G0568 Cannabis sativa HOM05D005196 ORTHO05D006107 2.3e-92 342.8 245 75.5
Hund11434 Selenicereus undatus HOM05D005196 ORTHO05D006107 6.6e-92 341.3 238 74.8
CAN.G532.37 Capsicum annuum HOM05D005196 ORTHO05D006107 1.1e-91 340.5 233 75.1
Phvul.002G159900 Phaseolus vulgaris HOM05D005196 ORTHO05D006107 1.5e-91 340.1 234 74.4
Nn1g01669 Nelumbo nucifera HOM05D005196 ORTHO05D006107 1.9e-91 339.7 242 74.0
Nitab4.5_0007906g0030 Nicotiana tabacum HOM05D005196 ORTHO05D006107 1.9e-91 339.7 242 72.3
Ah.12g051910 Amaranthus hybridus HOM05D005196 ORTHO05D006107 4.3e-91 338.6 230 74.8
Cpa.g.sc631.3 Carica papaya HOM05D005196 ORTHO05D006107 4.3e-91 338.6 188 89.4
Nitab4.5_0003015g0100 Nicotiana tabacum HOM05D005196 ORTHO05D006107 5.6e-91 338.2 239 72.8
Potri.001G099300 Populus trichocarpa HOM05D005196 ORTHO05D006107 9.5e-91 337.4 219 76.3
MD14G1111600 Malus domestica HOM05D005196 ORTHO05D006107 1.2e-90 337.0 247 71.7
MELO3C016339.2 Cucumis melo HOM05D005196 ORTHO05D006107 4.7e-90 335.1 239 74.5
Sed0013368 Sechium edule HOM05D005196 ORTHO05D006107 4.7e-90 335.1 234 72.6
GSVIVG01019415001 Vitis vinifera HOM05D005196 ORTHO05D006107 6.2e-90 334.7 183 88.0
Glyma.11G021400 Glycine max HOM05D005196 ORTHO05D006107 1.1e-89 334.0 231 75.3
Duzib205G0943 Durio zibethinus HOM05D005196 ORTHO05D006107 1.8e-89 333.2 236 73.7
Duzib068G0196 Durio zibethinus HOM05D005196 ORTHO05D006107 2.3e-89 332.8 248 71.0
Gohir.D03G078300 Gossypium hirsutum HOM05D005196 ORTHO05D006107 2.3e-89 332.8 245 71.0
Gorai.003G085800 Gossypium raimondii HOM05D005196 ORTHO05D006107 2.3e-89 332.8 245 71.0
Peaxi162Scf00074g01724 Petunia axillaris HOM05D005196 ORTHO05D006107 2.3e-89 332.8 232 73.3
Solyc08g081570.3 Solanum lycopersicum HOM05D005196 ORTHO05D006107 2.3e-89 332.8 236 72.9
Gohir.A02G105500 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.0e-89 332.0 243 71.2
COL.COLO4_08364 Corchorus olitorius HOM05D005196 ORTHO05D006107 5.2e-89 331.6 244 72.1
PGSC0003DMG400012185 Solanum tuberosum HOM05D005196 ORTHO05D006107 5.2e-89 331.6 234 71.8
MSTRG.11956 Avicennia marina HOM05D005196 ORTHO05D006107 8.9e-89 330.9 206 79.1
Medtr5g010010 Medicago truncatula HOM05D005196 ORTHO05D006107 8.9e-89 330.9 207 77.3
Sopen08g029880 Solanum pennellii HOM05D005196 ORTHO05D006107 8.9e-89 330.9 235 72.3
Prupe.5G106300 Prunus persica HOM05D005196 ORTHO05D006107 1.2e-88 330.5 242 71.5
TAR636G2140 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.2e-88 330.5 181 89.0
Ciclev10021991m.g Citrus clementina HOM05D005196 ORTHO05D006107 2.6e-88 329.3 225 74.2
Manes.02G017610 Manihot esculenta HOM05D005196 ORTHO05D006107 5.8e-88 328.2 205 80.0
Thecc.03G286300 Theobroma cacao HOM05D005196 ORTHO05D006107 5.8e-88 328.2 177 88.7
Potri.003G132400 Populus trichocarpa HOM05D005196 ORTHO05D006107 7.6e-88 327.8 240 71.7
Sabra03G0094900 Salix brachista HOM05D005196 ORTHO05D006107 7.6e-88 327.8 238 72.7
SGA_v2.0_scaffold111G31472 Striga asiatica HOM05D005196 ORTHO05D006107 7.6e-88 327.8 240 71.2
arahy.Tifrunner.gnm1.ann1.RG9U10 Arachis hypogaea HOM05D005196 ORTHO05D006107 9.9e-88 327.4 210 78.1
ClCG07G007880 Citrullus lanatus HOM05D005196 ORTHO05D006107 9.9e-88 327.4 237 70.9
CsaV3_4G006100 Cucumis sativus L. HOM05D005196 ORTHO05D006107 9.9e-88 327.4 234 71.4
PGR031G3114 Punica granatum HOM05D005196 ORTHO05D006107 9.9e-88 327.4 221 75.6
AUR62010748 Chenopodium quinoa HOM05D005196 ORTHO05D006107 1.3e-87 327.0 186 87.1
Ca_24538_v3 Cicer arietinum L. HOM05D005196 ORTHO05D006107 1.3e-87 327.0 231 71.0
Lsat_1_v5_gn_6_84980 Lactuca sativa HOM05D005196 ORTHO05D006107 2.2e-87 326.2 187 84.5
MD06G1090700 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-87 326.2 243 71.2
RcHm_v2.0_Chr7g0196611 Rosa chinensis HOM05D005196 ORTHO05D006107 2.2e-87 326.2 235 73.2
FAN08G3453 Fragaria x ananassa HOM05D005196 ORTHO05D006107 2.9e-87 325.9 240 69.2
HanXRQChr03g0085971 Helianthus annuus HOM05D005196 ORTHO05D006107 3.7e-87 325.5 216 75.9
Eucgr.E00780 Eucalyptus grandis HOM05D005196 ORTHO05D006107 4.9e-87 325.1 223 73.1
Migut.A00721 Erythranthe guttata HOM05D005196 ORTHO05D006107 8.4e-87 324.3 235 72.3
DCAR_005572 Daucus carota HOM05D005196 ORTHO05D006107 1.1e-86 323.9 236 72.5
TWI81G1086 Tripterygium wilfordii HOM05D005196 ORTHO05D006107 1.1e-86 323.9 185 85.4
Sabra01G0074500 Salix brachista HOM05D005196 ORTHO05D006107 2.4e-86 322.8 186 83.3
CSS0021900 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 3.2e-86 322.4 241 71.0
FvH4_5g03170 Fragaria vesca HOM05D005196 ORTHO05D006107 4.1e-86 322.0 231 71.0
MSTRG.13860 Avicennia marina HOM05D005196 ORTHO05D006107 5.4e-86 321.6 235 70.2
FAN13G1103 Fragaria x ananassa HOM05D005196 ORTHO05D006107 5.4e-86 321.6 231 71.0
FAN18G0698 Fragaria x ananassa HOM05D005196 ORTHO05D006107 7.1e-86 321.2 180 83.3
PSO478G4030 Papaver somniferum HOM05D005196 ORTHO05D006107 7.1e-86 321.2 178 87.1
PSO782G4831 Papaver somniferum HOM05D005196 ORTHO05D006107 7.1e-86 321.2 178 87.1
FAN04G1400 Fragaria x ananassa HOM05D005196 ORTHO05D006107 9.2e-86 320.9 227 71.4
Hma1.2p1_0377F.1_g139550 Hydrangea macrophylla HOM05D005196 ORTHO05D006107 9.2e-86 320.9 198 80.8
AL2G11140 Arabidopsis lyrata HOM05D005196 ORTHO05D006107 1.2e-85 320.5 196 78.6
Aqoxy7G00203 Aquilegia oxysepala HOM05D005196 ORTHO05D006107 2.1e-85 319.7 181 84.5
Sp2g00720 Schrenkiella parvula HOM05D005196 ORTHO05D006107 2.7e-85 319.3 234 69.7
Cc08_g15230 Coffea canephora HOM05D005196 ORTHO05D006107 4.6e-85 318.5 201 77.1
AT1G63970 Arabidopsis thaliana HOM05D005196 ORTHO05D006107 1.0e-84 317.4 231 71.0
unitig_37.g12237 Utricularia gibba HOM05D005196 ORTHO05D006107 1.0e-84 317.4 233 71.2
Aa31LG2G1060 Aethionema arabicum HOM05D005196 ORTHO05D006107 1.7e-84 316.6 191 81.7
Gorai.004G137800 Gossypium raimondii HOM05D005196 ORTHO05D006107 3.0e-84 315.8 236 69.5
Lj2A178G47 Lonicera japonica HOM05D005196 ORTHO05D006107 3.9e-84 315.5 245 67.3
SalBow8G4511 Salvia bowleyana HOM05D005196 ORTHO05D006107 3.9e-84 315.5 242 67.8
BraA09t37052Z Brassica rapa HOM05D005196 ORTHO05D006107 5.1e-84 315.1 200 79.0
Carub.0002s0087 Capsella rubella HOM05D005196 ORTHO05D006107 6.6e-84 314.7 234 70.5
SGA_v2.0_scaffold144G35903 Striga asiatica HOM05D005196 ORTHO05D006107 6.6e-84 314.7 216 73.6
THA.LOC104823600 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 6.6e-84 314.7 227 73.1
A09p14050 Brassica napus HOM05D005196 ORTHO05D006107 8.6e-84 314.3 238 71.0
CARHR047010 Cardamine hirsuta HOM05D005196 ORTHO05D006107 1.1e-83 313.9 187 82.4
Lalb_Chr09g0320831 Lupinus albus HOM05D005196 ORTHO05D006107 1.1e-83 313.9 177 84.2
BcaB07g31421 Brassica carinata HOM05D005196 ORTHO05D006107 1.5e-83 313.5 246 67.5
C09p16940 Brassica napus HOM05D005196 ORTHO05D006107 1.5e-83 313.5 236 69.9
Oeu042360.2 Olea europaea HOM05D005196 ORTHO05D006107 1.9e-83 313.2 255 65.9
A09p15170 Brassica napus HOM05D005196 ORTHO05D006107 3.3e-83 312.4 235 69.8
Sc01g0009830 Simmondsia chinensis HOM05D005196 ORTHO05D006107 3.3e-83 312.4 171 84.8
Actinidia10607 Actinidia chinensis HOM05D005196 ORTHO05D006107 4.3e-83 312.0 180 84.4
BraA09t37159Z Brassica rapa HOM05D005196 ORTHO05D006107 4.3e-83 312.0 235 69.4
BolC9t54591H Brassica oleracea HOM05D005196 ORTHO05D006107 5.6e-83 311.6 199 77.9
BcaC04g22662 Brassica carinata HOM05D005196 ORTHO05D006107 7.3e-83 311.2 237 69.6
Rhsim02G0235500 Rhododendron simsii HOM05D005196 ORTHO05D006107 7.3e-83 311.2 165 89.1
BcaB07g31533 Brassica carinata HOM05D005196 ORTHO05D006107 2.8e-82 309.3 239 67.8
C09p18370 Brassica napus HOM05D005196 ORTHO05D006107 3.6e-82 308.9 235 70.2
BolC9t54730H Brassica oleracea HOM05D005196 ORTHO05D006107 3.6e-82 308.9 235 70.2
Gohir.D08G134600 Gossypium hirsutum HOM05D005196 ORTHO05D006107 3.6e-82 308.9 243 67.5
ATR0661G112 Amborella trichopoda HOM05D005196 ORTHO05D006107 4.7e-82 308.5 167 87.4
BcaC04g22518 Brassica carinata HOM05D005196 ORTHO05D006107 1.4e-81 307.0 234 69.7
SMO118G0129 Selaginella moellendorffii HOM05D005196 ORTHO05D006107 1.8e-81 306.6 211 71.1
HPP92_025411 Vanilla planifolia HOM05D005196 ORTHO05D006107 1.8e-81 306.6 230 69.1
SEGI_33828 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 3.1e-81 305.8 184 81.5
THA.LOC104809368 Tarenaya hassleriana HOM05D005196 ORTHO05D006107 3.1e-81 305.8 186 79.6
Os02g0680600 Oryza sativa ssp. japonica HOM05D005196 ORTHO05D006107 4.0e-81 305.4 232 67.7
ECA240G2051 Erigeron canadensis HOM05D000662 ORTHO05D000597 7.6e-80 301.2 174 82.8
arahy.Tifrunner.gnm1.ann1.072U0I Arachis hypogaea HOM05D005196 ORTHO05D006107 6.4e-79 298.1 233 69.1
Pp3c3_18960 Physcomitrium patens HOM05D005196 ORTHO05D006107 1.1e-78 297.4 182 79.7
Mapoly0107s0035 Marchantia polymorpha HOM05D005196 ORTHO05D006107 1.9e-78 296.6 184 78.8
EL10Ac5g12833 Beta vulgaris HOM05D005196 ORTHO05D006107 6.0e-77 291.6 265 62.3
Eucgr.L03318 Eucalyptus grandis HOM05D005196 ORTHO05D006107 1.9e-75 286.6 201 70.6
CBR_g41628 Chara braunii HOM05D005196 ORTHO05D006107 3.1e-73 279.3 231 61.5
TPR.G6615 Trifolium pratense HOM05D005196 ORTHO05D006107 2.0e-72 276.6 242 62.4
Ah.07g196720 Amaranthus hybridus HOM05D005196 ORTHO05D006107 7.6e-72 274.6 221 68.8
Dinv37598 Davidia involucrata HOM05D005196 ORTHO05D006107 1.1e-70 270.8 217 65.9
Cre12.g503550 Chlamydomonas reinhardtii HOM05D005196 ORTHO05D006107 3.5e-69 265.8 187 69.0
vmacro11408 Vaccinium macrocarpon HOM05D005196 ORTHO05D006107 1.1e-67 260.8 207 68.1
PRCOL_00001316 Prasinoderma coloniale HOM05D005196 ORTHO05D006107 3.3e-67 259.2 159 71.1
Cfa012243 Carpinus fangiana HOM05D005196 ORTHO05D006107 2.4e-65 253.1 157 79.6
SEGI_11641 Sequoiadendron giganteum HOM05D005196 ORTHO05D006107 2.0e-64 250.0 183 69.9
MCO02G159 Micromonas commoda HOM05D005196 ORTHO05D006107 5.8e-64 248.4 198 61.6
Actinidia28347 Actinidia chinensis HOM05D005196 ORTHO05D006107 8.7e-60 234.6 209 62.7
Atru.chr9.2118 Acer truncatum HOM05D005196 ORTHO05D006107 4.3e-59 232.3 122 91.8
CDE11G0665 Ceratophyllum demersum HOM05D005196 ORTHO05D006107 1.4e-49 200.7 179 60.3
Psat2g183400 Pisum sativum HOM05D005196 ORTHO05D006107 2.2e-47 193.4 157 63.7
TAR629G0373 Trochodendron aralioides HOM05D005196 ORTHO05D006107 5.5e-46 188.7 169 62.1
Sed0007168 Sechium edule HOM05D005196 ORTHO05D006107 6.7e-44 181.8 112 79.5
Zm00001eb250670 Zea mays HOM05D005196 ORTHO05D006107 5.3e-41 172.2 95 84.2
Zm00001eb187250 Zea mays HOM05D005196 ORTHO05D006107 6.9e-41 171.8 153 60.1
C04p29780 Brassica napus HOM05D005196 ORTHO05D006107 7.7e-40 168.3 104 77.9
BcaC02g10359 Brassica carinata HOM05D005196 ORTHO05D006107 1.0e-39 167.9 104 76.9
Cfa012242 Carpinus fangiana HOM05D005196 ORTHO05D006107 4.8e-34 149.1 82 90.2
Gohir.A08G114400 Gossypium hirsutum HOM05D005196 ORTHO05D006107 4.1e-33 146.0 137 57.7
VMungo0251G1828 Vigna mungo HOM05D005196 ORTHO05D006107 7.7e-32 141.7 78 88.5
AUR62019751 Chenopodium quinoa HOM05D005196 ORTHO05D006107 8.5e-31 138.3 75 93.3
PSO782G0193 Papaver somniferum HOM05D005196 ORTHO05D006107 2.5e-30 136.7 124 58.1
Haze_27119 Corylus avellana HOM05D005196 ORTHO05D006107 2.7e-29 133.3 156 38.5
TAR629G1542 Trochodendron aralioides HOM05D005196 ORTHO05D006107 1.3e-26 124.4 71 87.3
CSS0017594 Camellia sinensis var. sinensis HOM05D005196 ORTHO05D006107 5.5e-22 109.0 77 74.0
AagrBONN_evm.TU.Sc2ySwM_344.1771 Anthoceros agrestis HOM05D005196 ORTHO05D006107 7.0e-17 92.0 62 66.1
Gohir.A08G114450 Gossypium hirsutum HOM05D005196 ORTHO05D006107 7.7e-16 88.6 49 81.6
BolC4t24512H Brassica oleracea HOM05D005196 ORTHO05D006107 1.3e-15 87.8 92 53.3
MD06G1092700 Malus domestica HOM05D005196 ORTHO05D006107 1.9e-14 84.0 116 48.3
Hund14271 Selenicereus undatus HOM05D007428 ORTHO05D009308 6.3e-10 68.9 42 76.2
MD13G1222800 Malus domestica HOM05D005196 ORTHO05D006107 4.1e-09 66.2 47 63.8
C04p29790 Brassica napus HOM05D005196 ORTHO05D006107 1.3e-07 61.2 28 89.3
BolC4t24513H Brassica oleracea HOM05D005196 ORTHO05D006107 1.3e-07 61.2 28 89.3
MD14G1120300 Malus domestica HOM05D005196 ORTHO05D006107 2.2e-07 60.5 54 55.6


User provided reference genes

Program Settings