Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.11G072100 Carya illinoinensis HOM05D001887 ORTHO05D006549 0.0e+00 1916.7 1007 100.0
Cfa012332 Carpinus fangiana HOM05D001887 ORTHO05D006549 0.0e+00 1542.3 989 84.1
Haze_08360 Corylus avellana HOM05D001887 ORTHO05D006549 0.0e+00 1535.4 993 82.9
QL12p008620 Quercus lobata HOM05D001887 ORTHO05D006549 0.0e+00 1497.6 987 80.9
Prupe.5G054900 Prunus persica HOM05D001887 ORTHO05D006549 0.0e+00 1384.8 1044 73.0
Glyma.11G038500 Glycine max HOM05D001887 ORTHO05D006549 0.0e+00 1375.1 997 74.1
RcHm_v2.0_Chr7g0205791 Rosa chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1374.8 1044 71.9
MD06G1046600 Malus domestica HOM05D001887 ORTHO05D006549 0.0e+00 1360.9 1064 70.5
VMungo1215G0420 Vigna mungo HOM05D001887 ORTHO05D006549 0.0e+00 1357.0 996 73.9
FvH4_5g20470 Fragaria vesca HOM05D001887 ORTHO05D006549 0.0e+00 1350.1 1043 70.9
Ca_24613_v3 Cicer arietinum L. HOM05D001887 ORTHO05D006549 0.0e+00 1349.7 1048 69.5
Ciclev10024418m.g Citrus clementina HOM05D001887 ORTHO05D006549 0.0e+00 1348.6 1007 72.0
TWI81G0509 Tripterygium wilfordii HOM05D001887 ORTHO05D006549 0.0e+00 1348.2 992 72.3
Lj2g0012346 Lotus japonicus HOM05D001887 ORTHO05D006549 0.0e+00 1345.5 992 72.6
CANSAT21G2194 Cannabis sativa HOM05D001887 ORTHO05D006549 0.0e+00 1342.4 991 72.9
Potri.001G150400 Populus trichocarpa HOM05D001887 ORTHO05D006549 0.0e+00 1342.0 1000 72.8
CsaV3_3G049790 Cucumis sativus L. HOM05D001887 ORTHO05D006549 0.0e+00 1339.7 1040 70.3
Actinidia02198 Actinidia chinensis HOM05D001887 ORTHO05D006549 0.0e+00 1339.3 995 72.7
Medtr5g013480 Medicago truncatula HOM05D001887 ORTHO05D006549 0.0e+00 1338.9 992 72.1
FAN18G1605 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1335.1 1038 70.4
Lalb_Chr09g0324141 Lupinus albus HOM05D001887 ORTHO05D006549 0.0e+00 1334.7 993 72.7
ClCG09G012670 Citrullus lanatus HOM05D001887 ORTHO05D006549 0.0e+00 1333.2 1045 70.0
TAR636G0264 Trochodendron aralioides HOM05D001887 ORTHO05D006549 0.0e+00 1325.5 994 72.2
Thecc.03G239300 Theobroma cacao HOM05D001887 ORTHO05D006549 0.0e+00 1317.8 994 70.7
MELO3C003338.2 Cucumis melo HOM05D001887 ORTHO05D006549 0.0e+00 1314.7 1053 68.5
Sed0013079 Sechium edule HOM05D001887 ORTHO05D006549 0.0e+00 1310.4 1037 69.1
arahy.Tifrunner.gnm1.ann1.B9CQCD Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1308.1 992 71.7
arahy.Tifrunner.gnm1.ann1.HW9JRE Arachis hypogaea HOM05D001887 ORTHO05D006549 0.0e+00 1308.1 992 71.7
vmacro00747 Vaccinium macrocarpon HOM05D001887 ORTHO05D006549 0.0e+00 1304.3 995 71.1
Manes.01G089700 Manihot esculenta HOM05D001887 ORTHO05D006549 0.0e+00 1301.6 997 70.8
Eucgr.E00349 Eucalyptus grandis HOM05D001887 ORTHO05D006549 0.0e+00 1297.0 993 72.0
GSVIVG01002051001 Vitis vinifera HOM05D001887 ORTHO05D006549 0.0e+00 1291.2 991 71.7
Gorai.004G191700 Gossypium raimondii HOM05D001887 ORTHO05D006549 0.0e+00 1285.0 994 70.0
Gohir.D08G182700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1283.9 993 70.2
Peaxi162Scf00301g00615 Petunia axillaris HOM05D001887 ORTHO05D006549 0.0e+00 1278.8 996 69.8
PGR042G1059 Punica granatum HOM05D001887 ORTHO05D006549 0.0e+00 1277.3 991 70.8
AUR62007171 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1262.7 994 68.3
Hund14477 Selenicereus undatus HOM05D001887 ORTHO05D006549 0.0e+00 1258.8 1005 69.2
Sopen08g026310 Solanum pennellii HOM05D001887 ORTHO05D006549 0.0e+00 1256.9 995 68.2
THA.LOC104807928 Tarenaya hassleriana HOM05D001887 ORTHO05D006549 0.0e+00 1256.9 999 68.2
PGSC0003DMG400026214 Solanum tuberosum HOM05D001887 ORTHO05D006549 0.0e+00 1256.1 995 68.5
Solyc08g077800.4 Solanum lycopersicum HOM05D001887 ORTHO05D006549 0.0e+00 1254.6 997 68.3
Cc08_g11250 Coffea canephora HOM05D001887 ORTHO05D006549 0.0e+00 1251.5 989 68.6
Lj8C277T15 Lonicera japonica HOM05D001887 ORTHO05D006549 0.0e+00 1251.1 1019 68.4
Thhalv10027633m.g Eutrema salsugineum HOM05D001887 ORTHO05D006549 0.0e+00 1249.6 992 67.3
AL7G48280 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 990 68.3
C04p48230 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1248.4 988 67.4
Carub.0007s3432 Capsella rubella HOM05D001887 ORTHO05D006549 0.0e+00 1247.6 988 68.1
Aqoxy7G00853 Aquilegia oxysepala HOM05D001887 ORTHO05D006549 0.0e+00 1247.3 989 68.5
BraA04t17079Z Brassica rapa HOM05D001887 ORTHO05D006549 0.0e+00 1247.3 988 67.3
Nitab4.5_0004227g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1247.3 996 68.4
BcaC02g08980 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 988 67.3
BolC4t26415H Brassica oleracea HOM05D001887 ORTHO05D006549 0.0e+00 1246.9 988 67.3
A04p14190 Brassica napus HOM05D001887 ORTHO05D006549 0.0e+00 1246.1 988 67.3
AL7G48350 Arabidopsis lyrata HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 988 68.1
Rhsim07G0136100 Rhododendron simsii HOM05D001887 ORTHO05D006549 0.0e+00 1245.0 1165 61.5
MBI04_g38561_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 0.0e+00 1244.6 1036 66.2
AT5G41150 Arabidopsis thaliana HOM05D001887 ORTHO05D006549 0.0e+00 1244.2 988 67.5
SpUn0010_0230 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1243.0 988 67.2
Nitab4.5_0003335g0030 Nicotiana tabacum HOM05D001887 ORTHO05D006549 0.0e+00 1242.3 996 68.3
Sp7g00750 Schrenkiella parvula HOM05D001887 ORTHO05D006549 0.0e+00 1239.9 988 67.2
CAN.G572.14 Capsicum annuum HOM05D001887 ORTHO05D006549 0.0e+00 1238.8 995 67.8
BcaB06g27602 Brassica carinata HOM05D001887 ORTHO05D006549 0.0e+00 1234.9 988 66.5
Nn1g00744 Nelumbo nucifera HOM05D001887 ORTHO05D006549 0.0e+00 1234.2 1020 67.2
CARHR213220 Cardamine hirsuta HOM05D001887 ORTHO05D006549 0.0e+00 1231.9 990 67.5
Duzib205G1274 Durio zibethinus HOM05D001887 ORTHO05D006549 0.0e+00 1224.2 991 67.0
HanXRQChr01g0016001 Helianthus annuus HOM05D001887 ORTHO05D006549 0.0e+00 1218.0 1001 67.4
ECA246G2103 Erigeron canadensis HOM05D001887 ORTHO05D006549 0.0e+00 1215.7 990 67.2
Aa31LG9G15130 Aethionema arabicum HOM05D001887 ORTHO05D006549 0.0e+00 1209.5 995 66.1
Migut.E01262 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1201.0 987 66.0
Migut.E01632 Erythranthe guttata HOM05D001887 ORTHO05D006549 0.0e+00 1197.2 987 66.0
EL10Ac5g12260 Beta vulgaris HOM05D001887 ORTHO05D006549 0.0e+00 1196.0 1053 64.3
Ah.07g199260 Amaranthus hybridus HOM05D001887 ORTHO05D006549 0.0e+00 1194.5 992 66.3
SGA_v2.0_scaffold6G03161 Striga asiatica HOM05D001887 ORTHO05D006549 0.0e+00 1193.3 1024 65.2
Lsat_1_v5_gn_3_15381 Lactuca sativa HOM05D001887 ORTHO05D006549 0.0e+00 1192.9 1019 64.9
PSO675G3297 Papaver somniferum HOM05D001887 ORTHO05D006549 0.0e+00 1179.9 994 65.4
DCAR_000656 Daucus carota HOM05D001887 ORTHO05D006549 0.0e+00 1164.4 980 64.5
CSS0023599 Camellia sinensis var. sinensis HOM05D001887 ORTHO05D006549 0.0e+00 1163.7 832 75.1
AUR62018833 Chenopodium quinoa HOM05D001887 ORTHO05D006549 0.0e+00 1162.9 985 64.8
FAN13G0006 Fragaria x ananassa HOM05D001887 ORTHO05D006549 0.0e+00 1162.5 886 71.4
unitig_699.g19770 Utricularia gibba HOM05D001887 ORTHO05D006549 0.0e+00 1146.7 988 63.2
Gohir.A08G162700 Gossypium hirsutum HOM05D001887 ORTHO05D006549 0.0e+00 1140.9 921 68.2
COL.COLO4_06683 Corchorus olitorius HOM05D001887 ORTHO05D006549 0.0e+00 1139.0 835 73.1
HPP92_001389 Vanilla planifolia HOM05D001887 ORTHO05D006549 0.0e+00 1122.1 997 60.3
Dinv25138 Davidia involucrata HOM05D001887 ORTHO05D006549 0.0e+00 1114.4 849 71.5
Os03g0100400 Oryza sativa ssp. japonica HOM05D001887 ORTHO05D006549 0.0e+00 1108.6 1009 61.3
Zm00001eb208390 Zea mays HOM05D001887 ORTHO05D006549 0.0e+00 1104.7 1001 61.8
CDE02G0676 Ceratophyllum demersum HOM05D001887 ORTHO05D006549 3.0e-310 1068.5 1000 61.4
MSTRG.13777 Avicennia marina HOM05D001887 ORTHO05D006549 1.2e-293 1013.4 987 59.0
Psat2g175720 Pisum sativum HOM05D001887 ORTHO05D006549 3.2e-291 1005.4 993 58.1
Oeu028057.3 Olea europaea HOM05D001887 ORTHO05D006549 4.3e-272 941.8 995 56.5
Mapoly0007s0092 Marchantia polymorpha HOM05D001887 ORTHO05D006549 4.2e-267 925.2 1068 49.3
Pp3c18_11670 Physcomitrium patens HOM05D001887 ORTHO05D006549 1.6e-266 923.3 1060 49.7
AagrBONN_evm.TU.Sc2ySwM_344.3532 Anthoceros agrestis HOM05D001887 ORTHO05D006549 2.5e-264 916.0 1013 51.4
SMO118G0017 Selaginella moellendorffii HOM05D001887 ORTHO05D006549 3.3e-256 889.0 1005 51.3
Sc01g0007960 Simmondsia chinensis HOM05D001887 ORTHO05D006549 8.2e-255 884.4 761 65.2
Phvul.002G001900 Phaseolus vulgaris HOM05D001887 ORTHO05D006549 5.0e-236 822.0 600 73.2
SalBow1G4075 Salvia bowleyana HOM05D001887 ORTHO05D006549 7.0e-222 775.0 719 60.2
Sabra01G0120200 Salix brachista HOM05D001887 ORTHO05D006549 6.5e-220 768.5 548 75.4
ATR0665G232 Amborella trichopoda HOM05D001887 ORTHO05D006549 2.1e-210 736.9 615 65.2
Hma1.2p1_3159F.1_g333410 Hydrangea macrophylla HOM05D001887 ORTHO05D006549 6.1e-210 735.3 821 54.9
MBI04_g36289_MAGBIO Magnolia biondii HOM05D001887 ORTHO05D006549 9.8e-200 701.4 959 47.3
TPR.G31429 Trifolium pratense HOM05D001887 ORTHO05D006549 2.1e-194 683.7 669 58.9
SEGI_01687 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 9.2e-174 615.1 559 59.9
MCO16G346 Micromonas commoda HOM05D001887 ORTHO05D006549 2.3e-148 530.8 989 34.0
CBR_g39228 Chara braunii HOM05D001887 ORTHO05D006549 7.9e-133 479.2 358 66.8
SHI07797 Sapria himalayana HOM05D001887 ORTHO05D006549 6.9e-129 466.1 398 62.1
Cpa.g.c28699.1 Carica papaya HOM05D001887 ORTHO05D006549 3.6e-125 453.8 269 85.9
HPP92_012638 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.7e-124 449.5 305 71.8
SalBow1G0188 Salvia bowleyana HOM05D001887 ORTHO05D006549 8.8e-124 449.1 270 81.9
TPR.G31432 Trifolium pratense HOM05D001887 ORTHO05D006549 4.4e-123 446.8 277 82.3
SEGI_02234 Sequoiadendron giganteum HOM05D001887 ORTHO05D006549 1.8e-113 414.8 364 61.3
Cfa026920 Carpinus fangiana HOM05D001887 ORTHO05D006549 5.3e-113 413.3 1023 30.4
ATR0107G001 Amborella trichopoda HOM05D001887 ORTHO05D006549 1.1e-110 405.6 355 61.7
Cpa.g.sc98.72 Carica papaya HOM05D001887 ORTHO05D006549 2.3e-108 397.9 288 70.8
Cre06.g311400 Chlamydomonas reinhardtii HOM05D001887 ORTHO05D006549 1.2e-101 375.6 1311 28.2
PRCOL_00000830 Prasinoderma coloniale HOM05D001887 ORTHO05D006549 4.4e-99 367.1 946 30.8
HPP92_013056 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.0e-84 319.3 291 59.1
CBR_g69645 Chara braunii HOM05D001887 ORTHO05D006549 4.0e-84 317.4 841 31.3
Atru.chr9.1200 Acer truncatum HOM05D001887 ORTHO05D006549 1.6e-80 305.4 168 88.1
HPP92_028226 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.6e-75 288.1 256 62.5
HPP92_027917 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.3e-74 285.8 198 72.7
Psat5g140400 Pisum sativum HOM05D001887 ORTHO05D006549 2.2e-74 285.0 223 67.7
GSVIVG01002647001 Vitis vinifera HOM05D001887 ORTHO05D006549 8.3e-66 256.5 145 88.3
HPP92_000026 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.6e-59 235.0 199 64.8
Atru.chr9.1201 Acer truncatum HOM05D001887 ORTHO05D006549 3.4e-59 234.6 240 57.5
Atru.chr9.1202 Acer truncatum HOM05D001887 ORTHO05D006549 9.9e-59 233.0 150 79.3
HPP92_000025 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-56 225.7 144 75.7
Psat4g195160 Pisum sativum HOM05D000527 ORTHO05D000559 3.5e-56 224.6 182 64.8
HPP92_028027 Vanilla planifolia HOM05D001887 ORTHO05D006549 2.7e-48 198.4 129 73.6
Glyma.01G204533 Glycine max HOM05D001887 ORTHO05D006549 1.7e-47 195.7 105 92.4
HPP92_002782 Vanilla planifolia HOM05D001887 ORTHO05D006549 5.6e-46 190.7 129 71.3
Sed0025805 Sechium edule HOM05D001887 ORTHO05D006549 2.8e-45 188.3 214 52.8
HPP92_028028 Vanilla planifolia HOM05D001887 ORTHO05D006549 6.2e-45 187.2 131 70.2
Psat5g084960 Pisum sativum HOM05D001887 ORTHO05D006549 5.8e-43 180.6 161 60.2
Atru.chr9.1203 Acer truncatum HOM05D001887 ORTHO05D006549 3.8e-42 177.9 98 87.8
MD04G1054800 Malus domestica HOM05D001887 ORTHO05D006549 5.1e-39 167.5 123 71.5
HPP92_028029 Vanilla planifolia HOM05D001887 ORTHO05D006549 1.6e-37 162.5 109 74.3
Psat7g123840 Pisum sativum HOM05D001887 ORTHO05D006549 3.7e-29 134.8 202 44.6
AagrBONN_evm.TU.Sc2ySwM_362.220 Anthoceros agrestis HOM05D001887 ORTHO05D006549 7.6e-27 127.1 85 69.4
Psat0s3354g0040 Pisum sativum HOM05D001887 ORTHO05D006549 5.5e-25 120.9 139 51.1
Psat3g155360 Pisum sativum HOM05D000527 ORTHO05D325619 7.1e-25 120.6 85 67.1
AagrBONN_evm.TU.Sc2ySwM_344.3537 Anthoceros agrestis HOM05D001887 ORTHO05D006549 1.1e-17 96.7 171 36.8
CDE11G1156 Ceratophyllum demersum HOM05D001409 ORTHO05D129850 3.9e-15 88.2 42 97.6
Glyma.01G204467 Glycine max HOM05D001887 ORTHO05D215531 2.7e-08 65.5 45 73.3
AagrBONN_evm.TU.Sc2ySwM_362.221 Anthoceros agrestis HOM05D001887 ORTHO05D070959 2.3e-07 62.4 59 50.8


User provided reference genes

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