Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G112800 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.1e-158 563.1 268 100.0
CiPaw.05G165700 Carya illinoinensis HOM05D004664 ORTHO05D005526 1.9e-150 535.8 268 94.4
QL05p066226 Quercus lobata HOM05D004664 ORTHO05D005526 1.0e-135 486.9 267 87.3
Haze_07058 Corylus avellana HOM05D004664 ORTHO05D005526 2.0e-131 472.6 269 84.4
Thecc.08G197000 Theobroma cacao HOM05D004664 ORTHO05D005526 1.1e-118 430.3 268 76.1
Duzib268G1219 Durio zibethinus HOM05D004664 ORTHO05D005526 3.3e-118 428.7 268 76.9
Atru.chr1.2210 Acer truncatum HOM05D004664 ORTHO05D005526 1.5e-115 419.9 268 73.5
COL.COLO4_20401 Corchorus olitorius HOM05D004664 ORTHO05D005526 1.5e-115 419.9 268 74.3
Eucgr.D00971 Eucalyptus grandis HOM05D004664 ORTHO05D005526 1.5e-115 419.9 268 72.8
Gohir.D05G311400 Gossypium hirsutum HOM05D004664 ORTHO05D005526 1.5e-115 419.9 268 72.8
Gorai.009G332500 Gossypium raimondii HOM05D004664 ORTHO05D005526 1.5e-115 419.9 268 72.8
Prupe.3G183500 Prunus persica HOM05D004664 ORTHO05D005526 2.9e-114 415.6 268 73.5
Nn1g08288 Nelumbo nucifera HOM05D004664 ORTHO05D005526 1.4e-113 413.3 268 72.4
Dinv11048 Davidia involucrata HOM05D004664 ORTHO05D005526 1.9e-113 412.9 266 74.1
TWI38G1364 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 1.9e-113 412.9 256 75.4
Gohir.A05G310600 Gossypium hirsutum HOM05D004664 ORTHO05D005526 2.4e-113 412.5 268 72.4
TWI63G0464 Tripterygium wilfordii HOM05D004664 ORTHO05D005526 7.0e-113 411.0 268 71.6
CANSAT64G2239 Cannabis sativa HOM05D004664 ORTHO05D005526 3.5e-112 408.7 268 70.9
TAR636G0408 Trochodendron aralioides HOM05D004664 ORTHO05D005526 6.0e-112 407.9 267 71.5
Manes.08G015000 Manihot esculenta HOM05D004664 ORTHO05D005526 7.8e-112 407.5 269 71.0
Sabra08G0019200 Salix brachista HOM05D004664 ORTHO05D005526 7.8e-112 407.5 268 70.9
GSVIVG01004332001 Vitis vinifera HOM05D004664 ORTHO05D005526 1.3e-111 406.8 243 77.4
Potri.015G143000 Populus trichocarpa HOM05D004664 ORTHO05D005526 2.3e-111 406.0 268 69.8
CSS0003336 Camellia sinensis var. sinensis HOM05D004664 ORTHO05D005526 3.9e-111 405.2 268 70.5
GSVIVG01002826001 Vitis vinifera HOM05D004664 ORTHO05D005526 3.9e-111 405.2 243 77.0
PGR004G1760 Punica granatum HOM05D004664 ORTHO05D005526 5.1e-111 404.8 268 69.8
Hma1.2p1_0277F.1_g111600 Hydrangea macrophylla HOM05D004664 ORTHO05D005526 6.6e-111 404.4 267 71.5
TAR633G0600 Trochodendron aralioides HOM05D004664 ORTHO05D005526 1.1e-110 403.7 268 70.5
Dinv01695 Davidia involucrata HOM05D004664 ORTHO05D005526 4.3e-110 401.7 264 71.6
RcHm_v2.0_Chr2g0153021 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-109 399.8 267 69.3
Aqoxy1G03457 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.8e-109 399.1 269 69.5
PSO541G3178 Papaver somniferum HOM05D004664 ORTHO05D005526 2.8e-109 399.1 268 68.3
MD17G1131000 Malus domestica HOM05D004664 ORTHO05D005526 6.2e-109 397.9 268 70.5
FvH4_6g39210 Fragaria vesca HOM05D004664 ORTHO05D005526 8.1e-109 397.5 267 68.2
FAN14G0080 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.1e-109 397.5 267 68.2
TPR.G5994 Trifolium pratense HOM05D004664 ORTHO05D005526 8.1e-109 397.5 268 70.1
FAN02G1202 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.1e-108 397.1 267 67.8
FAN05G0490 Fragaria x ananassa HOM05D004664 ORTHO05D005526 1.1e-108 397.1 267 67.8
PSO675G1009 Papaver somniferum HOM05D004664 ORTHO05D005526 1.4e-108 396.7 268 68.3
MELO3C021804.2 Cucumis melo HOM05D004664 ORTHO05D005526 1.8e-108 396.4 271 70.1
CsaV3_1G046480 Cucumis sativus L. HOM05D004664 ORTHO05D005526 1.8e-108 396.4 271 69.7
Glyma.07G270100 Glycine max HOM05D004664 ORTHO05D005526 1.8e-108 396.4 268 70.5
Sed0026896 Sechium edule HOM05D004664 ORTHO05D005526 4.0e-108 395.2 267 70.8
Cpa.g.sc27.187 Carica papaya HOM05D004664 ORTHO05D005526 5.2e-108 394.8 258 70.5
ClCG01G009110 Citrullus lanatus HOM05D004664 ORTHO05D005526 8.9e-108 394.0 271 70.1
MELO3C017782.2 Cucumis melo HOM05D004664 ORTHO05D005526 5.8e-107 391.3 271 69.7
Ciclev10015263m.g Citrus clementina HOM05D004664 ORTHO05D005526 1.4e-105 386.7 254 74.0
Lj4g0012990 Lotus japonicus HOM05D004664 ORTHO05D005526 2.1e-104 382.9 268 66.0
Psat0s2550g0080 Pisum sativum HOM05D004664 ORTHO05D005526 1.0e-103 380.6 268 67.9
Oeu016938.2 Olea europaea HOM05D004664 ORTHO05D005526 1.5e-102 376.7 257 69.3
Phvul.003G154500 Phaseolus vulgaris HOM05D004664 ORTHO05D005526 1.5e-102 376.7 268 67.2
Lj6g0004292 Lotus japonicus HOM05D004664 ORTHO05D005526 1.9e-102 376.3 268 65.3
VMungo1215G0123 Vigna mungo HOM05D004664 ORTHO05D005526 1.9e-102 376.3 269 67.7
Cc07_g14650 Coffea canephora HOM05D004664 ORTHO05D005526 2.5e-102 375.9 270 65.9
vmacro21384 Vaccinium macrocarpon HOM05D004664 ORTHO05D005526 2.5e-102 375.9 270 67.0
Sopen10g004780 Solanum pennellii HOM05D004664 ORTHO05D005526 3.3e-102 375.6 268 63.8
CAN.G413.16 Capsicum annuum HOM05D004664 ORTHO05D005526 4.3e-102 375.2 268 63.8
Migut.H01639 Erythranthe guttata HOM05D004664 ORTHO05D005526 4.3e-102 375.2 266 63.9
arahy.Tifrunner.gnm1.ann1.6YF458 Arachis hypogaea HOM05D004664 ORTHO05D005526 5.6e-102 374.8 268 64.9
arahy.Tifrunner.gnm1.ann1.U25ASJ Arachis hypogaea HOM05D004664 ORTHO05D005526 5.6e-102 374.8 268 64.6
Rhsim06G0067400 Rhododendron simsii HOM05D004664 ORTHO05D005526 5.6e-102 374.8 270 67.8
PGSC0003DMG400022830 Solanum tuberosum HOM05D004664 ORTHO05D005526 7.3e-102 374.4 266 63.9
SGA_v2.0_scaffold239G43984 Striga asiatica HOM05D004664 ORTHO05D005526 1.6e-101 373.2 269 65.8
RcHm_v2.0_Chr7g0230211 Rosa chinensis HOM05D004664 ORTHO05D005526 8.1e-101 370.9 272 66.5
Lalb_Chr04g0264741 Lupinus albus HOM05D004664 ORTHO05D005526 1.1e-100 370.5 266 66.2
MBI15_g26850_MAGBIO Magnolia biondii HOM05D004664 ORTHO05D005526 1.4e-100 370.2 263 67.3
CAN.G567.108 Capsicum annuum HOM05D004664 ORTHO05D005526 8.9e-100 367.5 264 63.3
Sc25g0005660 Simmondsia chinensis HOM05D004664 ORTHO05D005526 4.4e-99 365.2 264 62.1
Medtr4g134340 Medicago truncatula HOM05D004664 ORTHO05D005526 7.6e-99 364.4 275 65.8
Medtr1g043000 Medicago truncatula HOM05D004664 ORTHO05D005526 9.9e-99 364.0 276 66.3
Peaxi162Scf00530g00824 Petunia axillaris HOM05D004664 ORTHO05D005526 1.3e-98 363.6 246 67.9
Lj6A128T19 Lonicera japonica HOM05D004664 ORTHO05D005526 2.2e-98 362.8 260 67.7
FAN18G2840 Fragaria x ananassa HOM05D004664 ORTHO05D005526 8.4e-98 360.9 272 65.1
ECA238G0224 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.2e-96 357.1 270 63.0
unitig_22.g5707 Utricularia gibba HOM05D004664 ORTHO05D005526 3.5e-96 355.5 275 60.7
Nitab4.5_0003942g0040 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.0e-96 354.8 247 64.8
ATR0751G240 Amborella trichopoda HOM05D004664 ORTHO05D005526 7.8e-96 354.4 263 62.7
Hund19039 Selenicereus undatus HOM05D004664 ORTHO05D005526 7.8e-96 354.4 267 62.2
Medtr8g042940 Medicago truncatula HOM05D004664 ORTHO05D005526 2.3e-95 352.8 268 63.8
HanXRQChr15g0489541 Helianthus annuus HOM05D004664 ORTHO05D005526 5.1e-95 351.7 270 60.4
CDE04G0808 Ceratophyllum demersum HOM05D004664 ORTHO05D005526 8.1e-93 344.4 269 60.2
Solyc10g009000.4 Solanum lycopersicum HOM05D004664 ORTHO05D005526 2.4e-92 342.8 268 60.8
AL1G42190 Arabidopsis lyrata HOM05D004664 ORTHO05D005526 5.3e-92 341.7 269 62.8
Thhalv10008005m.g Eutrema salsugineum HOM05D004664 ORTHO05D005526 6.9e-92 341.3 244 66.4
Lsat_1_v5_gn_4_109780 Lactuca sativa HOM05D004664 ORTHO05D005526 1.5e-91 340.1 274 59.5
AT1G28560 Arabidopsis thaliana HOM05D004664 ORTHO05D005526 1.3e-90 337.0 269 62.1
BcaC01g00070 Brassica carinata HOM05D004664 ORTHO05D005526 4.9e-90 335.1 268 60.4
C03p75380 Brassica napus HOM05D004664 ORTHO05D005526 1.1e-89 334.0 244 64.3
Carub.0004s0328 Capsella rubella HOM05D004664 ORTHO05D005526 1.1e-89 334.0 269 61.3
A08p25430 Brassica napus HOM05D004664 ORTHO05D005526 1.4e-89 333.6 256 62.5
BcaB03g12095 Brassica carinata HOM05D004664 ORTHO05D005526 1.9e-89 333.2 268 60.1
BraA08t34494Z Brassica rapa HOM05D004664 ORTHO05D005526 1.9e-89 333.2 256 62.1
BolC3t19796H Brassica oleracea HOM05D004664 ORTHO05D005526 3.2e-89 332.4 244 63.9
SEGI_33972 Sequoiadendron giganteum HOM05D004664 ORTHO05D005526 7.1e-89 331.3 269 57.2
Carub.0001s2702 Capsella rubella HOM05D004664 ORTHO05D005526 9.3e-89 330.9 269 61.3
THA.LOC104803679 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 1.2e-88 330.5 275 60.0
THA.LOC104809221 Tarenaya hassleriana HOM05D004664 ORTHO05D005526 3.5e-88 328.9 265 61.9
Os01g0912600 Oryza sativa ssp. japonica HOM05D004664 ORTHO05D005526 1.7e-87 326.6 267 58.4
Aa31LG6G11170 Aethionema arabicum HOM05D004664 ORTHO05D005526 5.6e-86 321.6 251 62.5
AUR62028851 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.3e-85 320.5 267 57.3
AUR62005705 Chenopodium quinoa HOM05D004664 ORTHO05D005526 1.5e-83 313.5 230 64.3
Ah.04g149850 Amaranthus hybridus HOM05D000997 ORTHO05D000828 2.4e-81 306.2 229 62.4
Nitab4.5_0009068g0020 Nicotiana tabacum HOM05D004664 ORTHO05D005526 6.0e-80 301.6 248 58.1
Sabra15G0152800 Salix brachista HOM05D007457 ORTHO05D006729 6.0e-80 301.6 202 69.8
Cc09_g09390 Coffea canephora HOM05D004664 ORTHO05D005526 9.6e-78 294.3 200 69.0
EL10Ac3g07399 Beta vulgaris HOM05D004664 ORTHO05D005526 4.8e-77 292.0 267 53.9
Actinidia04550 Actinidia chinensis HOM05D004664 ORTHO05D005526 6.2e-77 291.6 185 74.1
Lj1A1166T78 Lonicera japonica HOM05D004664 ORTHO05D005526 3.1e-76 289.3 255 57.3
CARHR028060 Cardamine hirsuta HOM05D004664 ORTHO05D005526 6.9e-76 288.1 216 64.4
Actinidia19274 Actinidia chinensis HOM05D004664 ORTHO05D005526 9.3e-73 277.7 240 56.7
ECA238G4413 Erigeron canadensis HOM05D004664 ORTHO05D005526 3.5e-72 275.8 270 52.2
DCAR_024762 Daucus carota HOM05D004664 ORTHO05D005526 4.6e-72 275.4 267 53.6
Sp5g19680 Schrenkiella parvula HOM05D004664 ORTHO05D005526 6.0e-72 275.0 256 54.3
DCAR_031515 Daucus carota HOM05D004664 ORTHO05D005526 1.6e-69 266.9 266 52.6
AagrBONN_evm.TU.Sc2ySwM_117.2257 Anthoceros agrestis HOM05D004664 ORTHO05D005526 1.3e-66 257.3 242 51.7
Pp3c2_3010 Physcomitrium patens HOM05D004664 ORTHO05D005526 3.8e-66 255.8 243 50.2
Mapoly0028s0050 Marchantia polymorpha HOM05D004664 ORTHO05D005526 1.6e-64 250.4 270 45.6
Sp1g24810 Schrenkiella parvula HOM05D004664 ORTHO05D005526 1.6e-64 250.4 184 63.6
ECA247G2196 Erigeron canadensis HOM05D004664 ORTHO05D005526 4.6e-64 248.8 195 62.1
Ca_04223_v3 Cicer arietinum L. HOM05D004664 ORTHO05D005526 2.0e-59 233.4 173 65.9
Actinidia28954 Actinidia chinensis HOM05D004664 ORTHO05D005526 1.7e-58 230.3 162 68.5
arahy.Tifrunner.gnm1.ann1.3Z2F0I Arachis hypogaea HOM05D004664 ORTHO05D005526 1.8e-55 220.3 268 45.5
Zm00001eb365000 Zea mays HOM05D006840 ORTHO05D008588 3.9e-55 219.2 222 50.0
Aqoxy5G01821 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 2.0e-54 216.9 161 66.5
Medtr4g064230 Medicago truncatula HOM05D004664 ORTHO05D005526 2.2e-53 213.4 173 63.6
ECA238G2574 Erigeron canadensis HOM05D004664 ORTHO05D005526 1.1e-49 201.1 220 50.0
Aqoxy1G03234 Aquilegia oxysepala HOM05D004664 ORTHO05D005526 5.5e-49 198.7 133 68.4
SMO358G0740 Selaginella moellendorffii HOM05D004664 ORTHO05D005526 1.4e-36 157.5 184 41.8
DCAR_028981 Daucus carota HOM05D004664 ORTHO05D005526 1.3e-34 151.0 121 62.0
Cfa002678 Carpinus fangiana HOM05D004664 ORTHO05D005526 4.2e-33 146.0 88 81.8
Lsat_1_v5_gn_5_12680 Lactuca sativa HOM05D004664 ORTHO05D005526 2.3e-31 140.2 130 51.5
Duzib251G0925 Durio zibethinus HOM05D004664 ORTHO05D005526 5.9e-27 125.6 80 72.5
ECA237G0002 Erigeron canadensis HOM05D004664 ORTHO05D005526 7.2e-25 118.6 159 42.1
Duzib251G0924 Durio zibethinus HOM05D004664 ORTHO05D005526 8.3e-21 105.1 74 62.2
RcHm_v2.0_Chr6g0271881 Rosa chinensis HOM05D004664 ORTHO05D005526 9.1e-20 101.7 74 64.9
RcHm_v2.0_Chr6g0271891 Rosa chinensis HOM05D004664 ORTHO05D005526 1.2e-16 91.3 67 55.2
RcHm_v2.0_Chr6g0271991 Rosa chinensis HOM05D004664 ORTHO05D005526 1.6e-16 90.9 64 57.8
MCO08G225 Micromonas commoda HOM05D004664 ORTHO05D005526 2.1e-16 90.5 109 40.4
HPP92_017531 Vanilla planifolia HOM05D004664 ORTHO05D005526 3.6e-16 89.7 212 31.6
Cre15.g636650 Chlamydomonas reinhardtii HOM05D004664 ORTHO05D005526 2.3e-07 60.5 106 33.0
BcaC02g09524 Brassica carinata HOM05D029228 ORTHO05D027443 9.8e-06 55.1 74 48.6


User provided reference genes

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