Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.09G091900 Carya illinoinensis HOM05D006172 ORTHO05D005515 0.0e+00 1349.7 782 100.0
QL05p073195 Quercus lobata HOM05D006172 ORTHO05D005515 2.4e-302 1042.0 773 81.8
Dinv13892 Davidia involucrata HOM05D006172 ORTHO05D005515 2.2e-279 965.7 779 76.3
Haze_06799 Corylus avellana HOM05D006172 ORTHO05D005515 3.2e-275 951.8 711 80.0
CSS0050420 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 1.4e-270 936.4 779 73.0
CSS0038964 Camellia sinensis var. sinensis HOM05D006172 ORTHO05D005515 3.1e-270 935.3 779 72.9
GSVIVG01012726001 Vitis vinifera HOM05D006172 ORTHO05D005515 3.8e-268 928.3 778 74.9
Atru.chr10.2219 Acer truncatum HOM05D006172 ORTHO05D005515 5.2e-265 917.9 784 71.0
MD10G1321300 Malus domestica HOM05D006172 ORTHO05D005515 6.3e-263 911.0 781 72.5
Thecc.06G220200 Theobroma cacao HOM05D006172 ORTHO05D005515 1.1e-262 910.2 781 73.4
Duzib192G0085 Durio zibethinus HOM05D006172 ORTHO05D005515 2.4e-262 909.1 778 72.9
Prupe.4G021000 Prunus persica HOM05D006172 ORTHO05D005515 3.5e-261 905.2 779 72.7
Manes.16G007200 Manihot esculenta HOM05D006172 ORTHO05D005515 3.3e-259 898.7 778 72.1
RcHm_v2.0_Chr5g0003171 Rosa chinensis HOM05D006172 ORTHO05D005515 5.5e-259 897.9 779 65.7
TAR626G1786 Trochodendron aralioides HOM05D006172 ORTHO05D005515 2.8e-258 895.6 779 68.3
COL.COLO4_31773 Corchorus olitorius HOM05D006172 ORTHO05D005515 4.7e-258 894.8 776 72.8
Lalb_Chr13g0304211 Lupinus albus HOM05D006172 ORTHO05D005515 1.0e-257 893.6 779 69.8
Gohir.D05G173300 Gossypium hirsutum HOM05D006172 ORTHO05D005515 1.8e-257 892.9 785 63.4
Gorai.009G178500 Gossypium raimondii HOM05D006172 ORTHO05D005515 4.0e-257 891.7 785 66.8
FvH4_3g02080 Fragaria vesca HOM05D006172 ORTHO05D005515 3.4e-256 888.6 778 64.9
Ca_21083_v3 Cicer arietinum L. HOM05D006172 ORTHO05D005515 1.4e-254 883.2 779 71.9
Rhsim13G0154200 Rhododendron simsii HOM05D006172 ORTHO05D005515 2.4e-254 882.5 823 66.5
Medtr4g132120 Medicago truncatula HOM05D006172 ORTHO05D005515 5.4e-254 881.3 779 69.8
Nn1g07129 Nelumbo nucifera HOM05D006172 ORTHO05D005515 7.0e-254 880.9 780 70.9
Potri.004G015200 Populus trichocarpa HOM05D006172 ORTHO05D005515 1.2e-253 880.2 777 64.6
FAN21G3941 Fragaria x ananassa HOM05D006172 ORTHO05D005515 1.6e-253 879.8 773 64.8
CANSAT56G2229 Cannabis sativa HOM05D006172 ORTHO05D005515 2.9e-252 875.5 783 69.0
Sabra04G0007400 Salix brachista HOM05D006172 ORTHO05D005515 5.0e-252 874.8 795 59.9
FAN25G0496 Fragaria x ananassa HOM05D006172 ORTHO05D005515 6.6e-252 874.4 772 65.2
Gohir.A05G170200 Gossypium hirsutum HOM05D006172 ORTHO05D005515 5.6e-251 871.3 800 64.8
arahy.Tifrunner.gnm1.ann1.GS5NL2 Arachis hypogaea HOM05D006172 ORTHO05D005515 2.8e-250 869.0 781 69.5
Glyma.07G260400 Glycine max HOM05D006172 ORTHO05D005515 8.0e-250 867.5 783 67.3
Lj1A1230T62 Lonicera japonica HOM05D006172 ORTHO05D005515 4.0e-249 865.1 795 70.2
Lj4g0023330 Lotus japonicus HOM05D006172 ORTHO05D005515 4.0e-249 865.1 780 69.2
arahy.Tifrunner.gnm1.ann1.3R4FRS Arachis hypogaea HOM05D006172 ORTHO05D005515 2.6e-248 862.4 782 71.5
Ciclev10018338m.g Citrus clementina HOM05D006172 ORTHO05D005515 9.2e-246 854.0 781 69.8
TWI38G1682 Tripterygium wilfordii HOM05D006172 ORTHO05D005515 6.0e-245 851.3 778 70.2
Aqoxy1G02151 Aquilegia oxysepala HOM05D006172 ORTHO05D005515 3.9e-244 848.6 779 64.3
PSO541G4594 Papaver somniferum HOM05D006172 ORTHO05D005515 1.9e-243 846.3 782 64.5
VMungo1215G3219 Vigna mungo HOM05D006172 ORTHO05D005515 5.2e-241 838.2 788 65.7
PSO675G8381 Papaver somniferum HOM05D006172 ORTHO05D005515 1.3e-239 833.6 782 63.9
Hund21409 Selenicereus undatus HOM05D006172 ORTHO05D005515 1.3e-239 833.6 776 63.5
Migut.M01317 Erythranthe guttata HOM05D006172 ORTHO05D005515 1.4e-238 830.1 777 60.0
Sopen05g034060 Solanum pennellii HOM05D006172 ORTHO05D005515 1.4e-238 830.1 779 66.0
ClCG01G022000 Citrullus lanatus HOM05D006172 ORTHO05D005515 3.2e-238 828.9 794 68.3
Eucgr.E04055 Eucalyptus grandis HOM05D006172 ORTHO05D005515 7.0e-238 827.8 782 69.2
DCAR_028182 Daucus carota HOM05D006172 ORTHO05D005515 4.6e-237 825.1 780 67.3
Aa31LG9G9740 Aethionema arabicum HOM05D006172 ORTHO05D005515 1.3e-236 823.5 775 65.3
Nitab4.5_0006322g0020 Nicotiana tabacum HOM05D006172 ORTHO05D005515 2.5e-235 819.3 779 59.2
THA.LOC104813121 Tarenaya hassleriana HOM05D006172 ORTHO05D005515 2.5e-235 819.3 775 68.0
vmacro03686 Vaccinium macrocarpon HOM05D006172 ORTHO05D005515 7.3e-235 817.8 778 68.4
PGR042G0524 Punica granatum HOM05D006172 ORTHO05D005515 2.1e-234 816.2 784 66.1
Sed0002789 Sechium edule HOM05D006172 ORTHO05D005515 3.6e-234 815.5 777 68.3
Thhalv10028391m.g Eutrema salsugineum HOM05D006172 ORTHO05D005515 1.1e-233 813.9 775 67.4
CARHR252870 Cardamine hirsuta HOM05D006172 ORTHO05D005515 1.4e-233 813.5 777 65.5
SGA_v2.0_scaffold4G01916 Striga asiatica HOM05D006172 ORTHO05D005515 1.4e-233 813.5 775 63.9
CAN.G694.35 Capsicum annuum HOM05D006172 ORTHO05D005515 2.3e-233 812.8 782 64.7
Cc09_g01690 Coffea canephora HOM05D006172 ORTHO05D005515 4.0e-233 812.0 784 67.3
AT4G04670 Arabidopsis thaliana HOM05D006172 ORTHO05D005515 2.6e-232 809.3 777 62.0
Cpa.g.sc152.15 Carica papaya HOM05D006172 ORTHO05D005515 2.6e-232 809.3 731 72.2
Sp6g04230 Schrenkiella parvula HOM05D006172 ORTHO05D005515 2.6e-232 809.3 777 66.8
Phvul.003G078700 Phaseolus vulgaris HOM05D006172 ORTHO05D005515 5.8e-232 808.1 744 66.8
PGSC0003DMG400023367 Solanum tuberosum HOM05D006172 ORTHO05D005515 4.9e-231 805.1 760 66.6
A03p30170 Brassica napus HOM05D006172 ORTHO05D005515 1.7e-228 796.6 776 66.4
BraA03t12201Z Brassica rapa HOM05D006172 ORTHO05D005515 1.7e-228 796.6 776 66.4
Carub.0006s3250 Capsella rubella HOM05D006172 ORTHO05D005515 5.1e-228 795.0 776 62.0
AL6G48130 Arabidopsis lyrata HOM05D006172 ORTHO05D005515 8.6e-228 794.3 777 61.5
Solyc05g055610.4 Solanum lycopersicum HOM05D006172 ORTHO05D005515 9.5e-227 790.8 777 64.1
CsaV3_6G049060 Cucumis sativus L. HOM05D006172 ORTHO05D005515 1.2e-226 790.4 743 68.4
Ah.09g234910 Amaranthus hybridus HOM05D006172 ORTHO05D005515 1.6e-226 790.0 781 66.1
Sc05g0009930 Simmondsia chinensis HOM05D006172 ORTHO05D005515 5.2e-225 785.0 747 68.3
MELO3C007389.2 Cucumis melo HOM05D006172 ORTHO05D005515 1.2e-224 783.9 747 66.5
Oeu013636.1 Olea europaea HOM05D006172 ORTHO05D005515 5.8e-224 781.6 766 65.7
Sc05g0009220 Simmondsia chinensis HOM05D006172 ORTHO05D005515 7.6e-224 781.2 747 67.9
BolC3t15953H Brassica oleracea HOM05D006172 ORTHO05D005515 2.1e-221 773.1 776 65.6
AUR62012709 Chenopodium quinoa HOM05D006172 ORTHO05D005515 6.6e-220 768.1 780 65.9
AUR62021945 Chenopodium quinoa HOM05D006172 ORTHO05D005515 2.5e-219 766.1 778 65.4
Lsat_1_v5_gn_7_15980 Lactuca sativa HOM05D006172 ORTHO05D005515 1.2e-218 763.8 782 64.8
HanXRQChr05g0129541 Helianthus annuus HOM05D006172 ORTHO05D005515 1.2e-216 757.3 782 61.9
HanXRQChr05g0129551 Helianthus annuus HOM05D006172 ORTHO05D005515 1.2e-216 757.3 782 61.9
EL10Ac8g20057 Beta vulgaris HOM05D006172 ORTHO05D005515 2.0e-216 756.5 780 63.5
BcaB01g02576 Brassica carinata HOM05D006172 ORTHO05D005515 5.4e-214 748.4 775 64.9
ATR0794G123 Amborella trichopoda HOM05D006172 ORTHO05D005515 2.1e-213 746.5 792 60.9
Psat4g006680 Pisum sativum HOM05D006172 ORTHO05D005515 1.3e-212 743.8 713 70.1
C03p36400 Brassica napus HOM05D006172 ORTHO05D005515 5.1e-212 741.9 776 64.2
Peaxi162Scf00627g00035 Petunia axillaris HOM05D006172 ORTHO05D005515 2.5e-211 739.6 777 59.5
ECA236G0092 Erigeron canadensis HOM05D006172 ORTHO05D005515 1.2e-205 720.7 762 63.4
MBI02_g46431_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 2.2e-191 673.3 714 61.6
Zm00001eb322630 Zea mays HOM05D006172 ORTHO05D005515 3.5e-189 666.0 779 56.0
SEGI_01208 Sequoiadendron giganteum HOM05D006172 ORTHO05D005515 1.1e-185 654.4 826 54.2
Nitab4.5_0000096g0040 Nicotiana tabacum HOM05D006172 ORTHO05D005515 2.4e-185 653.3 710 60.0
SHI02198 Sapria himalayana HOM05D006172 ORTHO05D005515 7.7e-184 648.3 984 45.2
HPP92_012401 Vanilla planifolia HOM05D006172 ORTHO05D005515 7.4e-179 631.7 781 53.9
unitig_37.g12153 Utricularia gibba HOM05D006172 ORTHO05D005515 6.5e-175 618.6 774 56.3
CDE11G0909 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 1.1e-166 591.3 523 58.9
Pp3c9_15020 Physcomitrium patens HOM05D006172 ORTHO05D005515 1.8e-145 520.8 780 49.1
Mapoly0137s0034 Marchantia polymorpha HOM05D006172 ORTHO05D005515 2.5e-134 483.8 798 50.1
AagrBONN_evm.TU.Sc2ySwM_362.1356 Anthoceros agrestis HOM05D006172 ORTHO05D005515 5.6e-126 456.1 735 48.8
MBI02_g21856_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 2.1e-85 321.2 455 58.0
SMO172G0113 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 5.8e-83 313.2 229 62.4
MBI02_g21855_MAGBIO Magnolia biondii HOM05D006172 ORTHO05D005515 1.7e-82 311.6 205 70.7
Oeu014516.1 Olea europaea HOM05D006172 ORTHO05D005515 2.9e-82 310.8 178 82.0
CBR_g48263 Chara braunii HOM05D006172 ORTHO05D005515 7.1e-81 306.2 249 61.4
MCO05G475 Micromonas commoda HOM05D006172 ORTHO05D005515 1.8e-79 301.6 417 41.7
PRCOL_00000475 Prasinoderma coloniale HOM05D006172 ORTHO05D005515 7.9e-64 249.6 531 33.9
Cre14.g626634 Chlamydomonas reinhardtii HOM05D006172 ORTHO05D005515 5.9e-59 233.4 353 39.7
Oeu013635.1 Olea europaea HOM05D006172 ORTHO05D005515 7.2e-49 199.9 139 63.3
TPR.G20315 Trifolium pratense HOM05D006172 ORTHO05D005515 7.0e-44 183.3 102 84.3
TPR.G37083 Trifolium pratense HOM05D006172 ORTHO05D005515 2.3e-39 168.3 94 83.0
SMO139G0125 Selaginella moellendorffii HOM05D006172 ORTHO05D005515 3.6e-24 117.9 139 41.7
CDE11G0148 Ceratophyllum demersum HOM05D006172 ORTHO05D005515 3.3e-17 94.7 67 65.7
CAN.G694.33 Capsicum annuum HOM05D006172 ORTHO05D005515 9.8e-14 83.2 68 58.8
Peaxi162Scf00627g00310 Petunia axillaris HOM05D006172 ORTHO05D005515 2.2e-13 82.0 54 68.5
CBR_g42082 Chara braunii HOM05D003320 ORTHO05D003941 1.5e-09 69.3 77 42.9
Os07g0515000 Oryza sativa ssp. japonica HOM05D006172 ORTHO05D005515 4.3e-09 67.8 41 68.3
Dinv30898 Davidia involucrata HOM05D006340 ORTHO05D007568 1.6e-08 65.9 137 34.3
QL02p099119 Quercus lobata HOM05D000013 ORTHO05D000011 1.6e-08 65.9 34 91.2
SGA_v2.0_scaffold71G23997 Striga asiatica HOM05D006700 ORTHO05D008196 1.6e-08 65.9 130 32.3
AagrBONN_evm.TU.Sc2ySwM_117.2646 Anthoceros agrestis HOM05D001137 ORTHO05D007568 2.1e-08 65.5 125 32.0
Cre03.g146447 Chlamydomonas reinhardtii HOM05D000956 ORTHO05D003111 2.8e-08 65.1 75 40.0
Rhsim08G0144000 Rhododendron simsii HOM05D003320 ORTHO05D003941 4.7e-08 64.3 141 29.1
Eucgr.J03167 Eucalyptus grandis HOM05D006700 ORTHO05D008196 6.2e-08 63.9 119 35.3
Dinv17433 Davidia involucrata HOM05D003320 ORTHO05D003941 4.0e-07 61.2 100 33.0
vmacro18750 Vaccinium macrocarpon HOM05D006700 ORTHO05D008196 5.2e-07 60.8 119 33.6
Aa31LG4G4440 Aethionema arabicum HOM05D003320 ORTHO05D003941 6.8e-07 60.5 132 31.1
Mapoly0095s0051 Marchantia polymorpha HOM05D004809 ORTHO05D023484 6.8e-07 60.5 131 32.1
Psat7g260560 Pisum sativum HOM05D006700 ORTHO05D008196 6.8e-07 60.5 117 32.5
Actinidia38801 Actinidia chinensis HOM05D006700 ORTHO05D008196 8.9e-07 60.1 124 29.8
AUR62001351 Chenopodium quinoa HOM05D006700 ORTHO05D008196 8.9e-07 60.1 129 31.8
ECA232G1645 Erigeron canadensis HOM05D006700 ORTHO05D008196 8.9e-07 60.1 144 29.9
AUR62025653 Chenopodium quinoa HOM05D006700 ORTHO05D008196 1.2e-06 59.7 129 31.8
Glyma.04G160700 Glycine max HOM05D003320 ORTHO05D003941 1.2e-06 59.7 97 32.0
Lj3g0014359 Lotus japonicus HOM05D006700 ORTHO05D008196 1.2e-06 59.7 117 33.3
SEGI_01727 Sequoiadendron giganteum HOM05D003320 ORTHO05D003941 1.2e-06 59.7 76 36.8
arahy.Tifrunner.gnm1.ann1.Q13VIF Arachis hypogaea HOM05D006700 ORTHO05D008196 1.5e-06 59.3 122 32.8
Ciclev10025550m.g Citrus clementina HOM05D006700 ORTHO05D008196 1.5e-06 59.3 123 34.1
Glyma.06G204800 Glycine max HOM05D003320 ORTHO05D003941 1.5e-06 59.3 97 32.0
Actinidia21877 Actinidia chinensis HOM05D006700 ORTHO05D008196 2.0e-06 58.9 124 29.8
Aa31LG10G3230 Aethionema arabicum HOM05D006700 ORTHO05D008196 2.0e-06 58.9 121 31.4
COL.COLO4_31179 Corchorus olitorius HOM05D006700 ORTHO05D008196 2.0e-06 58.9 88 35.2
Mapoly0031s0090 Marchantia polymorpha HOM05D003320 ORTHO05D003941 2.0e-06 58.9 77 35.1
PGR031G3684 Punica granatum HOM05D006700 ORTHO05D008196 2.0e-06 58.9 84 41.7
RcHm_v2.0_Chr2g0149671 Rosa chinensis HOM05D006700 ORTHO05D008196 2.0e-06 58.9 127 30.7
arahy.Tifrunner.gnm1.ann1.J9SV8Q Arachis hypogaea HOM05D006700 ORTHO05D008196 2.6e-06 58.5 122 32.0
Cre02.g074650 Chlamydomonas reinhardtii HOM05D001137 ORTHO05D001967 2.6e-06 58.5 102 34.3
Lalb_Chr04g0264621 Lupinus albus HOM05D006700 ORTHO05D008196 2.6e-06 58.5 123 34.1
Hund05679 Selenicereus undatus HOM05D006700 ORTHO05D008196 2.6e-06 58.5 131 32.1
VMungo0647G0463 Vigna mungo HOM05D006700 ORTHO05D008196 2.6e-06 58.5 119 31.9
Ca_20506_v3 Cicer arietinum L. HOM05D006700 ORTHO05D008196 3.4e-06 58.2 117 32.5
Phvul.008G254100 Phaseolus vulgaris HOM05D006700 ORTHO05D008196 3.4e-06 58.2 119 31.1
CANSAT11G2049 Cannabis sativa HOM05D000249 ORTHO05D000206 4.4e-06 57.8 99 28.3
Ca_21762_v3 Cicer arietinum L. HOM05D003320 ORTHO05D003941 4.4e-06 57.8 77 36.4
Migut.D01756 Erythranthe guttata HOM05D003320 ORTHO05D003941 4.4e-06 57.8 76 35.5
Migut.L00877 Erythranthe guttata HOM05D003320 ORTHO05D003941 4.4e-06 57.8 76 35.5
vmacro17621 Vaccinium macrocarpon HOM05D003320 ORTHO05D003941 4.4e-06 57.8 154 26.0
Os03g0835800 Oryza sativa ssp. japonica HOM05D004809 ORTHO05D006732 5.8e-06 57.4 104 31.7
SMO174G0255 Selaginella moellendorffii HOM05D004809 ORTHO05D006732 5.8e-06 57.4 124 32.3
TPR.G3330 Trifolium pratense HOM05D006700 ORTHO05D008196 5.8e-06 57.4 117 31.6
AagrBONN_evm.TU.Sc2ySwM_117.82 Anthoceros agrestis HOM05D006700 ORTHO05D008196 7.5e-06 57.0 124 33.1
Lalb_Chr25g0278701 Lupinus albus HOM05D006700 ORTHO05D008196 7.5e-06 57.0 122 32.0
Medtr4g007980 Medicago truncatula HOM05D006700 ORTHO05D008196 7.5e-06 57.0 117 31.6
MCO14G480 Micromonas commoda HOM05D005521 ORTHO05D008962 7.5e-06 57.0 89 36.0
PGSC0003DMG400026513 Solanum tuberosum HOM05D006700 ORTHO05D008196 7.5e-06 57.0 119 31.1
Thecc.03G104500 Theobroma cacao HOM05D003320 ORTHO05D003941 7.5e-06 57.0 75 34.7
Zm00001eb063700 Zea mays HOM05D004809 ORTHO05D006732 7.5e-06 57.0 104 31.7
Carub.0006s0336 Capsella rubella HOM05D001137 ORTHO05D001967 9.8e-06 56.6 129 30.2
Cpa.g.sc155.24 Carica papaya HOM05D006700 ORTHO05D008196 9.8e-06 56.6 83 32.5
Haze_02592 Corylus avellana HOM05D004809 ORTHO05D006732 9.8e-06 56.6 109 30.3


User provided reference genes

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