Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.08G017100 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 3694.0 1966 100.0
CiPaw.07G216200 Carya illinoinensis HOM05D002037 ORTHO05D005261 0.0e+00 3077.3 1968 84.5
Haze_21662 Corylus avellana HOM05D002037 ORTHO05D005261 0.0e+00 2937.9 1993 80.9
QL12p030895 Quercus lobata HOM05D002037 ORTHO05D005261 0.0e+00 2863.2 1941 80.8
Cfa013233 Carpinus fangiana HOM05D002037 ORTHO05D005261 0.0e+00 2823.5 1984 78.8
Thecc.09G001100 Theobroma cacao HOM05D002037 ORTHO05D005261 0.0e+00 2685.2 1936 75.0
Prupe.1G463700 Prunus persica HOM05D002037 ORTHO05D005261 0.0e+00 2678.7 1941 76.4
Ciclev10007230m.g Citrus clementina HOM05D002037 ORTHO05D005261 0.0e+00 2639.8 1926 76.5
RcHm_v2.0_Chr6g0312521 Rosa chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2606.2 1943 74.4
Gorai.004G293400 Gossypium raimondii HOM05D002037 ORTHO05D005261 0.0e+00 2598.2 1934 73.5
MD08G1132100 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2587.0 1935 73.9
TWI32G0793 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2586.6 1977 72.5
TWI63G1280 Tripterygium wilfordii HOM05D002037 ORTHO05D005261 0.0e+00 2586.2 1981 72.7
COL.COLO4_18641 Corchorus olitorius HOM05D002037 ORTHO05D005261 0.0e+00 2584.3 1794 76.0
Gohir.A08G253200 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2582.4 1934 73.2
MD15G1113300 Malus domestica HOM05D002037 ORTHO05D005261 0.0e+00 2565.8 1940 73.1
Gohir.D08G274900 Gossypium hirsutum HOM05D002037 ORTHO05D005261 0.0e+00 2561.6 1934 72.8
arahy.Tifrunner.gnm1.ann1.WQ4U6A Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2553.9 1937 73.2
arahy.Tifrunner.gnm1.ann1.8Q3S3N Arachis hypogaea HOM05D002037 ORTHO05D005261 0.0e+00 2551.9 1938 73.1
TAR628G0359 Trochodendron aralioides HOM05D002037 ORTHO05D005261 0.0e+00 2551.2 1968 72.1
Phvul.009G099700 Phaseolus vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2544.6 1936 73.3
Glyma.06G075000 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2534.2 1939 72.9
Glyma.04G073900 Glycine max HOM05D002037 ORTHO05D005261 0.0e+00 2524.6 1961 72.0
FAN27G2203 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2520.3 1940 72.2
CsaV3_3G046860 Cucumis sativus L. HOM05D002037 ORTHO05D005261 0.0e+00 2518.4 1938 72.1
FvH4_2g30560 Fragaria vesca HOM05D002037 ORTHO05D005261 0.0e+00 2518.0 1941 72.4
Potri.006G280200 Populus trichocarpa HOM05D002037 ORTHO05D005261 0.0e+00 2515.7 1948 72.7
FAN24G1054 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2511.9 1987 71.2
Duzib187G1591 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2509.2 1951 71.1
ClCG05G017350 Citrullus lanatus HOM05D002037 ORTHO05D005261 0.0e+00 2495.7 2039 69.5
VMungo1309G2917 Vigna mungo HOM05D002037 ORTHO05D005261 0.0e+00 2494.2 1822 73.5
CSS0033264 Camellia sinensis var. sinensis HOM05D002037 ORTHO05D005261 0.0e+00 2486.1 1840 72.2
Manes.16G138600 Manihot esculenta HOM05D002037 ORTHO05D005261 0.0e+00 2478.4 1985 71.0
MELO3C003650.2 Cucumis melo HOM05D002037 ORTHO05D005261 0.0e+00 2478.0 1971 70.8
Lj7A751T36 Lonicera japonica HOM05D002037 ORTHO05D005261 0.0e+00 2476.0 1959 71.6
CANSAT25G0165 Cannabis sativa HOM05D002037 ORTHO05D005261 0.0e+00 2470.7 1941 71.0
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 0.0e+00 2456.8 1894 72.3
Atru.chr7.2709 Acer truncatum HOM05D002037 ORTHO05D005261 0.0e+00 2449.5 1791 73.5
Sed0009824 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2443.3 1941 71.2
Cpa.g.sc148.12 Carica papaya HOM05D002037 ORTHO05D005261 0.0e+00 2428.3 1940 69.5
Lalb_Chr11g0064041 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2426.4 1967 69.9
Sed0015816 Sechium edule HOM05D002037 ORTHO05D005261 0.0e+00 2420.6 1971 69.7
Medtr3g108470 Medicago truncatula HOM05D002037 ORTHO05D005261 0.0e+00 2407.9 1969 69.7
Psat5g026040 Pisum sativum HOM05D002037 ORTHO05D005261 0.0e+00 2407.9 1889 70.4
Lalb_Chr08g0243691 Lupinus albus HOM05D002037 ORTHO05D005261 0.0e+00 2384.0 1980 68.4
TPR.G12447 Trifolium pratense HOM05D002037 ORTHO05D005261 0.0e+00 2377.8 1827 70.6
Lj5g0025434 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2369.7 1935 69.2
Duzib168G1462 Durio zibethinus HOM05D002037 ORTHO05D005261 0.0e+00 2363.2 1930 69.0
FAN20G1121 Fragaria x ananassa HOM05D002037 ORTHO05D005261 0.0e+00 2363.2 1981 68.1
Hund19377 Selenicereus undatus HOM05D002037 ORTHO05D005261 0.0e+00 2348.5 1943 67.2
Actinidia03327 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2339.3 1905 69.7
Eucgr.C03980 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 2333.9 1924 69.1
PGR044G2064 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2324.7 1971 67.4
CAN.G195.8 Capsicum annuum HOM05D002037 ORTHO05D005261 0.0e+00 2319.7 1944 67.1
Sopen08g023030 Solanum pennellii HOM05D002037 ORTHO05D005261 0.0e+00 2305.4 1934 67.2
Aqoxy6G00128 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 0.0e+00 2297.7 1988 67.0
Ca_15684_v3 Cicer arietinum L. HOM05D002037 ORTHO05D005261 0.0e+00 2295.8 1859 68.4
GSVIVG01035587001 Vitis vinifera HOM05D002037 ORTHO05D005261 0.0e+00 2295.4 1942 67.9
Lj1g0006019 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 2295.0 1939 67.1
Solyc08g074370.4 Solanum lycopersicum HOM05D002037 ORTHO05D005261 0.0e+00 2294.2 1922 67.2
PGR044G2421 Punica granatum HOM05D002037 ORTHO05D005261 0.0e+00 2291.2 1827 68.3
Sc09g0007440 Simmondsia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 2263.8 1937 65.8
AUR62028065 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2255.7 1934 66.2
MSTRG.25765 Avicennia marina HOM05D002037 ORTHO05D005261 0.0e+00 2250.7 1946 66.4
EL10Ac2g03672 Beta vulgaris HOM05D002037 ORTHO05D005261 0.0e+00 2246.1 1937 65.6
Cc00_g09840 Coffea canephora HOM05D002037 ORTHO05D005261 0.0e+00 2242.2 1967 65.1
vmacro05091 Vaccinium macrocarpon HOM05D002037 ORTHO05D005261 0.0e+00 2238.4 1910 67.5
AUR62020667 Chenopodium quinoa HOM05D002037 ORTHO05D005261 0.0e+00 2228.8 1936 65.9
DCAR_002179 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2224.9 1952 63.9
HanXRQChr03g0082961 Helianthus annuus HOM05D002037 ORTHO05D005261 0.0e+00 2222.6 1854 67.0
Peaxi162Scf00213g01313 Petunia axillaris HOM05D002037 ORTHO05D005261 0.0e+00 2216.4 1790 67.5
SalBow4G1905 Salvia bowleyana HOM05D002037 ORTHO05D005261 0.0e+00 2179.1 1820 65.9
Migut.A00462 Erythranthe guttata HOM05D002037 ORTHO05D005261 0.0e+00 2172.5 1834 64.9
MBI09_g40924_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 2154.4 1990 63.0
ECA240G1370 Erigeron canadensis HOM05D002037 ORTHO05D005261 0.0e+00 2152.5 1939 64.1
Nn1g08375 Nelumbo nucifera HOM05D002037 ORTHO05D005261 0.0e+00 2112.8 1694 68.5
SGA_v2.0_scaffold27G11691 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2105.1 1894 63.1
SGA_v2.0_scaffold193G40648 Striga asiatica HOM05D002037 ORTHO05D005261 0.0e+00 2104.3 1964 63.3
PSO063G0181 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2095.5 1966 61.9
THA.LOC104803889 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2091.2 1972 61.6
PSO017G1653 Papaver somniferum HOM05D002037 ORTHO05D005261 0.0e+00 2085.8 1853 62.1
THA.LOC104803581 Tarenaya hassleriana HOM05D002037 ORTHO05D005261 0.0e+00 2070.0 1924 61.1
Lsat_1_v5_gn_5_59360 Lactuca sativa HOM05D002037 ORTHO05D005261 0.0e+00 2055.4 1941 62.8
DCAR_030972 Daucus carota HOM05D002037 ORTHO05D005261 0.0e+00 2040.0 1866 62.0
ATR0584G173 Amborella trichopoda HOM05D002037 ORTHO05D005261 0.0e+00 1987.6 1957 59.2
Thhalv10024189m.g Eutrema salsugineum HOM05D002037 ORTHO05D005261 0.0e+00 1972.2 1908 58.4
CDE02G1944 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1969.1 1874 59.4
Rhsim07G0173400 Rhododendron simsii HOM05D002037 ORTHO05D005261 0.0e+00 1961.4 1729 63.7
AL7G20910 Arabidopsis lyrata HOM05D002037 ORTHO05D005261 0.0e+00 1959.5 1914 57.8
C07p58470 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1958.3 1882 58.9
BraA03t15097Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1950.3 1983 58.2
BolC7t46302H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1948.3 1914 58.4
CDE08G1677 Ceratophyllum demersum HOM05D002037 ORTHO05D005261 0.0e+00 1947.9 1958 57.9
A03p60560 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1944.9 2017 57.5
Carub.0007s0937 Capsella rubella HOM05D002037 ORTHO05D005261 0.0e+00 1941.4 1911 57.9
BcaB03g12684 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1940.2 1905 57.8
CARHR239070 Cardamine hirsuta HOM05D002037 ORTHO05D005261 0.0e+00 1919.1 1914 57.3
BcaC01g01107 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1917.9 1878 57.6
BolC3t21123H Brassica oleracea HOM05D002037 ORTHO05D005261 0.0e+00 1917.1 1892 57.6
Aa31LG2G19150 Aethionema arabicum HOM05D002037 ORTHO05D005261 0.0e+00 1916.7 1975 57.5
C03p88150 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1916.0 1890 57.4
A08p18770 Brassica napus HOM05D002037 ORTHO05D005261 0.0e+00 1911.7 1894 57.4
BraA08t33838Z Brassica rapa HOM05D002037 ORTHO05D005261 0.0e+00 1911.7 1894 57.4
AT4G31160 Arabidopsis thaliana HOM05D002037 ORTHO05D005261 0.0e+00 1897.5 1914 57.3
HPP92_025041 Vanilla planifolia HOM05D002037 ORTHO05D005261 0.0e+00 1787.3 1909 55.8
Zm00001eb434410 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1716.8 1974 53.1
Eucgr.C00279 Eucalyptus grandis HOM05D002037 ORTHO05D005261 0.0e+00 1677.5 1240 72.4
Zm00001eb076460 Zea mays HOM05D002037 ORTHO05D005261 0.0e+00 1658.7 1879 51.6
MBI09_g01931_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D005261 0.0e+00 1628.6 1505 62.7
Dinv37481 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1624.0 1232 72.5
Actinidia25728 Actinidia chinensis HOM05D002037 ORTHO05D005261 0.0e+00 1593.6 1949 52.2
Pp3c1_12700 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1532.7 1900 49.3
Pp3c1_12703 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1532.7 1900 49.3
Pp3c2_24840 Physcomitrium patens HOM05D002037 ORTHO05D005261 0.0e+00 1512.3 1877 49.7
BcaNung01540 Brassica carinata HOM05D002037 ORTHO05D005261 0.0e+00 1511.9 1487 59.7
Mapoly0062s0116 Marchantia polymorpha HOM05D002037 ORTHO05D005261 0.0e+00 1510.0 1946 48.5
Hma1.2p1_0214F.1_g090640 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1508.4 1235 68.3
unitig_26.g8827 Utricularia gibba HOM05D002037 ORTHO05D005261 0.0e+00 1456.4 1985 49.7
Sp7g29040 Schrenkiella parvula HOM05D002037 ORTHO05D005261 0.0e+00 1383.2 1547 54.1
Nitab4.5_0009273g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 0.0e+00 1308.9 1087 68.2
AagrBONN_evm.TU.Sc2ySwM_117.676 Anthoceros agrestis HOM05D002037 ORTHO05D005261 0.0e+00 1297.7 1784 46.1
Lj1g0010809 Lotus japonicus HOM05D002037 ORTHO05D005261 0.0e+00 1277.7 1333 58.5
Dinv09451 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1234.2 922 72.3
Hma1.2p1_0319F.1_g123860 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 0.0e+00 1183.3 1043 66.4
Dinv09452 Davidia involucrata HOM05D002037 ORTHO05D005261 0.0e+00 1099.3 866 68.8
Oeu057143.1 Olea europaea HOM05D002037 ORTHO05D005261 1.3e-296 1024.2 1498 47.5
Nitab4.5_0003528g0010 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.7e-294 1016.5 846 68.6
CBR_g37392 Chara braunii HOM05D002037 ORTHO05D000002 1.5e-281 974.2 1635 41.0
SEGI_24212 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.0e-273 947.2 813 64.9
Migut.E01409 Erythranthe guttata HOM05D002037 ORTHO05D005261 3.5e-262 909.8 1878 36.1
PSO170G5891 Papaver somniferum HOM05D002037 ORTHO05D005261 3.3e-252 876.7 889 56.7
Hma1.2p1_0214F.1_g090650 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 3.6e-214 750.4 619 69.3
Glyma.14G131100 Glycine max HOM05D002037 ORTHO05D005261 1.6e-206 724.9 722 56.1
SEGI_28363 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 2.4e-194 684.5 655 58.3
Dinv37482 Davidia involucrata HOM05D002037 ORTHO05D005261 1.6e-193 681.8 498 69.3
Os04g0691200 Oryza sativa ssp. japonica HOM05D002037 ORTHO05D005261 7.1e-186 656.4 653 54.1
Hma1.2p1_2010F.1_g311000 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.4e-173 614.8 446 74.2
SHI50541 Sapria himalayana HOM05D002037 ORTHO05D005261 3.1e-173 614.4 629 57.6
Hma1.2p1_1382F.1_g279390 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.2e-153 549.3 532 62.8
Hma1.2p1_2176F.1_g316130 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 1.5e-151 542.3 532 63.0
FAN20G0200 Fragaria x ananassa HOM05D002037 ORTHO05D005261 5.3e-133 480.7 501 56.5
SHI21131 Sapria himalayana HOM05D002037 ORTHO05D005261 3.9e-120 438.0 420 58.6
Aqoxy4G02471 Aquilegia oxysepala HOM05D002037 ORTHO05D005261 3.3e-119 434.9 1273 28.8
Hund03252 Selenicereus undatus HOM05D002037 ORTHO05D005261 6.6e-83 314.3 872 32.6
Cre17.g725450 Chlamydomonas reinhardtii HOM05D002037 ORTHO05D005261 1.9e-82 312.8 2078 23.2
BcaNung01541 Brassica carinata HOM05D002037 ORTHO05D005261 2.5e-82 312.4 512 43.0
Migut.E01404 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.6e-81 309.7 652 34.2
Migut.E01403 Erythranthe guttata HOM05D002037 ORTHO05D005261 1.3e-75 290.0 456 39.5
Hma1.2p1_1382F.1_g279380 Hydrangea macrophylla HOM05D002037 ORTHO05D005261 2.1e-73 282.7 226 69.5
SEGI_07751 Sequoiadendron giganteum HOM05D002037 ORTHO05D005261 8.1e-73 280.8 460 41.1
Lj1g0019909 Lotus japonicus HOM05D002037 ORTHO05D005261 1.8e-72 279.6 270 72.2
Hma1.2p1_2176F.1_g316120 Hydrangea macrophylla HOM05D002037 ORTHO05D005586 2.1e-65 256.1 199 69.8
TPR.G39361 Trifolium pratense HOM05D002037 ORTHO05D005261 5.1e-59 235.0 276 50.4
TPR.G7111 Trifolium pratense HOM05D002037 ORTHO05D005261 2.3e-51 209.5 234 59.0
Gohir.D08G274833 Gossypium hirsutum HOM05D002037 ORTHO05D005261 2.5e-42 179.5 187 71.1
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.7e-38 166.8 225 51.1
arahy.Tifrunner.gnm1.ann1.ME62WN Arachis hypogaea HOM05D002037 ORTHO05D005261 1.4e-19 104.0 94 59.6
Nitab4.5_0000919g0010 Nicotiana tabacum HOM05D002037 ORTHO05D021575 5.3e-16 92.0 75 64.0
Dinv03356 Davidia involucrata HOM05D002037 ORTHO05D005261 1.5e-15 90.5 165 39.4
MD08G1134600 Malus domestica HOM05D002037 ORTHO05D005261 2.0e-15 90.1 63 69.8
Hund03253 Selenicereus undatus HOM05D002037 ORTHO05D005261 3.4e-15 89.4 52 71.2
Atru.chr7.2708 Acer truncatum HOM05D002037 ORTHO05D005261 9.4e-13 81.3 133 72.9
Cfa014748 Carpinus fangiana HOM05D000549 ORTHO05D021575 3.0e-11 76.3 84 58.3
QL12p030705 Quercus lobata HOM05D007909 ORTHO05D021575 3.3e-10 72.8 44 84.1
TPR.G29968 Trifolium pratense HOM05D001758 ORTHO05D005969 3.7e-09 69.3 33 87.9
Dinv42062 Davidia involucrata HOM05D000142 ORTHO05D000124 8.2e-09 68.2 60 60.0
MBI08_g04317_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 1.0e-06 61.2 42 76.2
MBI05_g22526_MAGBIO Magnolia biondii HOM05D002037 ORTHO05D018021 2.2e-06 60.1 42 73.8
MBI05_g34595_MAGBIO Magnolia biondii HOM05D003023 ORTHO05D018021 2.2e-06 60.1 42 73.8
Nitab4.5_0026868g0020 Nicotiana tabacum HOM05D002037 ORTHO05D005261 2.9e-06 59.7 52 53.8
MBI17_g23594_MAGBIO Magnolia biondii HOM05D000887 ORTHO05D018021 5.0e-06 58.9 42 73.8
EL10Ac7g17257 Beta vulgaris HOM05D002037 ORTHO05D021575 8.5e-06 58.2 43 67.4
MBI14_g11886_MAGBIO Magnolia biondii HOM05D056533 ORTHO05D018021 8.5e-06 58.2 42 71.4


User provided reference genes

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