Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G159800 Carya illinoinensis HOM05D005396 ORTHO05D006400 1.1e-125 453.4 230 100.0
Cfa013848 Carpinus fangiana HOM05D005396 ORTHO05D006400 4.5e-92 341.7 228 77.2
QL93p0267_0015 Quercus lobata HOM05D005396 ORTHO05D006400 6.7e-88 327.8 221 74.2
Prupe.6G153500 Prunus persica HOM05D005396 ORTHO05D006400 9.4e-74 280.8 219 65.8
MD11G1180700 Malus domestica HOM05D005396 ORTHO05D006400 8.0e-73 277.7 219 63.0
Haze_22522 Corylus avellana HOM05D005396 ORTHO05D006400 1.0e-72 277.3 228 67.1
RcHm_v2.0_Chr5g0056531 Rosa chinensis HOM05D005396 ORTHO05D006400 6.8e-72 274.6 216 62.5
TAR623G1186 Trochodendron aralioides HOM05D005396 ORTHO05D006400 1.5e-71 273.5 221 63.8
Actinidia06861 Actinidia chinensis HOM05D005396 ORTHO05D006400 8.3e-70 267.7 217 63.1
Aqoxy5G02307 Aquilegia oxysepala HOM05D005396 ORTHO05D006400 5.9e-68 261.5 229 60.7
FvH4_3g30540 Fragaria vesca HOM05D005396 ORTHO05D006400 2.5e-66 256.1 215 60.0
FAN11G0079 Fragaria x ananassa HOM05D005396 ORTHO05D006400 5.5e-66 255.0 215 60.0
FAN16G3367 Fragaria x ananassa HOM05D005396 ORTHO05D006400 3.6e-65 252.3 213 60.1
Rhsim13G0228100 Rhododendron simsii HOM05D005396 ORTHO05D006400 8.0e-65 251.1 218 61.5
RhsimUnG0154800 Rhododendron simsii HOM05D005396 ORTHO05D006400 1.0e-64 250.8 218 61.5
FAN25G1745 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.4e-64 250.4 207 60.9
Eucgr.J00626 Eucalyptus grandis HOM05D005396 ORTHO05D006400 3.0e-64 249.2 225 56.9
PGR119G0906 Punica granatum HOM05D005396 ORTHO05D006400 8.9e-64 247.7 226 56.6
Sabra04G0132800 Salix brachista HOM05D005396 ORTHO05D006400 2.0e-63 246.5 215 57.7
Nn4g25074 Nelumbo nucifera HOM05D005396 ORTHO05D006400 3.4e-63 245.7 225 55.6
Manes.04G053800 Manihot esculenta HOM05D005396 ORTHO05D006400 5.7e-63 245.0 218 56.0
Thecc.09G337500 Theobroma cacao HOM05D005396 ORTHO05D006400 7.5e-63 244.6 235 55.7
Hma1.2p1_0143F.1_g064480 Hydrangea macrophylla HOM05D005396 ORTHO05D006400 9.8e-63 244.2 226 58.4
vmacro04253 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.7e-62 243.4 231 55.8
Nitab4.5_0005132g0020 Nicotiana tabacum HOM05D005396 ORTHO05D006400 4.1e-61 238.8 199 61.3
GSVIVG01037451001 Vitis vinifera HOM05D005396 ORTHO05D006400 4.1e-61 238.8 225 60.9
Nitab4.5_0001568g0090 Nicotiana tabacum HOM05D005396 ORTHO05D006400 9.2e-61 237.7 199 60.3
Potri.004G195600 Populus trichocarpa HOM05D005396 ORTHO05D006400 9.2e-61 237.7 220 55.9
TWI31G0083 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 2.0e-60 236.5 222 56.3
Lj6g0008952 Lotus japonicus HOM05D005396 ORTHO05D006400 5.9e-60 235.0 165 69.1
CANSAT54G2052 Cannabis sativa HOM05D005396 ORTHO05D006400 1.3e-59 233.8 179 63.1
PGSC0003DMG400032195 Solanum tuberosum HOM05D005396 ORTHO05D006400 1.7e-59 233.4 220 55.5
Peaxi162Scf00441g00618 Petunia axillaris HOM05D005396 ORTHO05D006400 2.3e-59 233.0 221 56.1
Ciclev10017900m.g Citrus clementina HOM05D005396 ORTHO05D006400 1.1e-58 230.7 212 56.6
Sc12g0000550 Simmondsia chinensis HOM05D005396 ORTHO05D006400 1.1e-58 230.7 225 55.1
MSTRG.17554 Avicennia marina HOM05D005396 ORTHO05D006400 1.5e-58 230.3 214 54.2
Cc01_g01860 Coffea canephora HOM05D005396 ORTHO05D006400 1.9e-58 229.9 220 56.4
Sopen01g002210 Solanum pennellii HOM05D005396 ORTHO05D006400 4.3e-58 228.8 220 55.9
TWI79G1618 Tripterygium wilfordii HOM05D005396 ORTHO05D006400 4.3e-58 228.8 231 54.1
CAN.G140.42 Capsicum annuum HOM05D005396 ORTHO05D006400 5.6e-58 228.4 220 55.5
COL.COLO4_18366 Corchorus olitorius HOM05D005396 ORTHO05D006338 9.5e-58 227.6 229 56.3
Ca_16226_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 6.1e-57 224.9 253 49.0
Ca_30133_v3 Cicer arietinum L. HOM05D005396 ORTHO05D006400 6.1e-57 224.9 253 49.0
Hund20984 Selenicereus undatus HOM05D005396 ORTHO05D006400 1.8e-56 223.4 226 55.8
ECA248G0004 Erigeron canadensis HOM05D005396 ORTHO05D006400 2.3e-56 223.0 221 54.8
Cpa.g.sc103.64 Carica papaya HOM05D005396 ORTHO05D006400 3.1e-56 222.6 237 50.6
VMungo0540G2152 Vigna mungo HOM05D005396 ORTHO05D006400 4.0e-56 222.2 260 48.1
DCAR_024368 Daucus carota HOM05D005396 ORTHO05D006400 8.9e-56 221.1 211 53.6
Medtr3g078850 Medicago truncatula HOM05D005396 ORTHO05D006400 8.9e-56 221.1 180 59.4
Phvul.L001837 Phaseolus vulgaris HOM05D005396 ORTHO05D006400 8.9e-56 221.1 193 58.5
Atru.chr3.1131 Acer truncatum HOM05D005396 ORTHO05D006400 1.2e-55 220.7 232 51.7
Solyc01g006210.4 Solanum lycopersicum HOM05D005396 ORTHO05D006400 1.2e-55 220.7 220 55.0
Glyma.20G050900 Glycine max HOM05D005396 ORTHO05D006400 1.5e-55 220.3 252 50.4
HanXRQChr01g0021191 Helianthus annuus HOM05D005396 ORTHO05D006400 1.5e-55 220.3 193 57.0
SGA_v2.0_scaffold3G01566 Striga asiatica HOM05D005396 ORTHO05D006400 1.5e-55 220.3 214 51.4
arahy.Tifrunner.gnm1.ann1.MJD0TM Arachis hypogaea HOM05D005396 ORTHO05D006400 2.0e-55 219.9 267 48.3
Atru.chr3.1122 Acer truncatum HOM05D005396 ORTHO05D006400 2.6e-55 219.5 232 51.3
SalBow2G1218 Salvia bowleyana HOM05D005396 ORTHO05D006400 2.6e-55 219.5 213 51.2
Migut.N02270 Erythranthe guttata HOM05D005396 ORTHO05D006400 9.8e-55 217.6 212 55.2
ClCG02G024200 Citrullus lanatus HOM05D005396 ORTHO05D006400 1.7e-54 216.9 223 52.5
Oeu058539.1 Olea europaea HOM05D005396 ORTHO05D006400 1.7e-54 216.9 215 51.6
PSO384G1109 Papaver somniferum HOM05D005396 ORTHO05D006400 3.7e-54 215.7 214 53.3
AUR62001615 Chenopodium quinoa HOM05D005396 ORTHO05D006400 4.9e-54 215.3 222 52.3
Carub.0006s1945 Capsella rubella HOM05D005396 ORTHO05D006400 6.4e-54 214.9 229 54.6
Lalb_Chr19g0127081 Lupinus albus HOM05D005396 ORTHO05D006400 6.4e-54 214.9 185 56.8
TPR.G28402 Trifolium pratense HOM05D005396 ORTHO05D006400 1.6e-52 210.3 259 46.3
MELO3C014703.2 Cucumis melo HOM05D005396 ORTHO05D006400 2.0e-52 209.9 223 51.1
Gohir.A03G035066 Gossypium hirsutum HOM05D005396 ORTHO05D006400 2.0e-52 209.9 232 50.9
MBI13_g02393_MAGBIO Magnolia biondii HOM05D005396 ORTHO05D006400 2.0e-52 209.9 244 49.6
Gohir.D03G133200 Gossypium hirsutum HOM05D005396 ORTHO05D006400 1.0e-51 207.6 232 50.0
Gorai.003G140300 Gossypium raimondii HOM05D005396 ORTHO05D006400 1.7e-51 206.8 232 50.0
Duzib170G1145 Durio zibethinus HOM05D005396 ORTHO05D006400 3.0e-51 206.1 196 54.6
Ah.15g099430 Amaranthus hybridus HOM05D005396 ORTHO05D006400 8.6e-51 204.5 219 51.6
Aa31LG1G13640 Aethionema arabicum HOM05D005396 ORTHO05D006400 1.1e-50 204.1 230 52.6
ATR0307G059 Amborella trichopoda HOM05D005396 ORTHO05D006400 1.1e-50 204.1 219 51.6
EL10Ac1g01677 Beta vulgaris HOM05D005396 ORTHO05D006400 3.3e-50 202.6 218 51.8
AL6G32750 Arabidopsis lyrata HOM05D005396 ORTHO05D006400 4.3e-50 202.2 222 53.6
CSS0010626 Camellia sinensis var. sinensis HOM05D005396 ORTHO05D006400 5.6e-50 201.8 195 55.9
Lsat_1_v5_gn_1_68341 Lactuca sativa HOM05D005396 ORTHO05D006400 9.5e-50 201.1 186 55.9
Dinv09746 Davidia involucrata HOM05D005396 ORTHO05D006400 2.8e-49 199.5 136 69.9
A10p18950 Brassica napus HOM05D005396 ORTHO05D006400 3.6e-49 199.1 229 52.0
BraA10t43972Z Brassica rapa HOM05D005396 ORTHO05D006400 3.6e-49 199.1 229 52.0
Sp6g23380 Schrenkiella parvula HOM05D005396 ORTHO05D006400 3.6e-49 199.1 180 60.0
Thhalv10013965m.g Eutrema salsugineum HOM05D005396 ORTHO05D006400 1.1e-48 197.6 156 63.5
BcaB08g36475 Brassica carinata HOM05D005396 ORTHO05D006400 1.4e-48 197.2 156 64.1
THA.LOC104799054 Tarenaya hassleriana HOM05D005396 ORTHO05D006400 5.2e-48 195.3 227 49.3
BNapus_Darmor_BZH_scaffold_38p01120 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-47 194.1 230 52.2
C09p54930 Brassica napus HOM05D005396 ORTHO05D006400 1.2e-47 194.1 156 62.8
BraA02t05619Z Brassica rapa HOM05D005396 ORTHO05D006400 1.2e-47 194.1 230 52.2
CARHR191730 Cardamine hirsuta HOM05D005396 ORTHO05D006400 1.5e-47 193.7 174 58.6
BolC9t58356H Brassica oleracea HOM05D005396 ORTHO05D006400 3.4e-47 192.6 228 50.4
BcaC03g13834 Brassica carinata HOM05D005396 ORTHO05D006400 4.4e-47 192.2 231 51.9
BolC2t07100H Brassica oleracea HOM05D005396 ORTHO05D006400 4.4e-47 192.2 231 51.9
Sed0007754 Sechium edule HOM05D005396 ORTHO05D006400 4.4e-47 192.2 222 48.2
BcaC04g19522 Brassica carinata HOM05D005396 ORTHO05D006400 7.5e-47 191.4 233 50.2
Zm00001eb405340 Zea mays HOM05D005396 ORTHO05D006400 7.5e-47 191.4 222 49.1
BcaB05g22770 Brassica carinata HOM05D005396 ORTHO05D006400 1.3e-46 190.7 228 50.4
EL10Ac7g16216 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-46 189.5 268 44.8
RcHm_v2.0_Chr5g0056151 Rosa chinensis HOM05D005396 ORTHO05D006400 8.3e-46 188.0 162 56.2
EL10Ac7g16212 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-45 186.8 232 47.8
vmacro22428 Vaccinium macrocarpon HOM05D005396 ORTHO05D006400 1.9e-45 186.8 217 50.2
AT5G21140 Arabidopsis thaliana HOM05D005396 ORTHO05D006400 2.4e-45 186.4 223 48.4
Psat0s646g0040 Pisum sativum HOM05D005396 ORTHO05D006400 4.1e-45 185.7 222 47.3
arahy.Tifrunner.gnm1.ann1.MU94NL Arachis hypogaea HOM05D005396 ORTHO05D006400 1.2e-44 184.1 260 45.0
CDE02G2011 Ceratophyllum demersum HOM05D005396 ORTHO05D006400 3.0e-43 179.5 235 44.3
Os12g0127100 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 3.9e-43 179.1 226 47.3
PSO339G5547 Papaver somniferum HOM05D005396 ORTHO05D006400 3.9e-43 179.1 132 65.2
Os11g0130300 Oryza sativa ssp. japonica HOM05D005396 ORTHO05D006400 6.6e-43 178.3 228 46.9
HPP92_018982 Vanilla planifolia HOM05D005396 ORTHO05D006400 6.6e-43 178.3 229 44.5
CsaV3_4G017330 Cucumis sativus L. HOM05D005396 ORTHO05D006400 2.5e-42 176.4 187 48.7
Dinv36333 Davidia involucrata HOM05D005396 ORTHO05D006400 1.2e-39 167.5 110 72.7
RcHm_v2.0_Chr6g0256561 Rosa chinensis HOM05D005396 ORTHO05D006400 2.9e-38 162.9 113 63.7
Lj2A553G20 Lonicera japonica HOM05D005396 ORTHO05D006400 4.1e-37 159.1 110 67.3
AUR62020162 Chenopodium quinoa HOM05D005396 ORTHO05D006400 2.5e-34 149.8 195 45.1
Psat5g030400 Pisum sativum HOM05D001137 ORTHO05D006400 3.3e-34 149.4 107 61.7
FAN21G3982 Fragaria x ananassa HOM05D005396 ORTHO05D006400 1.1e-32 144.4 110 65.5
BcaC03g13835 Brassica carinata HOM05D005396 ORTHO05D006400 4.0e-32 142.5 193 45.6
Pp3c20_10070 Physcomitrium patens HOM05D005396 ORTHO05D006400 1.2e-31 141.0 198 38.9
BolC2t07101H Brassica oleracea HOM05D005396 ORTHO05D006400 2.0e-31 140.2 192 45.3
BraA02t05620Z Brassica rapa HOM05D005396 ORTHO05D006400 2.0e-31 140.2 146 53.4
BNapus_Darmor_BZH_scaffold_38p01110 Brassica napus HOM05D005396 ORTHO05D006400 1.9e-29 133.7 146 52.1
SEGI_19301 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 2.5e-26 123.2 118 53.4
CBR_g4478 Chara braunii HOM05D005396 ORTHO05D000048 7.3e-26 121.7 183 36.6
AagrBONN_evm.TU.Sc2ySwM_368.35 Anthoceros agrestis HOM05D005396 ORTHO05D006400 1.6e-25 120.6 147 41.5
EL10Ac7g16205 Beta vulgaris HOM05D005396 ORTHO05D006400 2.1e-25 120.2 322 31.4
SMO239G0090 Selaginella moellendorffii HOM05D005396 ORTHO05D006400 2.1e-25 120.2 134 44.0
SHI25366 Sapria himalayana HOM05D005396 ORTHO05D000023 9.0e-24 114.8 154 44.2
EL10Ac7g16203 Beta vulgaris HOM05D005396 ORTHO05D006400 2.9e-22 109.8 107 55.1
Actinidia16276 Actinidia chinensis HOM05D005396 ORTHO05D006400 3.8e-22 109.4 110 54.5
Zm00001eb199750 Zea mays HOM05D005396 ORTHO05D006400 1.1e-21 107.8 104 55.8
EL10Ac7g16214 Beta vulgaris HOM05D005396 ORTHO05D006400 4.2e-21 105.9 212 38.2
EL10Ac7g16209 Beta vulgaris HOM05D005396 ORTHO05D006400 1.9e-18 97.1 146 41.8
unitig_60.g25792 Utricularia gibba HOM05D005396 ORTHO05D006400 4.0e-16 89.4 130 40.0
HanXRQChr08g0223711 Helianthus annuus HOM05D005396 ORTHO05D006400 1.9e-10 70.5 45 64.4
SEGI_06155 Sequoiadendron giganteum HOM05D005396 ORTHO05D006400 1.2e-07 61.2 87 41.4


User provided reference genes

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