Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G098400 Carya illinoinensis HOM05D005544 ORTHO05D007303 9.8e-260 899.8 524 100.0
QL05p077001 Quercus lobata HOM05D005544 ORTHO05D007303 3.0e-232 808.5 523 88.5
QL12p023649 Quercus lobata HOM05D005544 ORTHO05D007303 1.5e-231 806.2 523 88.3
QL12p023600 Quercus lobata HOM05D005544 ORTHO05D007303 2.5e-231 805.4 523 88.1
QL02p074655 Quercus lobata HOM05D005544 ORTHO05D007303 6.8e-229 797.3 523 88.0
Cfa004766 Carpinus fangiana HOM05D005544 ORTHO05D007303 3.4e-228 795.0 521 89.1
Haze_10363 Corylus avellana HOM05D005544 ORTHO05D007303 6.4e-227 790.8 521 88.5
QL12p023632 Quercus lobata HOM05D005544 ORTHO05D007303 1.5e-212 743.0 523 75.9
TWI59G1451 Tripterygium wilfordii HOM05D005544 ORTHO05D007303 4.5e-196 688.3 528 69.9
Potri.014G135600 Populus trichocarpa HOM05D005544 ORTHO05D007303 5.8e-196 688.0 518 72.4
Duzib211G0556 Durio zibethinus HOM05D005544 ORTHO05D007303 1.3e-195 686.8 523 70.7
Ciclev10019671m.g Citrus clementina HOM05D005544 ORTHO05D007303 2.2e-195 686.0 517 72.1
Prupe.1G201800 Prunus persica HOM05D005544 ORTHO05D007303 5.5e-194 681.4 551 76.6
Thecc.01G288500 Theobroma cacao HOM05D005544 ORTHO05D007303 3.5e-193 678.7 521 69.7
MELO3C015885.2 Cucumis melo HOM05D005544 ORTHO05D007303 4.6e-193 678.3 531 77.4
CsaV3_7G028370 Cucumis sativus L. HOM05D005544 ORTHO05D007303 4.6e-193 678.3 530 77.5
CANSAT25G0498 Cannabis sativa HOM05D005544 ORTHO05D007303 1.3e-192 676.8 519 77.8
Sed0004995 Sechium edule HOM05D005544 ORTHO05D007303 5.1e-192 674.9 528 76.5
COL.COLO4_08045 Corchorus olitorius HOM05D005544 ORTHO05D007303 6.7e-192 674.5 523 68.8
Potri.002G213500 Populus trichocarpa HOM05D005544 ORTHO05D007303 3.3e-191 672.2 518 68.9
Manes.02G181800 Manihot esculenta HOM05D005544 ORTHO05D007303 9.6e-191 670.6 524 67.6
Atru.chr5.1295 Acer truncatum HOM05D005544 ORTHO05D007303 1.6e-190 669.8 516 77.7
Sabra14G0102000 Salix brachista HOM05D005544 ORTHO05D007303 4.8e-190 668.3 518 72.4
Cpa.g.sc9.148 Carica papaya HOM05D005544 ORTHO05D007303 6.9e-189 664.5 518 67.8
MD11G1296600 Malus domestica HOM05D005544 ORTHO05D007303 3.8e-187 658.7 550 68.2
VMungo0720G2755 Vigna mungo HOM05D005544 ORTHO05D007303 4.2e-186 655.2 517 66.2
MD03G1274200 Malus domestica HOM05D005544 ORTHO05D007303 1.2e-185 653.7 540 68.0
PGR044G1528 Punica granatum HOM05D005544 ORTHO05D007303 1.0e-184 650.6 519 75.1
PGR088G0006 Punica granatum HOM05D005544 ORTHO05D007303 1.0e-184 650.6 519 75.1
Gohir.D08G054000 Gossypium hirsutum HOM05D005544 ORTHO05D007303 1.3e-184 650.2 523 66.9
Gorai.004G054300 Gossypium raimondii HOM05D005544 ORTHO05D007303 1.3e-184 650.2 523 66.9
RcHm_v2.0_Chr7g0215731 Rosa chinensis HOM05D005544 ORTHO05D007303 2.3e-184 649.4 546 73.6
Gohir.A08G044300 Gossypium hirsutum HOM05D005544 ORTHO05D007303 6.7e-184 647.9 523 66.9
Phvul.007G167300 Phaseolus vulgaris HOM05D005544 ORTHO05D007303 1.9e-183 646.4 517 65.8
Lalb_Chr02g0143021 Lupinus albus HOM05D005544 ORTHO05D007303 1.6e-182 643.3 531 73.6
FAN08G3375 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.0e-179 634.0 547 71.3
FvH4_5g25500 Fragaria vesca HOM05D005544 ORTHO05D007303 8.5e-179 630.9 548 71.5
FAN18G1194 Fragaria x ananassa HOM05D005544 ORTHO05D007303 2.5e-178 629.4 548 71.4
FAN13G2222 Fragaria x ananassa HOM05D005544 ORTHO05D007303 1.0e-176 624.0 547 71.1
Ca_10382_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.3e-176 622.9 521 63.5
Ca_29660_v3 Cicer arietinum L. HOM05D005544 ORTHO05D007303 2.3e-176 622.9 521 63.5
Lj5g0002288 Lotus japonicus HOM05D005544 ORTHO05D007303 5.1e-176 621.7 534 63.5
CSS0033644 Camellia sinensis var. sinensis HOM05D005544 ORTHO05D007303 8.2e-174 614.4 518 62.9
Dinv11286 Davidia involucrata HOM05D005544 ORTHO05D007303 1.1e-173 614.0 515 67.0
TAR362G0205 Trochodendron aralioides HOM05D005544 ORTHO05D007303 3.4e-172 609.0 518 70.8
Rhsim13G0018400 Rhododendron simsii HOM05D005544 ORTHO05D007303 4.5e-172 608.6 523 64.8
Medtr1g089260 Medicago truncatula HOM05D005544 ORTHO05D007303 1.2e-169 600.5 530 61.5
Nitab4.5_0001651g0120 Nicotiana tabacum HOM05D005544 ORTHO05D007303 7.9e-169 597.8 534 62.0
THA.LOC104802213 Tarenaya hassleriana HOM05D005544 ORTHO05D007303 1.8e-168 596.7 519 61.7
Cc01_g20090 Coffea canephora HOM05D005544 ORTHO05D007303 3.0e-168 595.9 524 69.7
Nitab4.5_0009496g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 3.9e-168 595.5 534 62.4
vmacro02516 Vaccinium macrocarpon HOM05D005544 ORTHO05D007303 3.3e-167 592.4 521 61.6
Glyma.02G151500 Glycine max HOM05D005544 ORTHO05D007303 5.7e-167 591.7 522 64.4
Glyma.10G022600 Glycine max HOM05D005544 ORTHO05D007303 1.7e-166 590.1 510 71.6
Nitab4.5_0015534g0010 Nicotiana tabacum HOM05D005544 ORTHO05D007303 2.8e-166 589.3 534 62.0
PGSC0003DMG400043560 Solanum tuberosum HOM05D005544 ORTHO05D007303 1.8e-165 586.6 534 68.0
Sopen05g006280 Solanum pennellii HOM05D005544 ORTHO05D007303 4.1e-165 585.5 534 59.9
Lj1C40T13 Lonicera japonica HOM05D005544 ORTHO05D007303 5.3e-165 585.1 522 61.9
Aa31LG1G29410 Aethionema arabicum HOM05D005544 ORTHO05D007303 9.1e-165 584.3 523 60.0
Lsat_1_v5_gn_5_189761 Lactuca sativa HOM05D005544 ORTHO05D007303 1.2e-164 583.9 521 59.9
DCAR_018371 Daucus carota HOM05D005544 ORTHO05D007303 7.7e-164 581.3 528 68.2
Thhalv10001392m.g Eutrema salsugineum HOM05D005544 ORTHO05D007303 4.0e-160 568.9 525 58.9
ECA248G0063 Erigeron canadensis HOM05D005544 ORTHO05D007303 2.6e-159 566.2 531 59.1
Sp4g29910 Schrenkiella parvula HOM05D005544 ORTHO05D007303 4.4e-159 565.5 526 58.4
HanXRQChr11g0334851 Helianthus annuus HOM05D005544 ORTHO05D007303 9.7e-159 564.3 524 57.6
BolC3t12848H Brassica oleracea HOM05D005544 ORTHO05D007303 1.7e-158 563.5 529 58.8
CAN.G184.38 Capsicum annuum HOM05D005544 ORTHO05D007303 2.8e-158 562.8 535 66.7
Nn4g24755 Nelumbo nucifera HOM05D005544 ORTHO05D007303 2.8e-158 562.8 521 65.8
AUR62042230 Chenopodium quinoa HOM05D005544 ORTHO05D007303 4.8e-158 562.0 523 67.5
Solyc05g010470.4 Solanum lycopersicum HOM05D005544 ORTHO05D007303 3.1e-157 559.3 480 61.0
BcaB02g08729 Brassica carinata HOM05D005544 ORTHO05D007303 4.1e-157 558.9 521 67.9
Actinidia00706 Actinidia chinensis HOM05D005544 ORTHO05D007303 5.3e-157 558.5 518 58.9
Hma1.2p1_0358F.1_g134770 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 5.3e-157 558.5 488 70.1
C03p02930 Brassica napus HOM05D005544 ORTHO05D007303 9.1e-157 557.8 529 58.2
Nn3g18705 Nelumbo nucifera HOM05D005544 ORTHO05D007303 9.1e-157 557.8 521 66.0
AUR62037787 Chenopodium quinoa HOM05D005544 ORTHO05D007303 1.6e-156 557.0 523 67.1
QL12p023536 Quercus lobata HOM05D005544 ORTHO05D007303 1.6e-156 557.0 323 86.7
Ah.09g228790 Amaranthus hybridus HOM05D005544 ORTHO05D007303 3.5e-156 555.8 525 65.1
CARHR143370 Cardamine hirsuta HOM05D005544 ORTHO05D007303 3.8e-155 552.4 523 57.6
Carub.0004s3071 Capsella rubella HOM05D005544 ORTHO05D007303 6.5e-155 551.6 517 58.2
BcaB01g05978 Brassica carinata HOM05D005544 ORTHO05D007303 1.9e-154 550.1 529 57.7
Oeu047906.1 Olea europaea HOM05D005544 ORTHO05D007303 5.5e-154 548.5 526 55.9
AL4G47580 Arabidopsis lyrata HOM05D005544 ORTHO05D007303 2.7e-153 546.2 517 57.6
A03p02590 Brassica napus HOM05D005544 ORTHO05D007303 4.7e-153 545.4 528 57.2
BraA03t09620Z Brassica rapa HOM05D005544 ORTHO05D007303 6.1e-153 545.0 529 57.3
AT2G47990 Arabidopsis thaliana HOM05D005544 ORTHO05D007303 1.8e-152 543.5 520 60.2
SalBow2G1504 Salvia bowleyana HOM05D005544 ORTHO05D007303 8.8e-152 541.2 522 55.7
Sc17g0005190 Simmondsia chinensis HOM05D005544 ORTHO05D007303 8.8e-152 541.2 526 66.3
PSO675G2029 Papaver somniferum HOM05D005544 ORTHO05D007303 2.0e-148 530.0 514 65.2
PSO541G2439 Papaver somniferum HOM05D005544 ORTHO05D007303 3.8e-147 525.8 514 65.0
SGA_v2.0_scaffold172G39056 Striga asiatica HOM05D005544 ORTHO05D007303 1.9e-146 523.5 529 53.5
Hma1.2p1_0358F.1_g134780 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 4.2e-146 522.3 517 65.4
Migut.N02122 Erythranthe guttata HOM05D005544 ORTHO05D007303 2.3e-144 516.5 530 52.6
GSVIVG01011022001 Vitis vinifera HOM05D005544 ORTHO05D007303 1.5e-143 513.8 527 65.1
Migut.O00595 Erythranthe guttata HOM05D005544 ORTHO05D007303 5.7e-143 511.9 530 52.1
Aqoxy2G03155 Aquilegia oxysepala HOM05D005544 ORTHO05D007303 8.3e-142 508.1 521 63.0
Psat6g168560 Pisum sativum HOM05D005544 ORTHO05D007303 7.0e-141 505.0 538 61.3
unitig_22.g6695 Utricularia gibba HOM05D005544 ORTHO05D007303 6.1e-137 491.9 525 48.6
Actinidia24289 Actinidia chinensis HOM05D005544 ORTHO05D007303 8.9e-136 488.0 518 53.7
EL10Ac2g03124 Beta vulgaris HOM05D005544 ORTHO05D007303 9.2e-133 478.0 497 60.4
SHI20711 Sapria himalayana HOM05D005544 ORTHO05D007303 1.4e-128 464.2 512 53.5
MBI11_g11983_MAGBIO Magnolia biondii HOM05D005544 ORTHO05D007303 3.4e-127 459.5 517 51.8
Peaxi162Scf00017g00211 Petunia axillaris HOM05D005544 ORTHO05D007303 2.9e-126 456.4 535 50.7
CDE07G0705 Ceratophyllum demersum HOM05D005544 ORTHO05D007303 6.8e-120 435.3 519 48.7
ATR0691G265 Amborella trichopoda HOM05D005544 ORTHO05D007303 1.6e-116 424.1 523 47.4
Os07g0224900 Oryza sativa ssp. japonica HOM05D005544 ORTHO05D007303 4.4e-111 406.0 536 45.0
Zm00001eb303580 Zea mays HOM05D005544 ORTHO05D007303 4.1e-109 399.4 540 44.6
TPR.G16943 Trifolium pratense HOM05D005544 ORTHO05D007303 2.0e-95 354.0 516 54.7
Sc17g0005180 Simmondsia chinensis HOM05D005544 ORTHO05D007303 5.6e-90 335.9 378 63.2
Pp3c8_11620 Physcomitrium patens HOM05D005544 ORTHO05D007303 3.3e-82 310.1 525 44.8
Sed0004423 Sechium edule HOM05D005544 ORTHO05D007303 2.6e-79 300.4 404 46.0
HPP92_015605 Vanilla planifolia HOM05D005544 ORTHO05D007303 2.6e-79 300.4 274 56.2
Mapoly0066s0060 Marchantia polymorpha HOM05D005544 ORTHO05D007303 3.2e-77 293.5 536 44.0
SMO119G0317 Selaginella moellendorffii HOM05D005544 ORTHO05D007303 4.2e-77 293.1 519 39.5
SEGI_38002 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 1.3e-65 255.0 332 42.5
Cre03.g196850 Chlamydomonas reinhardtii HOM05D005544 ORTHO05D007303 3.4e-63 246.9 507 34.9
Hma1.2p1_1992F.1_g310250 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 1.9e-61 241.1 306 48.0
COL.COLO4_19838 Corchorus olitorius HOM05D005544 ORTHO05D007303 1.1e-48 198.7 220 51.8
PRCOL_00005139 Prasinoderma coloniale HOM05D005544 ORTHO05D007303 7.7e-47 192.6 525 27.8
CBR_g11128 Chara braunii HOM05D005544 ORTHO05D007303 5.5e-45 186.4 422 31.3
Hma1.2p1_3416F.1_g335940 Hydrangea macrophylla HOM05D005544 ORTHO05D007303 3.2e-37 160.6 306 36.6
PGSC0003DMG400036093 Solanum tuberosum HOM05D005544 ORTHO05D007303 4.0e-35 153.7 100 71.0
Sc17g0005170 Simmondsia chinensis HOM05D005544 ORTHO05D007303 2.9e-30 137.5 102 72.5
C04p71990 Brassica napus HOM05D002853 ORTHO05D003030 3.8e-30 137.1 132 53.8
HPP92_015604 Vanilla planifolia HOM05D005544 ORTHO05D007303 1.6e-28 131.7 245 40.8
SalBow3G0398 Salvia bowleyana HOM05D005544 ORTHO05D002055 2.8e-28 131.0 178 42.1
BcaC06g36661 Brassica carinata HOM05D005544 ORTHO05D027614 7.5e-26 122.9 117 57.3
Cfa022606 Carpinus fangiana HOM05D005544 ORTHO05D007303 8.3e-25 119.4 526 27.2
BolC7t40575H Brassica oleracea HOM05D005544 ORTHO05D027614 1.4e-19 102.1 155 44.5
SGA_v2.0_scaffold75G25026 Striga asiatica HOM05D005544 ORTHO05D007303 2.3e-19 101.3 141 42.6
A07p00730 Brassica napus HOM05D005544 ORTHO05D027614 5.2e-19 100.1 155 44.5
CAN.G708.1 Capsicum annuum HOM05D005544 ORTHO05D027614 3.2e-16 90.9 70 65.7
CAN.G111.2 Capsicum annuum HOM05D000002 ORTHO05D000001 5.0e-14 83.6 65 61.5
SGA_v2.0_scaffold419G51287 Striga asiatica HOM05D005544 ORTHO05D007303 1.4e-11 75.5 96 47.9
Nn3g19125 Nelumbo nucifera HOM05D005544 ORTHO05D007303 4.4e-10 70.5 55 61.8
SEGI_41146 Sequoiadendron giganteum HOM05D005544 ORTHO05D007303 5.8e-10 70.1 70 48.6
SGA_v2.0_scaffold175G39332 Striga asiatica HOM05D005544 ORTHO05D007303 4.9e-09 67.0 95 43.2
SGA_v2.0_scaffold45G17255 Striga asiatica HOM05D005544 ORTHO05D007303 6.4e-09 66.6 95 43.2


User provided reference genes

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