Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G094500 Carya illinoinensis HOM05D006016 ORTHO05D007553 7.6e-167 590.5 315 100.0
Cfa006104 Carpinus fangiana HOM05D006016 ORTHO05D007553 4.5e-143 511.5 316 87.7
Haze_04746 Corylus avellana HOM05D006016 ORTHO05D007553 4.5e-143 511.5 316 87.7
QL12p022630 Quercus lobata HOM05D006016 ORTHO05D007553 2.6e-135 485.7 315 82.5
GSVIVG01011095001 Vitis vinifera HOM05D006016 ORTHO05D007553 1.1e-125 453.8 317 79.2
PGR044G1280 Punica granatum HOM05D006016 ORTHO05D007553 3.0e-123 445.7 315 77.5
MD03G1268900 Malus domestica HOM05D006016 ORTHO05D007553 6.3e-121 438.0 317 75.7
Manes.01G210000 Manihot esculenta HOM05D006016 ORTHO05D007553 6.3e-121 438.0 315 75.6
ClCG07G000070 Citrullus lanatus HOM05D006016 ORTHO05D007553 8.3e-121 437.6 319 78.1
Prupe.8G244900 Prunus persica HOM05D006016 ORTHO05D007553 1.1e-120 437.2 315 75.9
COL.COLO4_09142 Corchorus olitorius HOM05D006016 ORTHO05D007553 2.4e-120 436.0 316 75.9
Thecc.01G283800 Theobroma cacao HOM05D006016 ORTHO05D007553 2.4e-120 436.0 315 78.4
Duzib138G0992 Durio zibethinus HOM05D006016 ORTHO05D007553 1.6e-119 433.3 317 76.3
CANSAT80G0718 Cannabis sativa HOM05D006016 ORTHO05D007553 7.7e-119 431.0 312 76.6
MD11G1289700 Malus domestica HOM05D006016 ORTHO05D007553 1.7e-118 429.9 317 74.8
Sed0013000 Sechium edule HOM05D006016 ORTHO05D007553 5.0e-118 428.3 317 77.3
Eucgr.K03393 Eucalyptus grandis HOM05D006016 ORTHO05D007553 6.5e-118 427.9 302 81.5
Eucgr.K03395 Eucalyptus grandis HOM05D006016 ORTHO05D007553 1.9e-117 426.4 297 79.8
Gorai.004G083400 Gossypium raimondii HOM05D006016 ORTHO05D007553 7.2e-117 424.5 322 75.2
RcHm_v2.0_Chr1g0321311 Rosa chinensis HOM05D006016 ORTHO05D007553 2.8e-116 422.5 306 74.8
Potri.014G138500 Populus trichocarpa HOM05D006016 ORTHO05D007553 3.6e-116 422.2 325 69.2
MELO3C014346.2 Cucumis melo HOM05D006016 ORTHO05D007553 8.0e-116 421.0 320 75.6
Oeu011169.1 Olea europaea HOM05D006016 ORTHO05D007553 1.0e-115 420.6 318 71.1
FvH4_7g02610 Fragaria vesca HOM05D006016 ORTHO05D007553 5.2e-115 418.3 320 72.2
Hma1.2p1_0628F.1_g191900 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 5.2e-115 418.3 257 86.0
Nn1g02145 Nelumbo nucifera HOM05D006016 ORTHO05D007553 6.8e-115 417.9 320 72.8
CSS0041846 Camellia sinensis var. sinensis HOM05D006016 ORTHO05D007553 8.8e-115 417.5 315 73.0
Gohir.A08G069800 Gossypium hirsutum HOM05D006016 ORTHO05D007553 8.8e-115 417.5 317 74.4
Ciclev10020923m.g Citrus clementina HOM05D006016 ORTHO05D007553 8.3e-113 411.0 317 74.1
Aqoxy2G03243 Aquilegia oxysepala HOM05D006016 ORTHO05D007553 1.8e-112 409.8 315 69.2
SGA_v2.0_scaffold1G00448 Striga asiatica HOM05D006016 ORTHO05D007553 3.1e-112 409.1 335 69.6
FAN03G2867 Fragaria x ananassa HOM05D006016 ORTHO05D007553 4.1e-112 408.7 331 69.8
Atru.chr5.1361 Acer truncatum HOM05D006016 ORTHO05D007553 7.0e-112 407.9 315 72.7
Glyma.10G024400 Glycine max HOM05D006016 ORTHO05D007553 1.2e-111 407.1 310 72.9
Nitab4.5_0006180g0080 Nicotiana tabacum HOM05D006016 ORTHO05D007553 7.8e-111 404.4 318 70.4
Hund06953 Selenicereus undatus HOM05D006016 ORTHO05D007553 1.0e-110 404.1 323 71.2
Nitab4.5_0007392g0030 Nicotiana tabacum HOM05D006016 ORTHO05D007553 1.3e-110 403.7 318 68.9
Ca_09774_v3 Cicer arietinum L. HOM05D006016 ORTHO05D007553 2.9e-110 402.5 300 75.3
TPR.G1544 Trifolium pratense HOM05D000563 ORTHO05D000536 5.0e-110 401.7 307 74.6
DCAR_002754 Daucus carota HOM05D006016 ORTHO05D007553 1.1e-109 400.6 319 69.9
MSTRG.18215 Avicennia marina HOM05D006016 ORTHO05D007553 3.3e-109 399.1 317 71.0
arahy.Tifrunner.gnm1.ann1.NXI6YJ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.3e-109 397.9 274 75.2
CARHR124900 Cardamine hirsuta HOM05D006016 ORTHO05D007553 7.3e-109 397.9 321 68.8
Cpa.g.sc485.5 Carica papaya HOM05D006016 ORTHO05D007553 1.2e-108 397.1 249 85.1
arahy.Tifrunner.gnm1.ann1.Q6PPUG Arachis hypogaea HOM05D006016 ORTHO05D007553 1.6e-108 396.7 274 74.1
PGSC0003DMG400000944 Solanum tuberosum HOM05D006016 ORTHO05D007553 1.6e-108 396.7 279 77.8
EL10Ac4g09090 Beta vulgaris HOM05D006016 ORTHO05D007553 2.8e-108 396.0 284 72.2
PSO407G0301 Papaver somniferum HOM05D006016 ORTHO05D007553 2.8e-108 396.0 283 71.4
FAN01G1545 Fragaria x ananassa HOM05D006016 ORTHO05D007553 3.6e-108 395.6 320 69.4
TAR633G0970 Trochodendron aralioides HOM05D006016 ORTHO05D007553 3.6e-108 395.6 249 86.3
BcaB02g08738 Brassica carinata HOM05D006016 ORTHO05D007553 4.7e-108 395.2 275 76.0
AUR62004906 Chenopodium quinoa HOM05D006016 ORTHO05D007553 4.7e-108 395.2 282 72.0
Thhalv10001558m.g Eutrema salsugineum HOM05D006016 ORTHO05D007553 6.1e-108 394.8 276 76.1
PSO170G1401 Papaver somniferum HOM05D006016 ORTHO05D007553 6.1e-108 394.8 327 65.1
ATR0626G088 Amborella trichopoda HOM05D006016 ORTHO05D007553 1.0e-107 394.0 266 76.7
CsaV3_6G036870 Cucumis sativus L. HOM05D006016 ORTHO05D007553 1.8e-107 393.3 320 72.2
Medtr1g072640 Medicago truncatula HOM05D006016 ORTHO05D007553 1.8e-107 393.3 306 71.9
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 2.0e-106 389.8 285 74.7
Solyc09g064790.3 Solanum lycopersicum HOM05D006016 ORTHO05D007553 3.4e-106 389.0 292 74.3
BraA05t18997Z Brassica rapa HOM05D006016 ORTHO05D007553 4.4e-106 388.7 305 71.1
Carub.0004s3083 Capsella rubella HOM05D006016 ORTHO05D007553 1.3e-105 387.1 286 73.1
Sopen09g026490 Solanum pennellii HOM05D006016 ORTHO05D007553 2.9e-105 386.0 318 69.5
Sp4g30040 Schrenkiella parvula HOM05D006016 ORTHO05D007553 4.9e-105 385.2 287 72.8
Lalb_Chr21g0306561 Lupinus albus HOM05D006016 ORTHO05D007553 6.4e-105 384.8 309 71.5
Cc02_g34480 Coffea canephora HOM05D006016 ORTHO05D007553 1.4e-104 383.6 323 68.4
CAN.G962.6 Capsicum annuum HOM05D006016 ORTHO05D007553 4.1e-104 382.1 278 74.8
Peaxi162Scf00104g00220 Petunia axillaris HOM05D006016 ORTHO05D007553 4.1e-104 382.1 285 70.9
CDE01G0302 Ceratophyllum demersum HOM05D006016 ORTHO05D007553 9.2e-104 380.9 315 67.9
THA.LOC104823056 Tarenaya hassleriana HOM05D006016 ORTHO05D007553 1.3e-102 377.1 319 68.0
AUR62032753 Chenopodium quinoa HOM05D006016 ORTHO05D007553 1.7e-102 376.7 247 77.3
BolC4t21679H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-102 376.3 295 70.8
Migut.D00263 Erythranthe guttata HOM05D006016 ORTHO05D007553 3.9e-102 375.6 303 66.3
BolSC55t61226H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-102 374.8 295 70.5
Aa31LG4G3290 Aethionema arabicum HOM05D006016 ORTHO05D007553 1.9e-101 373.2 278 72.3
AL4G47720 Arabidopsis lyrata HOM05D006016 ORTHO05D007553 3.3e-101 372.5 285 71.6
A05p00010 Brassica napus HOM05D006016 ORTHO05D007553 7.3e-101 371.3 296 70.6
arahy.Tifrunner.gnm1.ann1.95RMVD Arachis hypogaea HOM05D006016 ORTHO05D007553 2.1e-100 369.8 263 72.6
Rhsim01G0276200 Rhododendron simsii HOM05D006016 ORTHO05D007553 4.0e-99 365.5 398 54.8
SalBow4G2498 Salvia bowleyana HOM05D006016 ORTHO05D007553 3.4e-98 362.5 280 68.9
HanXRQChr01g0002401 Helianthus annuus HOM05D006016 ORTHO05D007553 1.3e-97 360.5 316 63.3
TWI14G0073 Tripterygium wilfordii HOM05D006016 ORTHO05D007553 2.2e-97 359.8 316 64.9
Phvul.007G169400 Phaseolus vulgaris HOM05D006016 ORTHO05D007553 2.9e-97 359.4 308 69.5
Lj5g0023557 Lotus japonicus HOM05D006016 ORTHO05D007553 8.3e-97 357.8 284 72.2
BcaC02g12797 Brassica carinata HOM05D006016 ORTHO05D007553 1.4e-96 357.1 276 72.1
Lj2C1178T3 Lonicera japonica HOM05D006016 ORTHO05D007553 1.4e-96 357.1 225 81.3
Lsat_1_v5_gn_5_187441 Lactuca sativa HOM05D006016 ORTHO05D007553 4.1e-96 355.5 292 65.8
unitig_61.g26325 Utricularia gibba HOM05D006016 ORTHO05D007553 4.1e-96 355.5 316 63.6
Sabra14G0104500 Salix brachista HOM05D006016 ORTHO05D007553 2.3e-94 349.7 324 60.8
BolSC55t61222H Brassica oleracea HOM05D006016 ORTHO05D007553 6.6e-94 348.2 269 70.6
HPP92_025128 Vanilla planifolia HOM05D006016 ORTHO05D007553 5.6e-93 345.1 288 65.3
ECA248G0902 Erigeron canadensis HOM05D006016 ORTHO05D007553 2.1e-92 343.2 298 62.4
Gohir.D08G079100 Gossypium hirsutum HOM05D006016 ORTHO05D007553 1.4e-91 340.5 317 65.0
BNapus_Darmor_BZH_scaffold_188p00120 Brassica napus HOM05D006016 ORTHO05D007553 2.3e-91 339.7 225 76.9
BNapus_Darmor_BZH_scaffold_188p00130 Brassica napus HOM05D006016 ORTHO05D007553 2.3e-91 339.7 225 76.9
Os05g0393400 Oryza sativa ssp. japonica HOM05D006016 ORTHO05D007553 1.5e-90 337.0 303 58.7
AT2G48120 Arabidopsis thaliana HOM05D006016 ORTHO05D007553 2.2e-89 333.2 228 73.7
Psat6g138080 Pisum sativum HOM05D006016 ORTHO05D007553 1.4e-88 330.5 228 76.8
BcaC02g12566 Brassica carinata HOM05D006016 ORTHO05D007553 2.3e-86 323.2 277 67.5
Zm00001eb287380 Zea mays HOM05D006016 ORTHO05D007553 3.0e-86 322.8 249 67.1
Dinv32962 Davidia involucrata HOM05D006016 ORTHO05D007553 4.3e-85 318.9 185 86.5
vmacro14936 Vaccinium macrocarpon HOM05D006016 ORTHO05D007553 1.9e-80 303.5 321 59.2
Hma1.2p1_0628F.1_g191890 Hydrangea macrophylla HOM05D006016 ORTHO05D007553 7.1e-80 301.6 236 72.0
arahy.Tifrunner.gnm1.ann1.9IJ3BZ Arachis hypogaea HOM05D006016 ORTHO05D007553 7.8e-79 298.1 287 58.9
QL10p008835 Quercus lobata HOM05D006016 ORTHO05D007553 7.3e-77 291.6 190 84.2
SEGI_37912 Sequoiadendron giganteum HOM05D006016 ORTHO05D007553 4.7e-76 288.9 259 61.0
BolSC55t61219H Brassica oleracea HOM05D006016 ORTHO05D007553 2.3e-70 270.0 184 77.7
Actinidia21099 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.3e-69 265.8 261 60.5
BolSC55t61223H Brassica oleracea HOM05D006016 ORTHO05D007553 1.1e-64 251.1 211 67.3
SMO360G0019 Selaginella moellendorffii HOM05D006016 ORTHO05D007553 1.3e-60 237.7 253 50.2
Mapoly0059s0024 Marchantia polymorpha HOM05D006016 ORTHO05D007553 1.8e-59 233.8 276 47.5
Pp3c5_15510 Physcomitrium patens HOM05D006016 ORTHO05D007553 6.4e-57 225.3 251 52.6
Lj9C654T2 Lonicera japonica HOM05D006016 ORTHO05D007553 3.8e-49 199.5 192 56.8
Glyma.02G149402 Glycine max HOM05D006016 ORTHO05D007553 1.1e-48 198.0 165 69.7
BraA05t18995Z Brassica rapa HOM05D006016 ORTHO05D007553 9.7e-45 184.9 128 71.9
AagrBONN_evm.TU.Sc2ySwM_228.5509 Anthoceros agrestis HOM05D006016 ORTHO05D007553 4.5e-42 176.0 195 47.2
BNapus_Darmor_BZH_scaffold_188p00100 Brassica napus HOM05D006016 ORTHO05D007553 1.1e-40 171.4 125 69.6
Actinidia24878 Actinidia chinensis HOM05D006016 ORTHO05D007553 4.5e-34 149.4 183 50.3
BNapus_Darmor_BZH_scaffold_188p00090 Brassica napus HOM05D001484 ORTHO05D007553 1.7e-33 147.5 115 73.9
Oeu001432.1 Olea europaea HOM05D006016 ORTHO05D007553 2.7e-31 140.2 98 71.4
QL09p051040 Quercus lobata HOM05D006016 ORTHO05D007553 2.4e-27 127.1 120 60.8
CBR_g23747 Chara braunii HOM05D006016 ORTHO05D007553 5.9e-26 122.5 238 36.6
AUR62004907 Chenopodium quinoa HOM05D006016 ORTHO05D007553 9.4e-24 115.2 78 74.4
QL09p050526 Quercus lobata HOM05D006016 ORTHO05D337571 2.8e-20 103.6 101 57.4
BcaC08g43234 Brassica carinata HOM05D006016 ORTHO05D007553 7.0e-19 99.0 74 62.2
MBI04_g32261_MAGBIO Magnolia biondii HOM05D006016 ORTHO05D007553 1.4e-14 84.7 72 63.9
Dinv13370 Davidia involucrata HOM05D006016 ORTHO05D007553 1.6e-10 71.2 129 39.5
QL09p050966 Quercus lobata HOM05D001484 ORTHO05D001564 5.0e-09 66.2 34 79.4
vmacro10242 Vaccinium macrocarpon HOM05D002150 ORTHO05D002191 1.1e-08 65.1 200 35.0
Medtr1g072620 Medicago truncatula HOM05D006016 ORTHO05D007553 1.5e-08 64.7 50 66.0
Lj9C654T3 Lonicera japonica HOM05D006016 ORTHO05D007553 7.2e-08 62.4 46 73.9
Dinv01676 Davidia involucrata HOM05D006016 ORTHO05D007553 1.6e-07 61.2 65 55.4
BolC6t35694H Brassica oleracea HOM05D006016 ORTHO05D007553 6.1e-07 59.3 46 71.7
Dinv16891 Davidia involucrata HOM05D006016 ORTHO05D007553 6.1e-07 59.3 65 58.5


User provided reference genes

Program Settings