Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G044400 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.3e-105 386.3 188 100.0
CiPaw.07G045200 Carya illinoinensis HOM05D005334 ORTHO05D006560 6.5e-73 277.7 149 92.6
CiPaw.07G045000 Carya illinoinensis HOM05D005334 ORTHO05D006560 1.0e-70 270.4 145 92.4
CiPaw.07G049700 Carya illinoinensis HOM05D005334 ORTHO05D006560 4.1e-67 258.5 190 72.6
Cfa006855 Carpinus fangiana HOM05D005334 ORTHO05D006560 1.2e-58 230.3 146 81.5
Haze_03908 Corylus avellana HOM05D005334 ORTHO05D006560 1.6e-58 229.9 146 81.5
QL06p036434 Quercus lobata HOM05D005334 ORTHO05D006560 9.5e-56 220.7 146 78.8
CSS0002721 Camellia sinensis var. sinensis HOM05D005334 ORTHO05D006560 3.4e-53 212.2 150 70.0
Cpa.g.sc19.179 Carica papaya HOM05D005334 ORTHO05D006560 2.9e-52 209.1 145 73.1
TAR625G0036 Trochodendron aralioides HOM05D005334 ORTHO05D006560 4.9e-52 208.4 148 71.6
Rhsim04G0113300 Rhododendron simsii HOM05D005334 ORTHO05D006560 6.4e-52 208.0 150 70.7
Actinidia05483 Actinidia chinensis HOM05D005334 ORTHO05D006560 3.2e-51 205.7 150 67.3
Prupe.1G076500 Prunus persica HOM05D005334 ORTHO05D006560 5.4e-51 204.9 144 72.9
Ciclev10008278m.g Citrus clementina HOM05D005334 ORTHO05D006560 9.2e-51 204.1 149 72.5
FAN23G0357 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-50 203.8 148 71.6
FAN23G0783 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-50 203.8 145 72.4
FAN26G1496 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.2e-50 203.8 145 72.4
Thecc.10G018300 Theobroma cacao HOM05D005334 ORTHO05D006560 1.6e-50 203.4 146 73.3
CANSAT01G0836 Cannabis sativa HOM05D005334 ORTHO05D006560 2.0e-50 203.0 148 72.3
MD01G1042400 Malus domestica HOM05D005334 ORTHO05D006560 2.0e-50 203.0 142 72.5
Lj2C525G9 Lonicera japonica HOM05D005334 ORTHO05D006560 3.5e-50 202.2 146 71.2
RcHm_v2.0_Chr6g0270301 Rosa chinensis HOM05D005334 ORTHO05D006560 4.6e-50 201.8 145 71.7
RcHm_v2.0_Chr6g0270401 Rosa chinensis HOM05D005334 ORTHO05D006560 4.6e-50 201.8 145 71.7
GSVIVG01003946001 Vitis vinifera HOM05D005334 ORTHO05D006560 4.6e-50 201.8 186 59.7
PSO700G0130 Papaver somniferum HOM05D005334 ORTHO05D006560 5.9e-50 201.4 142 69.0
Dinv36960 Davidia involucrata HOM05D005334 ORTHO05D006560 7.8e-50 201.1 150 70.0
FAN19G2596 Fragaria x ananassa HOM05D005334 ORTHO05D006560 7.8e-50 201.1 149 70.5
vmacro09003 Vaccinium macrocarpon HOM05D005334 ORTHO05D006560 7.8e-50 201.1 150 68.7
FvH4_7g07230 Fragaria vesca HOM05D005334 ORTHO05D006560 1.0e-49 200.7 145 72.4
FvH4_1g19290 Fragaria vesca HOM05D005334 ORTHO05D006560 1.3e-49 200.3 145 71.7
Potri.010G189500 Populus trichocarpa HOM05D005334 ORTHO05D006560 1.7e-49 199.9 148 68.2
Nn5g29815 Nelumbo nucifera HOM05D005334 ORTHO05D006560 2.3e-49 199.5 146 69.2
Duzib128G0185 Durio zibethinus HOM05D005334 ORTHO05D006560 3.9e-49 198.7 151 66.9
Ciclev10008715m.g Citrus clementina HOM05D005334 ORTHO05D006560 8.6e-49 197.6 149 71.1
Hma1.2p1_0964F.1_g242010 Hydrangea macrophylla HOM05D005334 ORTHO05D006560 1.1e-48 197.2 162 64.2
Hund14075 Selenicereus undatus HOM05D005334 ORTHO05D006560 1.5e-48 196.8 145 71.0
Manes.10G013400 Manihot esculenta HOM05D005334 ORTHO05D006560 3.3e-48 195.7 148 68.9
PSO761G0425 Papaver somniferum HOM05D005334 ORTHO05D006560 3.3e-48 195.7 143 68.5
Lj3g0001207 Lotus japonicus HOM05D005334 ORTHO05D006560 7.3e-48 194.5 138 72.5
TWI34G1275 Tripterygium wilfordii HOM05D005334 ORTHO05D006560 7.3e-48 194.5 139 71.9
Gorai.008G084700 Gossypium raimondii HOM05D005334 ORTHO05D006560 2.1e-47 193.0 139 71.9
PSO832G1169 Papaver somniferum HOM05D005334 ORTHO05D006560 2.8e-47 192.6 142 69.0
AUR62003692 Chenopodium quinoa HOM05D005334 ORTHO05D006560 3.6e-47 192.2 142 70.4
ClCG01G018260 Citrullus lanatus HOM05D005334 ORTHO05D006560 3.6e-47 192.2 141 71.6
CsaV3_6G044840 Cucumis sativus L. HOM05D005334 ORTHO05D006560 3.6e-47 192.2 141 70.9
Sabra10G0146100 Salix brachista HOM05D005334 ORTHO05D006560 4.7e-47 191.8 138 70.3
AUR62018003 Chenopodium quinoa HOM05D005334 ORTHO05D006560 6.2e-47 191.4 142 70.4
Lsat_1_v5_gn_8_12861 Lactuca sativa HOM05D005334 ORTHO05D006560 6.2e-47 191.4 139 69.8
Migut.K00814 Erythranthe guttata HOM05D005334 ORTHO05D006560 8.0e-47 191.0 137 70.8
MELO3C007703.2 Cucumis melo HOM05D005334 ORTHO05D006560 1.1e-46 190.7 141 70.2
arahy.Tifrunner.gnm1.ann1.DY9T0P Arachis hypogaea HOM05D005334 ORTHO05D006560 1.4e-46 190.3 138 69.6
Cc07_g13790 Coffea canephora HOM05D005334 ORTHO05D006560 1.4e-46 190.3 135 71.1
Gohir.D12G076300 Gossypium hirsutum HOM05D005334 ORTHO05D006560 1.8e-46 189.9 139 71.2
Aqoxy6G01573 Aquilegia oxysepala HOM05D005334 ORTHO05D006560 2.3e-46 189.5 138 68.8
arahy.Tifrunner.gnm1.ann1.D5QNLH Arachis hypogaea HOM05D005334 ORTHO05D006560 2.3e-46 189.5 138 70.3
SGA_v2.0_scaffold45G17221 Striga asiatica HOM05D005334 ORTHO05D006560 3.1e-46 189.1 139 70.5
Eucgr.A00094 Eucalyptus grandis HOM05D005334 ORTHO05D006560 5.2e-46 188.3 146 67.8
MSTRG.3723 Avicennia marina HOM05D005334 ORTHO05D006560 6.8e-46 188.0 144 68.1
PGR031G2068 Punica granatum HOM05D005334 ORTHO05D006560 6.8e-46 188.0 146 64.4
VMungo0331G1245 Vigna mungo HOM05D005334 ORTHO05D006560 6.8e-46 188.0 138 71.0
HanXRQChr08g0226671 Helianthus annuus HOM05D005334 ORTHO05D006560 8.9e-46 187.6 138 68.1
ECA233G4415 Erigeron canadensis HOM05D005334 ORTHO05D006560 1.5e-45 186.8 139 67.6
Sed0026061 Sechium edule HOM05D005334 ORTHO05D006560 3.4e-45 185.7 145 68.3
Sc03g0000510 Simmondsia chinensis HOM05D005334 ORTHO05D006560 3.4e-45 185.7 149 63.8
Medtr8g007340 Medicago truncatula HOM05D005334 ORTHO05D006560 5.8e-45 184.9 147 63.3
SalBow5G3116 Salvia bowleyana HOM05D005334 ORTHO05D006560 5.8e-45 184.9 144 69.4
CAN.G1813.2 Capsicum annuum HOM05D005334 ORTHO05D006560 7.5e-45 184.5 137 68.6
CiPaw.07G044700 Carya illinoinensis HOM05D005334 ORTHO05D006560 7.5e-45 184.5 100 92.0
Phvul.010G045900 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 7.5e-45 184.5 137 70.1
Phvul.010G046100 Phaseolus vulgaris HOM05D005334 ORTHO05D006560 7.5e-45 184.5 137 70.1
Ca_14799_v3 Cicer arietinum L. HOM05D005334 ORTHO05D006560 9.8e-45 184.1 139 69.8
Solyc11g010950.2 Solanum lycopersicum HOM05D005334 ORTHO05D006560 9.8e-45 184.1 140 66.4
Sopen11g005690 Solanum pennellii HOM05D005334 ORTHO05D006560 9.8e-45 184.1 137 67.9
Peaxi162Scf00085g00115 Petunia axillaris HOM05D005334 ORTHO05D006560 1.7e-44 183.3 136 67.6
Ah.02g123390 Amaranthus hybridus HOM05D005334 ORTHO05D006560 2.2e-44 183.0 139 68.3
PGSC0003DMG400016186 Solanum tuberosum HOM05D005334 ORTHO05D006560 2.2e-44 183.0 137 67.9
SalBow5G4670 Salvia bowleyana HOM05D005334 ORTHO05D006560 2.9e-44 182.6 144 68.8
Glyma.13G008300 Glycine max HOM05D005334 ORTHO05D006560 3.7e-44 182.2 138 71.7
Nitab4.5_0000402g0140 Nicotiana tabacum HOM05D005334 ORTHO05D006560 3.7e-44 182.2 137 68.6
Glyma.03G108600 Glycine max HOM05D005334 ORTHO05D006560 1.1e-43 180.6 138 69.6
TPR.G11130 Trifolium pratense HOM05D005334 ORTHO05D006560 1.9e-43 179.9 146 63.0
Lsat_1_v5_gn_6_15620 Lactuca sativa HOM05D005334 ORTHO05D006560 2.4e-43 179.5 148 63.5
Psat4g223080 Pisum sativum HOM05D005334 ORTHO05D006560 2.4e-43 179.5 139 67.6
CARHR085780 Cardamine hirsuta HOM05D005334 ORTHO05D006560 6.0e-42 174.9 144 64.6
Thhalv10021017m.g Eutrema salsugineum HOM05D005334 ORTHO05D006560 7.8e-42 174.5 143 62.9
Aa31LG3G4530 Aethionema arabicum HOM05D005334 ORTHO05D006560 1.0e-41 174.1 138 63.8
AL3G22740 Arabidopsis lyrata HOM05D005334 ORTHO05D006560 1.7e-41 173.3 146 62.3
DCAR_003438 Daucus carota HOM05D005334 ORTHO05D006560 1.7e-41 173.3 122 71.3
Carub.0003s1053 Capsella rubella HOM05D005334 ORTHO05D006560 2.3e-41 172.9 142 62.0
A05p38080 Brassica napus HOM05D005334 ORTHO05D006560 3.0e-41 172.6 144 63.9
BolC5t34351H Brassica oleracea HOM05D005334 ORTHO05D006560 3.0e-41 172.6 144 63.9
Sp3g09500 Schrenkiella parvula HOM05D005334 ORTHO05D006560 3.0e-41 172.6 143 62.2
AT3G11220 Arabidopsis thaliana HOM05D005334 ORTHO05D006560 3.9e-41 172.2 145 62.1
BcaC05g29390 Brassica carinata HOM05D005334 ORTHO05D006560 5.0e-41 171.8 144 63.9
C05p56870 Brassica napus HOM05D005334 ORTHO05D006560 5.0e-41 171.8 144 63.9
Lsat_1_v5_gn_4_105120 Lactuca sativa HOM05D005334 ORTHO05D006560 6.6e-41 171.4 139 65.5
Lj6g0009802 Lotus japonicus HOM05D005334 ORTHO05D006560 6.6e-41 171.4 138 66.7
BraA05t22600Z Brassica rapa HOM05D005334 ORTHO05D006560 1.1e-40 170.6 144 63.2
SHI03443 Sapria himalayana HOM05D005334 ORTHO05D006560 1.1e-40 170.6 147 61.9
Lsat_1_v5_gn_4_67481 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-39 166.8 139 63.3
THA.LOC104816551 Tarenaya hassleriana HOM05D005334 ORTHO05D006560 1.4e-38 163.7 143 60.8
Lalb_Chr12g0210501 Lupinus albus HOM05D005334 ORTHO05D006560 2.3e-38 162.9 129 66.7
unitig_0.g2648 Utricularia gibba HOM05D005334 ORTHO05D006560 2.6e-37 159.5 113 69.0
CDE04G2384 Ceratophyllum demersum HOM05D005334 ORTHO05D006560 4.1e-35 152.1 148 58.1
Os06g0639600 Oryza sativa ssp. japonica HOM05D005334 ORTHO05D006560 7.1e-35 151.4 118 61.9
PSO013G0112 Papaver somniferum HOM05D005334 ORTHO05D006560 2.1e-34 149.8 98 72.4
Prupe.6G206700 Prunus persica HOM05D005334 ORTHO05D006560 3.5e-34 149.1 144 59.0
Lsat_1_v5_gn_1_79261 Lactuca sativa HOM05D005334 ORTHO05D006560 8.1e-31 137.9 139 56.1
SEGI_17743 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 5.2e-30 135.2 148 48.6
COL.COLO4_25710 Corchorus olitorius HOM05D005334 ORTHO05D006560 1.5e-29 133.7 90 73.3
Zm00001eb387250 Zea mays HOM05D005334 ORTHO05D006560 5.8e-29 131.7 141 51.1
Atru.chr12.1050 Acer truncatum HOM05D005334 ORTHO05D006560 1.3e-28 130.6 89 70.8
Mapoly0006s0234 Marchantia polymorpha HOM05D005334 ORTHO05D006560 2.2e-28 129.8 117 56.4
Pp3c9_23940 Physcomitrium patens HOM05D005334 ORTHO05D006560 2.4e-27 126.3 113 54.9
Lsat_1_v5_gn_5_29040 Lactuca sativa HOM05D005334 ORTHO05D006560 1.6e-26 123.6 139 53.2
HPP92_008022 Vanilla planifolia HOM05D005334 ORTHO05D006560 7.8e-26 121.3 101 58.4
FAN03G2380 Fragaria x ananassa HOM05D005334 ORTHO05D006560 1.3e-25 120.6 152 48.7
AagrBONN_evm.TU.Sc2ySwM_117.1770 Anthoceros agrestis HOM05D005334 ORTHO05D006560 2.3e-25 119.8 114 51.8
MBI10_g34777_MAGBIO Magnolia biondii HOM05D005334 ORTHO05D006560 8.6e-25 117.9 82 70.7
SEGI_40300 Sequoiadendron giganteum HOM05D005334 ORTHO05D006560 2.5e-24 116.3 109 52.3
ATR1153G009 Amborella trichopoda HOM05D005334 ORTHO05D006560 2.6e-21 106.3 94 56.4
Dinv27014 Davidia involucrata HOM05D005334 ORTHO05D006560 1.0e-17 94.4 71 67.6
Thecc.09G278800 Theobroma cacao HOM05D005334 ORTHO05D006560 5.1e-17 92.0 146 41.1
Cre03.g196000 Chlamydomonas reinhardtii HOM05D005334 ORTHO05D006560 9.0e-14 81.3 112 37.5
SMO146G0066 Selaginella moellendorffii HOM05D005334 ORTHO05D006560 6.4e-12 75.1 85 48.2
RcHm_v2.0_Chr2g0110581 Rosa chinensis HOM05D005334 ORTHO05D006560 1.8e-06 57.0 48 56.2


User provided reference genes

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