Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.07G027500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.7e-41 172.2 83 100.0
CiPaw.14G001100 Carya illinoinensis HOM05D003916 ORTHO05D004655 3.3e-29 131.3 82 76.8
DCAR_022384 Daucus carota HOM05D003916 ORTHO05D004655 7.4e-29 130.2 75 80.0
HanXRQChr01g0016491 Helianthus annuus HOM05D003916 ORTHO05D004655 7.4e-29 130.2 75 80.0
CSS0038705 Camellia sinensis var. sinensis HOM05D003916 ORTHO05D004655 9.7e-29 129.8 75 78.7
Psat0s2770g0080 Pisum sativum HOM05D003916 ORTHO05D004655 9.7e-29 129.8 75 78.7
Thecc.01G409200 Theobroma cacao HOM05D003916 ORTHO05D004655 9.7e-29 129.8 75 78.7
TPR.G3662 Trifolium pratense HOM05D003916 ORTHO05D004655 9.7e-29 129.8 75 78.7
CiPaw.13G006500 Carya illinoinensis HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 80.0
COL.COLO4_04866 Corchorus olitorius HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Dinv43429 Davidia involucrata HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Duzib138G1764 Durio zibethinus HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Eucgr.G03369 Eucalyptus grandis HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
FvH4_2g07830 Fragaria vesca HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
FAN15G2464 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
FAN20G2116 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
FAN24G3392 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
FAN27G3016 Fragaria x ananassa HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Hma1.2p1_0184F.1_g081310 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 77.3
MD05G1071600 Malus domestica HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
MD10G1083600 Malus domestica HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Medtr6g004540 Medicago truncatula HOM05D003916 ORTHO05D004655 1.3e-28 129.4 76 78.9
Prupe.8G106600 Prunus persica HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
PGR031G2324 Punica granatum HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
THA.LOC104801974 Tarenaya hassleriana HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
GSVIVG01036004001 Vitis vinifera HOM05D003916 ORTHO05D004655 1.3e-28 129.4 75 78.7
Atru.chr11.2605 Acer truncatum HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 77.3
Cfa010792 Carpinus fangiana HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 78.7
Haze_03179 Corylus avellana HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 78.7
Hma1.2p1_0495F.1_g165640 Hydrangea macrophylla HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 77.3
Lj3g0019679 Lotus japonicus HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 78.7
Rhsim07G0056500 Rhododendron simsii HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 77.3
vmacro13676 Vaccinium macrocarpon HOM05D003916 ORTHO05D004655 1.7e-28 129.0 75 77.3
Actinidia19401 Actinidia chinensis HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
Aqoxy3G00363 Aquilegia oxysepala HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
arahy.Tifrunner.gnm1.ann1.8R0KJ7 Arachis hypogaea HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 78.7
arahy.Tifrunner.gnm1.ann1.YBFT0T Arachis hypogaea HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 78.7
COL.COLO4_11374 Corchorus olitorius HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
MBI04_g41600_MAGBIO Magnolia biondii HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
Medtr4g037750 Medicago truncatula HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
QL04p008135 Quercus lobata HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
QL04p008511 Quercus lobata HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
TAR636G0073 Trochodendron aralioides HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 76.0
Zm00001eb214480 Zea mays HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
Zm00001eb247210 Zea mays HOM05D003916 ORTHO05D004655 2.2e-28 128.6 75 77.3
Lalb_Chr03g0040011 Lupinus albus HOM05D003916 ORTHO05D004655 2.8e-28 128.3 75 76.0
Manes.07G007100 Manihot esculenta HOM05D003916 ORTHO05D004655 2.8e-28 128.3 75 78.7
Potri.009G070900 Populus trichocarpa HOM05D003916 ORTHO05D004655 2.8e-28 128.3 75 78.7
Sed0020332 Sechium edule HOM05D003916 ORTHO05D004655 2.8e-28 128.3 75 77.3
TWI09G0558 Tripterygium wilfordii HOM05D003916 ORTHO05D004655 2.8e-28 128.3 75 77.3
ClCG10G012300 Citrullus lanatus HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 77.3
Ciclev10033103m.g Citrus clementina HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 77.3
MELO3C023983.2 Cucumis melo HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 77.3
CsaV3_3G032080 Cucumis sativus L. HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 77.3
ECA234G4622 Erigeron canadensis HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 78.7
Os07g0172500 Oryza sativa ssp. japonica HOM05D003916 ORTHO05D004655 3.7e-28 127.9 83 71.1
PSO591G0016 Papaver somniferum HOM05D003916 ORTHO05D004655 3.7e-28 127.9 75 76.0
Glyma.09G228500 Glycine max HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 77.3
Glyma.12G008000 Glycine max HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 77.3
Gohir.A05G320501 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 76.0
Gohir.D05G317100 Gossypium hirsutum HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 76.0
Gorai.009G339400 Gossypium raimondii HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 76.0
RcHm_v2.0_Chr6g0262241 Rosa chinensis HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 77.3
VMungo1127G0323 Vigna mungo HOM05D003916 ORTHO05D004655 4.8e-28 127.5 75 77.3
CANSAT35G0488 Cannabis sativa HOM05D003916 ORTHO05D004655 6.3e-28 127.1 75 76.0
Manes.10G140600 Manihot esculenta HOM05D003916 ORTHO05D004655 6.3e-28 127.1 75 78.7
Phvul.011G010100 Phaseolus vulgaris HOM05D003916 ORTHO05D004655 6.3e-28 127.1 75 76.0
Sc23g0005950 Simmondsia chinensis HOM05D003916 ORTHO05D004655 6.3e-28 127.1 75 77.3
ATR0751G171 Amborella trichopoda HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 74.7
BcaB01g00447 Brassica carinata HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BcaB02g08590 Brassica carinata HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BcaC02g09283 Brassica carinata HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BcaNung06090 Brassica carinata HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
A04p07280 Brassica napus HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
A09p45160 Brassica napus HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
C04p40890 Brassica napus HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
C08p27350 Brassica napus HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BolC4t25674H Brassica oleracea HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BraA04t16424Z Brassica rapa HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
BraA09t39977Z Brassica rapa HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 76.0
Ca_04149_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 77.3
Ca_22196_v3 Cicer arietinum L. HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 77.3
Nn7g36243 Nelumbo nucifera HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 77.3
PSO832G0252 Papaver somniferum HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 74.7
TAR633G2550 Trochodendron aralioides HOM05D003916 ORTHO05D004655 8.2e-28 126.7 75 74.7
AUR62018571 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.1e-27 126.3 75 76.0
AUR62020845 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.1e-27 126.3 75 76.0
HPP92_009912 Vanilla planifolia HOM05D003916 ORTHO05D004655 1.1e-27 126.3 75 76.0
Zm00001eb247270 Zea mays HOM05D003916 ORTHO05D004655 1.1e-27 126.3 75 76.0
AL5G32640 Arabidopsis lyrata HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 76.0
AT3G52090 Arabidopsis thaliana HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 77.3
arahy.Tifrunner.gnm1.ann1.KPCT5J Arachis hypogaea HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 77.3
arahy.Tifrunner.gnm1.ann1.U5V8MN Arachis hypogaea HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 77.3
Carub.0005s1841 Capsella rubella HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 76.0
Gohir.A08G054500 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 76.0
Gohir.D08G064200 Gossypium hirsutum HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 76.0
PSO063G3578 Papaver somniferum HOM05D003916 ORTHO05D004655 1.4e-27 125.9 74 75.7
PSO782G0643 Papaver somniferum HOM05D003916 ORTHO05D004655 1.4e-27 125.9 74 75.7
Sp5g10210 Schrenkiella parvula HOM05D003916 ORTHO05D004655 1.4e-27 125.9 75 76.0
BolC8t50352H Brassica oleracea HOM05D003916 ORTHO05D004655 1.8e-27 125.6 74 77.0
CARHR161800 Cardamine hirsuta HOM05D003916 ORTHO05D004655 1.8e-27 125.6 75 74.7
ECA248G0794 Erigeron canadensis HOM05D003916 ORTHO05D004655 1.8e-27 125.6 75 78.7
Peaxi162Scf00619g00024 Petunia axillaris HOM05D003916 ORTHO05D004655 1.8e-27 125.6 75 74.7
Gorai.004G066500 Gossypium raimondii HOM05D003916 ORTHO05D004655 2.4e-27 125.2 75 76.0
Hund20252 Selenicereus undatus HOM05D003916 ORTHO05D004655 2.4e-27 125.2 75 74.7
Aa31LG10G7160 Aethionema arabicum HOM05D003916 ORTHO05D004655 3.1e-27 124.8 74 77.0
Thhalv10010833m.g Eutrema salsugineum HOM05D003916 ORTHO05D004655 3.1e-27 124.8 75 74.7
Peaxi162Scf00948g00222 Petunia axillaris HOM05D003916 ORTHO05D004655 3.1e-27 124.8 75 74.7
unitig_0.g2398 Utricularia gibba HOM05D003916 ORTHO05D004655 3.1e-27 124.8 75 76.0
Migut.D01881 Erythranthe guttata HOM05D003916 ORTHO05D004655 4.1e-27 124.4 75 74.7
Migut.O00412 Erythranthe guttata HOM05D003916 ORTHO05D004655 4.1e-27 124.4 75 74.7
MSTRG.9650 Avicennia marina HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 73.3
EL10Ac3g07468 Beta vulgaris HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 74.7
Oeu061209.2 Olea europaea HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 74.7
Solyc11g069910.2 Solanum lycopersicum HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 73.3
Sopen11g028370 Solanum pennellii HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 73.3
PGSC0003DMG400008095 Solanum tuberosum HOM05D003916 ORTHO05D004655 5.3e-27 124.0 75 73.3
CiPaw.15G004900 Carya illinoinensis HOM05D003916 ORTHO05D004655 7.0e-27 123.6 83 74.7
Oeu048996.1 Olea europaea HOM05D003916 ORTHO05D004655 7.0e-27 123.6 75 74.7
SalBow8G4163 Salvia bowleyana HOM05D003916 ORTHO05D004655 7.0e-27 123.6 75 73.3
SGA_v2.0_scaffold114G31877 Striga asiatica HOM05D003916 ORTHO05D004655 7.0e-27 123.6 75 73.3
Nitab4.5_0005283g0050 Nicotiana tabacum HOM05D003916 ORTHO05D004655 9.1e-27 123.2 75 73.3
SGA_v2.0_scaffold7G04094 Striga asiatica HOM05D003916 ORTHO05D004655 9.1e-27 123.2 75 74.7
Nitab4.5_0000130g0090 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.2e-26 122.9 75 72.0
Nitab4.5_0010117g0010 Nicotiana tabacum HOM05D003916 ORTHO05D004655 1.2e-26 122.9 75 72.0
AUR62043813 Chenopodium quinoa HOM05D003916 ORTHO05D004655 1.6e-26 122.5 82 70.7
Zm00001eb247220 Zea mays HOM05D003916 ORTHO05D004655 2.0e-26 122.1 75 73.3
CAN.G631.46 Capsicum annuum HOM05D003916 ORTHO05D004655 2.6e-26 121.7 75 72.0
CDE10G1144 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 2.6e-26 121.7 75 69.3
Haze_25581 Corylus avellana HOM05D003916 ORTHO05D004655 3.5e-26 121.3 75 76.0
SMO145G0130 Selaginella moellendorffii HOM05D003916 ORTHO05D004655 1.0e-25 119.8 75 68.0
Sc10g0000140 Simmondsia chinensis HOM05D003916 ORTHO05D004655 2.2e-25 118.6 75 72.0
Dinv09344 Davidia involucrata HOM05D003916 ORTHO05D004655 2.9e-25 118.2 77 74.0
SEGI_28477 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.8e-25 117.9 75 64.0
AagrBONN_evm.TU.Sc2ySwM_368.1572 Anthoceros agrestis HOM05D003916 ORTHO05D004655 5.0e-25 117.5 75 66.7
Sed0017618 Sechium edule HOM05D003916 ORTHO05D004655 5.0e-25 117.5 75 66.7
MELO3C023562.2 Cucumis melo HOM05D003916 ORTHO05D004655 6.5e-25 117.1 75 68.0
CsaV3_7G030940 Cucumis sativus L. HOM05D003916 ORTHO05D004655 6.5e-25 117.1 75 68.0
Lsat_1_v5_gn_1_106300 Lactuca sativa HOM05D003916 ORTHO05D004655 1.5e-24 115.9 75 74.7
Zm00001eb247250 Zea mays HOM05D003916 ORTHO05D004655 2.5e-24 115.2 67 79.1
Sabra09G0053700 Salix brachista HOM05D003916 ORTHO05D004655 3.2e-24 114.8 82 68.3
SEGI_19516 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 3.2e-24 114.8 75 65.3
Duzib133G0053 Durio zibethinus HOM05D003916 ORTHO05D004655 4.2e-24 114.4 75 72.0
Mapoly0064s0055 Marchantia polymorpha HOM05D003916 ORTHO05D004655 4.2e-24 114.4 75 62.7
Pp3c2_2740 Physcomitrium patens HOM05D003916 ORTHO05D004655 4.2e-24 114.4 75 62.7
Zm00001eb247300 Zea mays HOM05D003916 ORTHO05D004655 4.2e-24 114.4 76 72.4
Cc03_g12460 Coffea canephora HOM05D003916 ORTHO05D004655 5.5e-24 114.0 95 61.1
Pp3c14_14340 Physcomitrium patens HOM05D003916 ORTHO05D004655 5.5e-24 114.0 78 61.5
SEGI_39087 Sequoiadendron giganteum HOM05D003916 ORTHO05D004655 5.5e-24 114.0 75 65.3
Cpa.g.sc125.23 Carica papaya HOM05D003916 ORTHO05D004655 9.4e-24 113.2 101 57.4
ClCG09G004040 Citrullus lanatus HOM05D003916 ORTHO05D004655 2.4e-19 98.6 113 45.1
Zm00001eb247280 Zea mays HOM05D003916 ORTHO05D004655 3.1e-19 98.2 63 71.4
PRCOL_00004893 Prasinoderma coloniale HOM05D003916 ORTHO05D004655 1.7e-17 92.4 83 47.0
MCO15G160 Micromonas commoda HOM05D003916 ORTHO05D004655 5.0e-17 90.9 75 46.7
CDE10G1147 Ceratophyllum demersum HOM05D003916 ORTHO05D004655 3.2e-16 88.2 75 58.7
Cre13.g565550 Chlamydomonas reinhardtii HOM05D003916 ORTHO05D004655 7.2e-16 87.0 75 49.3
Zm00001eb247230 Zea mays HOM05D003916 ORTHO05D004655 2.1e-15 85.5 57 70.2
Zm00001eb247290 Zea mays HOM05D003916 ORTHO05D004655 6.1e-15 84.0 57 68.4
Haze_26797 Corylus avellana HOM05D003916 ORTHO05D004655 1.4e-14 82.8 75 48.0
Haze_27709 Corylus avellana HOM05D003916 ORTHO05D004655 1.4e-14 82.8 75 48.0
Nitab4.5_0002959g0030 Nicotiana tabacum HOM05D003916 ORTHO05D004655 3.4e-13 78.2 53 66.0
AagrBONN_evm.TU.Sc2ySwM_368.1582 Anthoceros agrestis HOM05D003916 ORTHO05D004655 4.4e-13 77.8 50 62.0
CiPaw.03G260400 Carya illinoinensis HOM05D003916 ORTHO05D004655 2.2e-12 75.5 60 60.0
AUR62028413 Chenopodium quinoa HOM05D003916 ORTHO05D004655 8.5e-09 63.5 82 43.9
Sc11g0009080 Simmondsia chinensis HOM05D003916 ORTHO05D004655 8.5e-09 63.5 75 46.7
AUR62029883 Chenopodium quinoa HOM05D003916 ORTHO05D004655 2.5e-08 62.0 82 43.9
Cfa026890 Carpinus fangiana HOM05D003916 ORTHO05D004655 4.0e-06 54.7 66 34.8


User provided reference genes

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