Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G137100 Carya illinoinensis HOM05D004774 ORTHO05D005514 1.5e-115 419.5 202 100.0
QL08p045287 Quercus lobata HOM05D004774 ORTHO05D005514 3.2e-102 375.2 201 87.1
Cfa005024 Carpinus fangiana HOM05D004774 ORTHO05D005514 9.7e-91 337.0 196 80.1
Cpa.g.sc52.135 Carica papaya HOM05D004774 ORTHO05D005514 6.5e-87 324.3 202 73.3
Dinv40162 Davidia involucrata HOM05D004774 ORTHO05D005514 3.4e-83 312.0 193 73.6
CANSAT35G0005 Cannabis sativa HOM05D004774 ORTHO05D005514 5.7e-83 311.2 199 71.9
Thecc.01G266900 Theobroma cacao HOM05D004774 ORTHO05D005514 1.7e-82 309.7 208 71.2
GSVIVG01000730001 Vitis vinifera HOM05D004774 ORTHO05D005514 3.7e-82 308.5 192 72.4
TWI12G1255 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 1.2e-80 303.5 200 70.5
GSVIVG01011075001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.6e-80 303.1 192 69.8
Dinv22475 Davidia involucrata HOM05D004774 ORTHO05D005514 2.0e-80 302.8 193 71.5
Gohir.A07G209300 Gossypium hirsutum HOM05D004774 ORTHO05D005514 3.5e-80 302.0 208 69.7
Nn4g23666 Nelumbo nucifera HOM05D004774 ORTHO05D005514 3.5e-80 302.0 193 72.5
Duzib138G0586 Durio zibethinus HOM05D004774 ORTHO05D005514 4.5e-80 301.6 211 70.1
Gorai.001G243200 Gossypium raimondii HOM05D004774 ORTHO05D005514 5.9e-80 301.2 208 69.2
TAR636G0805 Trochodendron aralioides HOM05D004774 ORTHO05D005514 7.7e-80 300.8 187 74.3
Prupe.2G103200 Prunus persica HOM05D004774 ORTHO05D005514 1.0e-79 300.4 202 70.3
TWI18G0081 Tripterygium wilfordii HOM05D004774 ORTHO05D005514 2.9e-79 298.9 200 68.0
Gohir.D07G215400 Gossypium hirsutum HOM05D004774 ORTHO05D005514 6.6e-79 297.7 208 68.3
Atru.chr5.1584 Acer truncatum HOM05D004774 ORTHO05D005514 3.6e-77 292.0 192 71.4
THA.LOC104815831 Tarenaya hassleriana HOM05D004774 ORTHO05D005514 4.7e-77 291.6 192 68.2
Manes.01G201400 Manihot esculenta HOM05D004774 ORTHO05D005514 6.1e-77 291.2 203 67.5
CAN.G1190.29 Capsicum annuum HOM05D004774 ORTHO05D005514 2.3e-76 289.3 193 67.9
Sopen07g002340 Solanum pennellii HOM05D004774 ORTHO05D005514 2.3e-76 289.3 193 67.9
Lalb_Chr17g0348441 Lupinus albus HOM05D004774 ORTHO05D005514 5.2e-76 288.1 200 68.0
Cc01_g18810 Coffea canephora HOM05D004774 ORTHO05D005514 6.8e-76 287.7 193 67.4
Nitab4.5_0003289g0060 Nicotiana tabacum HOM05D004774 ORTHO05D005514 2.0e-75 286.2 194 67.0
Ca_26554_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 4.4e-75 285.0 196 69.4
ClCG09G004860 Citrullus lanatus HOM05D004774 ORTHO05D005514 4.4e-75 285.0 216 61.1
Duzib211G0067 Durio zibethinus HOM05D004774 ORTHO05D005514 4.4e-75 285.0 207 66.2
MD08G1227600 Malus domestica HOM05D004774 ORTHO05D005514 1.3e-74 283.5 201 66.7
Aa31LG1G7840 Aethionema arabicum HOM05D004480 ORTHO05D005546 2.2e-74 282.7 202 62.9
Lj4g0014477 Lotus japonicus HOM05D004774 ORTHO05D005514 2.8e-74 282.3 201 66.2
Solyc07g006240.4 Solanum lycopersicum HOM05D004774 ORTHO05D005514 2.8e-74 282.3 199 65.8
CSS0049587 Camellia sinensis var. sinensis HOM05D004774 ORTHO05D005514 4.9e-74 281.6 236 57.2
AL1G16800 Arabidopsis lyrata HOM05D004774 ORTHO05D005514 8.3e-74 280.8 202 61.4
Duzib211G0109 Durio zibethinus HOM05D004774 ORTHO05D005514 8.3e-74 280.8 207 65.7
MSTRG.18290 Avicennia marina HOM05D004774 ORTHO05D005514 2.4e-73 279.3 203 64.0
CsaV3_7G030220 Cucumis sativus L. HOM05D004774 ORTHO05D005514 2.7e-72 275.8 211 61.1
Carub.0001s0611 Capsella rubella HOM05D004774 ORTHO05D005514 3.5e-72 275.4 192 63.0
COL.COLO4_05101 Corchorus olitorius HOM05D004774 ORTHO05D005514 3.5e-72 275.4 211 61.1
Thhalv10028967m.g Eutrema salsugineum HOM05D004774 ORTHO05D005514 3.5e-72 275.4 202 61.9
Hma1.2p1_1029F.1_g249620 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.8e-72 274.2 227 57.7
Hma1.2p1_1029F.1_g249641 Hydrangea macrophylla HOM05D004774 ORTHO05D005514 7.8e-72 274.2 227 57.7
Aqoxy1G01668 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.0e-71 273.9 193 65.3
Aqoxy7G03988 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.3e-71 273.5 193 65.3
Aqoxy4G03157 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 1.7e-71 273.1 193 65.3
Migut.D00377 Erythranthe guttata HOM05D004774 ORTHO05D005514 1.7e-71 273.1 199 61.3
Psat3g097920 Pisum sativum HOM05D004774 ORTHO05D005514 2.9e-71 272.3 195 67.2
PSO170G5180 Papaver somniferum HOM05D004774 ORTHO05D005514 3.9e-71 271.9 193 65.3
VMungo0331G0358 Vigna mungo HOM05D002747 ORTHO05D005514 5.0e-71 271.6 209 61.7
Glyma.19G215300 Glycine max HOM05D004774 ORTHO05D005514 6.6e-71 271.2 214 62.6
PSO017G6900 Papaver somniferum HOM05D004774 ORTHO05D005514 8.6e-71 270.8 193 66.3
BraA08t35495Z Brassica rapa HOM05D004774 ORTHO05D005514 1.1e-70 270.4 193 61.7
Sp1g05530 Schrenkiella parvula HOM05D004774 ORTHO05D005514 1.5e-70 270.0 202 60.4
Phvul.010G020150 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.5e-70 269.2 209 60.8
Phvul.010G020200 Phaseolus vulgaris HOM05D004774 ORTHO05D005514 2.5e-70 269.2 209 60.8
CARHR006490 Cardamine hirsuta HOM05D004774 ORTHO05D005514 3.3e-70 268.9 202 60.9
Lsat_1_v5_gn_5_176641 Lactuca sativa HOM05D004774 ORTHO05D005514 3.3e-70 268.9 194 65.5
Glyma.03G218500 Glycine max HOM05D004774 ORTHO05D005514 4.3e-70 268.5 214 60.3
vmacro02628 Vaccinium macrocarpon HOM05D004774 ORTHO05D005514 4.3e-70 268.5 233 57.1
A08p35880 Brassica napus HOM05D004774 ORTHO05D005514 5.6e-70 268.1 193 62.2
C08p02690 Brassica napus HOM05D004774 ORTHO05D005514 5.6e-70 268.1 193 62.2
BolC8t47065H Brassica oleracea HOM05D004774 ORTHO05D005514 5.6e-70 268.1 193 62.2
Potri.002G044500 Populus trichocarpa HOM05D004774 ORTHO05D005514 7.3e-70 267.7 192 64.6
MELO3C023634.2 Cucumis melo HOM05D004774 ORTHO05D005514 1.2e-69 266.9 219 58.9
Ciclev10023915m.g Citrus clementina HOM05D004774 ORTHO05D005514 2.8e-69 265.8 177 70.6
EL10Ac3g05825 Beta vulgaris HOM05D004774 ORTHO05D005514 3.6e-69 265.4 193 61.7
Sed0022653 Sechium edule HOM05D004774 ORTHO05D005514 3.6e-69 265.4 213 57.7
Nitab4.5_0001427g0080 Nicotiana tabacum HOM05D004774 ORTHO05D005514 1.2e-67 260.4 178 66.9
AUR62002186 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.7e-66 256.5 193 61.1
Rhsim13G0031100 Rhododendron simsii HOM05D004774 ORTHO05D005514 1.7e-66 256.5 238 55.9
BolC8t52628H Brassica oleracea HOM05D004774 ORTHO05D005514 2.9e-66 255.8 197 58.4
A09p66780 Brassica napus HOM05D004774 ORTHO05D005514 1.1e-65 253.8 198 58.1
RcHm_v2.0_Chr5g0063451 Rosa chinensis HOM05D004774 ORTHO05D005514 1.4e-65 253.4 197 61.4
SGA_v2.0_scaffold138G35272 Striga asiatica HOM05D004774 ORTHO05D005514 1.9e-65 253.1 222 56.3
C08p51000 Brassica napus HOM05D004774 ORTHO05D005514 2.4e-65 252.7 203 56.7
DCAR_002682 Daucus carota HOM05D004774 ORTHO05D005514 4.1e-65 251.9 167 70.1
PGSC0003DMG400011166 Solanum tuberosum HOM05D004774 ORTHO05D005514 9.2e-65 250.8 184 64.7
AT1G06790 Arabidopsis thaliana HOM05D004774 ORTHO05D005514 2.0e-64 249.6 182 62.1
Medtr8g072680 Medicago truncatula HOM05D004774 ORTHO05D005514 1.3e-63 246.9 194 61.9
MBI04_g06856_MAGBIO Magnolia biondii HOM05D004774 ORTHO05D005514 3.0e-63 245.7 194 62.4
ECA247G2354 Erigeron canadensis HOM05D002220 ORTHO05D008182 5.0e-63 245.0 197 62.4
VMungo1309G2525 Vigna mungo HOM05D004774 ORTHO05D005514 1.1e-62 243.8 191 61.8
BraA09t42016Z Brassica rapa HOM05D004774 ORTHO05D005514 1.9e-62 243.0 227 50.7
Eucgr.B01492 Eucalyptus grandis HOM05D004774 ORTHO05D005514 4.3e-62 241.9 192 65.1
FvH4_1g22880 Fragaria vesca HOM05D004774 ORTHO05D005514 5.6e-62 241.5 197 59.9
Sabra02G0035700 Salix brachista HOM05D004774 ORTHO05D005514 4.7e-61 238.4 178 63.5
FAN19G2773 Fragaria x ananassa HOM05D004774 ORTHO05D005514 8.0e-61 237.7 197 59.4
BcaC07g42048 Brassica carinata HOM05D004774 ORTHO05D005514 8.9e-60 234.2 197 54.8
Peaxi162Scf00934g00135 Petunia axillaris HOM05D004774 ORTHO05D005514 8.9e-60 234.2 193 58.5
Sc04g0000740 Simmondsia chinensis HOM05D004774 ORTHO05D005514 4.4e-59 231.9 193 56.5
AUR62015525 Chenopodium quinoa HOM05D004774 ORTHO05D005514 1.7e-58 229.9 178 61.8
SEGI_34955 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 2.9e-58 229.2 202 52.0
SMO012G0037 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 1.4e-57 226.9 192 55.2
FAN23G2064 Fragaria x ananassa HOM05D004774 ORTHO05D005514 4.1e-57 225.3 215 54.0
Mapoly0050s0102 Marchantia polymorpha HOM05D004774 ORTHO05D005514 1.0e-55 220.7 192 50.5
Pp3c7_17850 Physcomitrium patens HOM05D004774 ORTHO05D005514 1.0e-55 220.7 193 52.8
HPP92_027004 Vanilla planifolia HOM05D004774 ORTHO05D005514 3.9e-55 218.8 192 51.6
Ca_27275_v3 Cicer arietinum L. HOM05D004774 ORTHO05D005514 5.1e-55 218.4 156 69.2
HPP92_015388 Vanilla planifolia HOM05D004774 ORTHO05D005514 6.6e-55 218.0 192 51.0
FAN26G2874 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.5e-54 216.9 177 61.6
unitig_0.g1128 Utricularia gibba HOM05D004774 ORTHO05D005514 1.2e-53 213.8 260 42.7
Os07g0477000 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 8.1e-53 211.1 201 52.7
SGA_v2.0_scaffold43G16236 Striga asiatica HOM05D004774 ORTHO05D005514 1.8e-52 209.9 164 60.4
AagrBONN_evm.TU.Sc2ySwM_344.4376 Anthoceros agrestis HOM05D004774 ORTHO05D005514 6.8e-52 208.0 192 49.0
PSO339G5528 Papaver somniferum HOM05D004774 ORTHO05D005514 5.4e-49 198.4 151 62.3
Lj4A469T41 Lonicera japonica HOM05D004774 ORTHO05D005514 7.1e-49 198.0 135 71.1
Nn1g02575 Nelumbo nucifera HOM05D004774 ORTHO05D005514 2.1e-48 196.4 121 71.1
Cre12.g538400 Chlamydomonas reinhardtii HOM05D004774 ORTHO05D005514 1.0e-47 194.1 206 49.0
SMO298G0040 Selaginella moellendorffii HOM05D004774 ORTHO05D005514 8.4e-42 174.5 193 47.2
SHI09938 Sapria himalayana HOM05D004774 ORTHO05D000023 7.1e-41 171.4 132 63.6
BcaC07g42538 Brassica carinata HOM05D004774 ORTHO05D005514 4.6e-40 168.7 127 60.6
CDE07G1842 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 1.0e-39 167.5 192 46.4
MCO09G483 Micromonas commoda HOM05D004774 ORTHO05D005514 3.0e-39 166.0 204 40.2
CDE07G0321 Ceratophyllum demersum HOM05D004774 ORTHO05D005514 2.8e-37 159.5 199 43.2
PGR119G0353 Punica granatum HOM05D004774 ORTHO05D005514 2.0e-35 153.3 129 55.0
HanXRQChr14g0454071 Helianthus annuus HOM05D004774 ORTHO05D005514 3.8e-34 149.1 120 55.8
Aqoxy7G03987 Aquilegia oxysepala HOM05D004774 ORTHO05D005514 3.2e-33 146.0 98 68.4
TPR.G27929 Trifolium pratense HOM05D004774 ORTHO05D005514 3.2e-33 146.0 104 68.3
arahy.Tifrunner.gnm1.ann1.SKV00U Arachis hypogaea HOM05D004774 ORTHO05D005514 1.0e-31 141.0 99 57.6
FAN21G2916 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.7e-31 140.2 101 69.3
Zm00001eb319960 Zea mays HOM05D004774 ORTHO05D005514 1.7e-31 140.2 114 59.6
arahy.Tifrunner.gnm1.ann1.KW6T12 Arachis hypogaea HOM05D004774 ORTHO05D005514 3.0e-31 139.4 96 70.8
FAN11G3419 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.9e-30 136.7 140 53.6
ATR0665G644 Amborella trichopoda HOM05D004774 ORTHO05D005514 1.1e-28 131.0 98 59.2
Haze_02361 Corylus avellana HOM05D004774 ORTHO05D005514 2.6e-27 126.3 74 68.9
Haze_02362 Corylus avellana HOM05D004774 ORTHO05D005514 2.6e-27 126.3 70 87.1
GSVIVG01021945001 Vitis vinifera HOM05D004774 ORTHO05D005514 5.8e-27 125.2 98 63.3
Prupe.7G016800 Prunus persica HOM05D004774 ORTHO05D005514 9.3e-25 117.9 105 54.3
SEGI_28935 Sequoiadendron giganteum HOM05D004774 ORTHO05D005514 1.8e-23 113.6 102 49.0
TPR.G27925 Trifolium pratense HOM05D004774 ORTHO05D005514 3.3e-22 109.4 79 55.7
GSVIVG01021951001 Vitis vinifera HOM05D004774 ORTHO05D005514 9.6e-22 107.8 101 55.4
TPR.G27610 Trifolium pratense HOM05D004774 ORTHO05D005514 4.8e-21 105.5 68 72.1
GSVIVG01000731001 Vitis vinifera HOM05D004774 ORTHO05D005514 8.1e-21 104.8 75 69.3
FvH4_3g35340 Fragaria vesca HOM05D004774 ORTHO05D005514 2.9e-18 96.3 102 51.0
GSVIVG01004486001 Vitis vinifera HOM05D004774 ORTHO05D005514 6.5e-18 95.1 70 60.0
GSVIVG01000732001 Vitis vinifera HOM05D004774 ORTHO05D005514 2.1e-16 90.1 68 54.4
TPR.G26057 Trifolium pratense HOM05D004774 ORTHO05D005514 6.0e-16 88.6 63 65.1
CBR_g31683 Chara braunii HOM05D004774 ORTHO05D005514 4.8e-13 79.0 117 40.2
Ah.11g042480 Amaranthus hybridus HOM05D004774 ORTHO05D005514 1.1e-12 77.8 69 50.7
Lalb_Chr23g0275811 Lupinus albus HOM05D004774 ORTHO05D005514 1.1e-12 77.8 107 46.7
GSVIVG01000736001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.8e-12 77.0 47 63.8
BolC8t46832H Brassica oleracea HOM05D004774 ORTHO05D005514 1.5e-11 73.9 46 67.4
A03p16490 Brassica napus HOM05D037327 ORTHO05D005514 4.2e-09 65.9 41 58.5
Lj4A469T40 Lonicera japonica HOM05D004774 ORTHO05D005514 4.2e-09 65.9 43 65.1
BolC1t02432H Brassica oleracea HOM05D004774 ORTHO05D033846 1.6e-08 63.9 41 65.9
C08p41270 Brassica napus HOM05D004774 ORTHO05D005514 2.1e-08 63.5 41 65.9
MD02G1234500 Malus domestica HOM05D004774 ORTHO05D005514 4.6e-08 62.4 40 62.5
FAN28G1675 Fragaria x ananassa HOM05D004774 ORTHO05D005514 1.0e-07 61.2 61 52.5
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.3e-07 60.8 80 36.2
GSVIVG01018600001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.3e-07 60.8 56 46.4
GSVIVG01034583001 Vitis vinifera HOM05D004774 ORTHO05D005514 1.5e-06 57.4 52 50.0
Os03g0609200 Oryza sativa ssp. japonica HOM05D004774 ORTHO05D005514 1.9e-06 57.0 45 55.6
C02p58710 Brassica napus HOM05D041306 ORTHO05D005514 3.3e-06 56.2 43 53.5
C01p24870 Brassica napus HOM05D041306 ORTHO05D005514 4.3e-06 55.8 43 53.5
GSVIVG01001488001 Vitis vinifera HOM05D005363 ORTHO05D006607 9.7e-06 54.7 48 58.3


User provided reference genes

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