Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G125300 Carya illinoinensis HOM05D005339 ORTHO05D006561 2.4e-171 605.5 336 100.0
Cfa005184 Carpinus fangiana HOM05D005339 ORTHO05D006561 2.0e-157 559.3 337 92.6
CiPaw.05G077200 Carya illinoinensis HOM05D005339 ORTHO05D006561 9.3e-155 550.4 337 91.7
QL11p047539 Quercus lobata HOM05D005339 ORTHO05D006561 1.8e-153 546.2 336 90.8
QL11p047573 Quercus lobata HOM05D005339 ORTHO05D006561 1.8e-153 546.2 336 90.8
Gohir.A03G203200 Gossypium hirsutum HOM05D005339 ORTHO05D006561 7.4e-152 540.8 337 89.0
Gorai.005G252300 Gossypium raimondii HOM05D005339 ORTHO05D006561 7.4e-152 540.8 337 89.0
Potri.004G168400 Populus trichocarpa HOM05D005339 ORTHO05D006561 6.3e-151 537.7 337 89.3
Gohir.D02G224500 Gossypium hirsutum HOM05D005339 ORTHO05D006561 1.1e-150 537.0 337 88.4
Thecc.02G066900 Theobroma cacao HOM05D005339 ORTHO05D006561 1.1e-150 537.0 338 89.1
Actinidia20485 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-149 533.5 337 86.9
Ciclev10028803m.g Citrus clementina HOM05D005339 ORTHO05D006561 2.0e-149 532.7 337 84.9
Rhsim11G0187800 Rhododendron simsii HOM05D005339 ORTHO05D006561 3.4e-149 531.9 337 86.9
Duzib132G0613 Durio zibethinus HOM05D005339 ORTHO05D006561 1.7e-148 529.6 349 86.0
Sabra04G0112800 Salix brachista HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 87.5
GSVIVG01024083001 Vitis vinifera HOM05D005339 ORTHO05D006561 1.7e-148 529.6 337 88.4
THA.LOC104807785 Tarenaya hassleriana HOM05D005339 ORTHO05D006561 2.2e-148 529.3 337 87.5
Manes.04G078200 Manihot esculenta HOM05D005339 ORTHO05D006561 8.5e-148 527.3 337 88.1
ClCG02G011380 Citrullus lanatus HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 87.5
CsaV3_2G015710 Cucumis sativus L. HOM05D005339 ORTHO05D006561 2.5e-147 525.8 337 87.5
Lalb_Chr11g0072011 Lupinus albus HOM05D005339 ORTHO05D006561 4.2e-147 525.0 337 86.6
RcHm_v2.0_Chr2g0122771 Rosa chinensis HOM05D005339 ORTHO05D006561 4.2e-147 525.0 337 86.1
Potri.009G129700 Populus trichocarpa HOM05D005339 ORTHO05D006561 5.5e-147 524.6 337 86.9
Eucgr.I01375 Eucalyptus grandis HOM05D005339 ORTHO05D006561 9.4e-147 523.9 338 86.4
CSS0049457 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.6e-146 523.1 338 86.4
PGR142G1539 Punica granatum HOM05D005339 ORTHO05D006561 1.6e-146 523.1 337 86.9
Prupe.7G010600 Prunus persica HOM05D005339 ORTHO05D006561 3.6e-146 521.9 337 85.5
CANSAT25G3263 Cannabis sativa HOM05D005339 ORTHO05D006561 6.1e-146 521.2 337 86.9
Aqoxy5G01796 Aquilegia oxysepala HOM05D005339 ORTHO05D006561 7.9e-146 520.8 337 86.1
arahy.Tifrunner.gnm1.ann1.RMHT0B Arachis hypogaea HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 86.9
Hma1.2p1_0032F.1_g019680 Hydrangea macrophylla HOM05D005339 ORTHO05D006561 3.0e-145 518.8 337 85.5
vmacro02249 Vaccinium macrocarpon HOM05D005339 ORTHO05D006561 1.1e-144 516.9 337 86.1
ATR0810G182 Amborella trichopoda HOM05D005339 ORTHO05D006561 2.0e-144 516.2 337 85.5
Sed0019675 Sechium edule HOM05D005339 ORTHO05D006561 3.3e-144 515.4 337 84.9
Glyma.05G234700 Glycine max HOM05D005339 ORTHO05D006561 7.4e-144 514.2 337 84.9
PGSC0003DMG400001633 Solanum tuberosum HOM05D005339 ORTHO05D006561 9.7e-144 513.8 337 84.9
Glyma.08G042200 Glycine max HOM05D005339 ORTHO05D006561 1.7e-143 513.1 339 85.5
AL4G10240 Arabidopsis lyrata HOM05D005339 ORTHO05D006561 2.2e-143 512.7 338 83.4
Hund06405 Selenicereus undatus HOM05D005339 ORTHO05D006561 2.8e-143 512.3 337 84.0
AT2G21150 Arabidopsis thaliana HOM05D005339 ORTHO05D006561 3.7e-143 511.9 338 83.7
Thhalv10000232m.g Eutrema salsugineum HOM05D005339 ORTHO05D006561 6.3e-143 511.1 338 84.9
CDE04G0258 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 3.1e-142 508.8 337 84.9
arahy.Tifrunner.gnm1.ann1.UV505Z Arachis hypogaea HOM05D005339 ORTHO05D006561 4.1e-142 508.4 353 83.0
Carub.0004s0017 Capsella rubella HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 82.5
Cc11_g02780 Coffea canephora HOM05D005339 ORTHO05D006561 4.1e-142 508.4 338 84.6
Sp4g00300 Schrenkiella parvula HOM05D005339 ORTHO05D006561 6.9e-142 507.7 338 84.3
Atru.chr5.3227 Acer truncatum HOM05D005339 ORTHO05D006561 7.7e-141 504.2 337 86.1
MD14G1006100 Malus domestica HOM05D005339 ORTHO05D006561 7.7e-141 504.2 337 83.1
MD12G1008800 Malus domestica HOM05D005339 ORTHO05D006561 1.0e-140 503.8 337 83.1
BcaB08g34965 Brassica carinata HOM05D005339 ORTHO05D006561 2.9e-140 502.3 338 83.7
Psat7g008680 Pisum sativum HOM05D005339 ORTHO05D006561 2.9e-140 502.3 341 83.6
CAN.G588.26 Capsicum annuum HOM05D005339 ORTHO05D006561 6.5e-140 501.1 337 83.4
Medtr8g105120 Medicago truncatula HOM05D005339 ORTHO05D006561 1.1e-139 500.4 340 83.2
Sabra09G0099200 Salix brachista HOM05D005339 ORTHO05D006561 1.4e-139 500.0 372 78.2
DCAR_022955 Daucus carota HOM05D005339 ORTHO05D006561 1.9e-139 499.6 355 80.0
DCAR_022956 Daucus carota HOM05D005339 ORTHO05D006561 1.9e-139 499.6 355 80.0
Nn7g36850 Nelumbo nucifera HOM05D005339 ORTHO05D006561 2.5e-139 499.2 321 86.6
MBI19_g09243_MAGBIO Magnolia biondii HOM05D005339 ORTHO05D006561 4.2e-139 498.4 365 79.7
CDE02G2588 Ceratophyllum demersum HOM05D005339 ORTHO05D006561 5.5e-139 498.0 337 77.7
PSO700G0269 Papaver somniferum HOM05D005339 ORTHO05D006561 7.2e-139 497.7 339 83.8
Migut.B00167 Erythranthe guttata HOM05D005339 ORTHO05D006561 1.2e-138 496.9 339 83.2
Phvul.002G320300 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 1.2e-138 496.9 340 83.5
Solyc01g111140.3 Solanum lycopersicum HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 83.1
Sopen01g053200 Solanum pennellii HOM05D005339 ORTHO05D006561 2.7e-138 495.7 337 83.1
HanXRQChr15g0478851 Helianthus annuus HOM05D005339 ORTHO05D006561 4.7e-138 495.0 337 84.3
Nitab4.5_0000283g0140 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.1e-138 494.6 337 82.8
Nitab4.5_0000980g0240 Nicotiana tabacum HOM05D005339 ORTHO05D006561 6.1e-138 494.6 337 82.8
PSO170G1371 Papaver somniferum HOM05D005339 ORTHO05D006561 7.9e-138 494.2 339 83.5
TWI31G0803 Tripterygium wilfordii HOM05D005339 ORTHO05D006561 7.9e-138 494.2 337 84.0
Zm00001eb103630 Zea mays HOM05D005339 ORTHO05D006561 7.9e-138 494.2 337 83.1
Peaxi162Scf00362g01036 Petunia axillaris HOM05D005339 ORTHO05D006561 1.0e-137 493.8 337 82.2
VMungo0251G0038 Vigna mungo HOM05D005339 ORTHO05D006561 6.7e-137 491.1 340 82.9
Os09g0535300 Oryza sativa ssp. japonica HOM05D005339 ORTHO05D006561 1.1e-136 490.3 337 82.5
Aa31LG7G15530 Aethionema arabicum HOM05D005339 ORTHO05D006561 5.7e-136 488.0 330 84.2
C04p50370 Brassica napus HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 82.0
BolC4t26635H Brassica oleracea HOM05D005339 ORTHO05D006561 9.7e-136 487.3 338 82.0
Haze_02197 Corylus avellana HOM05D005339 ORTHO05D006561 9.7e-136 487.3 337 77.7
ECA246G3996 Erigeron canadensis HOM05D005339 ORTHO05D006561 2.2e-135 486.1 330 85.8
Lj9C389T6 Lonicera japonica HOM05D005339 ORTHO05D006561 8.2e-135 484.2 377 75.3
SGA_v2.0_scaffold58G20457 Striga asiatica HOM05D005339 ORTHO05D006561 8.2e-135 484.2 359 78.6
A09p58500 Brassica napus HOM05D005339 ORTHO05D006561 1.1e-134 483.8 346 81.2
C08p41800 Brassica napus HOM05D005339 ORTHO05D006561 1.8e-134 483.0 347 80.1
FvH4_1g25110 Fragaria vesca HOM05D005339 ORTHO05D006561 1.8e-134 483.0 337 81.0
Lalb_Chr23g0275171 Lupinus albus HOM05D005339 ORTHO05D006561 1.2e-133 480.3 321 84.7
BolC8t51743H Brassica oleracea HOM05D005339 ORTHO05D006561 2.0e-133 479.6 347 79.8
Lj4g0026543 Lotus japonicus HOM05D005339 ORTHO05D006561 3.5e-133 478.8 321 84.4
Oeu055639.3 Olea europaea HOM05D005339 ORTHO05D006561 3.5e-133 478.8 337 81.9
Pp3c17_13560 Physcomitrium patens HOM05D005339 ORTHO05D006561 4.5e-133 478.4 340 78.5
AUR62010093 Chenopodium quinoa HOM05D005339 ORTHO05D006561 1.0e-132 477.2 337 78.9
LjContig00310g0009118 Lotus japonicus HOM05D005339 ORTHO05D006561 1.0e-132 477.2 338 81.4
BcaC07g41172 Brassica carinata HOM05D005339 ORTHO05D006561 2.2e-132 476.1 331 82.2
unitig_744.g24266 Utricularia gibba HOM05D005339 ORTHO05D006561 2.9e-132 475.7 352 77.8
Dinv41975 Davidia involucrata HOM05D005339 ORTHO05D006561 5.0e-132 474.9 337 81.9
Mapoly0015s0022 Marchantia polymorpha HOM05D005339 ORTHO05D006561 2.1e-130 469.5 337 75.1
SMO117G0089 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 8.0e-130 467.6 337 78.3
BraA09t41237Z Brassica rapa HOM05D005339 ORTHO05D006561 1.4e-129 466.8 367 75.7
SalBow6G1349 Salvia bowleyana HOM05D005339 ORTHO05D006561 3.0e-129 465.7 349 77.7
AagrBONN_evm.TU.Sc2ySwM_344.4430 Anthoceros agrestis HOM05D005339 ORTHO05D006561 1.5e-128 463.4 337 77.7
FAN23G1071 Fragaria x ananassa HOM05D005339 ORTHO05D006561 2.6e-128 462.6 337 79.5
Ca_17265_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.8e-127 459.1 325 81.5
Ca_17286_v3 Cicer arietinum L. HOM05D005339 ORTHO05D006561 2.8e-127 459.1 325 81.5
Ah.01g009160 Amaranthus hybridus HOM05D005339 ORTHO05D006561 3.1e-126 455.7 337 76.6
FAN28G0542 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-125 453.4 365 73.7
FAN28G2786 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.6e-125 453.4 365 73.7
A04p15920 Brassica napus HOM05D005339 ORTHO05D006561 1.6e-122 443.4 337 77.7
TAR376G0223 Trochodendron aralioides HOM05D005339 ORTHO05D006561 3.6e-122 442.2 305 83.9
AUR62013089 Chenopodium quinoa HOM05D005339 ORTHO05D006561 2.6e-120 436.0 336 74.4
TPR.G17076 Trifolium pratense HOM05D005339 ORTHO05D006561 4.0e-113 412.1 284 83.1
BraA04t17225Z Brassica rapa HOM05D005339 ORTHO05D006561 1.5e-112 410.2 516 53.9
Lsat_1_v5_gn_3_45301 Lactuca sativa HOM05D005339 ORTHO05D006561 4.4e-112 408.7 334 75.1
Manes.11G090000 Manihot esculenta HOM05D005339 ORTHO05D006561 1.3e-111 407.1 274 87.2
EL10Ac9g21438 Beta vulgaris HOM05D005339 ORTHO05D006561 1.7e-111 406.8 352 69.0
Sc08g0003210 Simmondsia chinensis HOM05D005339 ORTHO05D006561 1.7e-108 396.7 225 85.8
Cpa.g.sc37.191 Carica papaya HOM05D005339 ORTHO05D006561 8.3e-103 377.9 321 73.5
FAN19G3054 Fragaria x ananassa HOM05D005339 ORTHO05D006561 1.3e-100 370.5 339 69.6
MELO3C020783.2 Cucumis melo HOM05D005339 ORTHO05D006561 1.2e-98 364.0 255 85.5
COL.COLO4_17257 Corchorus olitorius HOM05D005339 ORTHO05D003646 4.0e-97 359.0 324 70.7
Pp3c2_11550 Physcomitrium patens HOM05D005339 ORTHO05D006561 9.5e-91 337.8 277 72.6
FAN26G3137 Fragaria x ananassa HOM05D005339 ORTHO05D006561 3.6e-90 335.9 337 63.5
HPP92_028582 Vanilla planifolia HOM05D005339 ORTHO05D006561 4.9e-87 325.5 337 62.9
Cre07.g341300 Chlamydomonas reinhardtii HOM05D005339 ORTHO05D006561 2.5e-83 313.2 381 47.0
MCO15G465 Micromonas commoda HOM05D005339 ORTHO05D006561 5.4e-78 295.4 330 52.1
VMungo0251G1189 Vigna mungo HOM05D005339 ORTHO05D006561 3.3e-75 286.2 147 92.5
QL11p047601 Quercus lobata HOM05D005339 ORTHO05D006561 1.1e-67 261.2 183 74.3
SEGI_00782 Sequoiadendron giganteum HOM05D005339 ORTHO05D006561 9.3e-62 241.5 211 73.5
PRCOL_00006995 Prasinoderma coloniale HOM05D005339 ORTHO05D006561 1.1e-59 234.6 326 45.1
CBR_g47091 Chara braunii HOM05D005339 ORTHO05D006561 2.4e-49 200.3 116 84.5
CARHR112000 Cardamine hirsuta HOM05D005339 ORTHO05D006561 9.0e-49 198.4 165 70.9
CSS0019608 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 9.0e-41 171.8 84 91.7
CSS0027179 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.1e-38 164.9 91 91.2
VMungo0251G1261 Vigna mungo HOM05D005339 ORTHO05D006561 1.4e-33 147.9 89 86.5
Actinidia00595 Actinidia chinensis HOM05D005339 ORTHO05D006561 1.2e-32 144.8 89 83.1
TPR.G35331 Trifolium pratense HOM05D005339 ORTHO05D006561 1.0e-20 105.1 55 92.7
Phvul.002G320400 Phaseolus vulgaris HOM05D005339 ORTHO05D006561 3.3e-19 100.1 64 84.4
MCO03G074 Micromonas commoda HOM05D005339 ORTHO05D006561 3.2e-14 83.6 203 27.6
CSS0035622 Camellia sinensis var. sinensis HOM05D005339 ORTHO05D006561 1.2e-13 81.6 84 78.6
Cfa025584 Carpinus fangiana HOM05D005339 ORTHO05D006561 1.6e-13 81.3 266 27.8
SMO274G0062 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.7e-13 79.7 64 62.5
RcHm_v2.0_Chr5g0045021 Rosa chinensis HOM05D005339 ORTHO05D006561 2.6e-11 73.9 38 84.2
TPR.G17724 Trifolium pratense HOM05D005339 ORTHO05D006561 5.7e-11 72.8 41 87.8
SMO301G0014 Selaginella moellendorffii HOM05D005339 ORTHO05D006561 4.8e-10 69.7 54 64.8
Actinidia00596 Actinidia chinensis HOM05D003396 ORTHO05D003646 1.8e-09 67.8 45 71.1
Migut.O00339 Erythranthe guttata HOM05D005339 ORTHO05D006561 4.1e-09 66.6 30 93.3


User provided reference genes

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