Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.06G074900 Carya illinoinensis HOM05D005206 ORTHO05D006219 8.7e-229 796.6 392 100.0
QL03p062489 Quercus lobata HOM05D005206 ORTHO05D006219 6.5e-184 647.5 347 89.6
Haze_12137 Corylus avellana HOM05D005206 ORTHO05D006219 4.2e-183 644.8 389 82.8
Dinv30996 Davidia involucrata HOM05D005206 ORTHO05D006219 4.0e-181 638.3 389 79.2
Dinv31107 Davidia involucrata HOM05D005206 ORTHO05D006219 4.0e-181 638.3 389 79.2
GSVIVG01020174001 Vitis vinifera HOM05D005206 ORTHO05D006219 8.8e-181 637.1 397 78.3
Cfa009102 Carpinus fangiana HOM05D005206 ORTHO05D006219 1.2e-180 636.7 389 82.3
Atru.chr11.1960 Acer truncatum HOM05D005206 ORTHO05D006219 3.7e-179 631.7 391 78.8
Potri.010G094800 Populus trichocarpa HOM05D005206 ORTHO05D006219 3.1e-178 628.6 387 79.1
TAR371G0117 Trochodendron aralioides HOM05D005206 ORTHO05D006219 4.1e-178 628.2 390 79.5
Eucgr.B02561 Eucalyptus grandis HOM05D005206 ORTHO05D006219 7.0e-178 627.5 387 78.8
Actinidia15006 Actinidia chinensis HOM05D005206 ORTHO05D006219 1.1e-175 620.2 386 77.5
Ciclev10031184m.g Citrus clementina HOM05D005206 ORTHO05D006219 5.6e-175 617.8 389 77.6
Hma1.2p1_1049F.1_g251730 Hydrangea macrophylla HOM05D005206 ORTHO05D006219 2.1e-174 615.9 383 79.1
Rhsim12G0124400 Rhododendron simsii HOM05D005206 ORTHO05D006219 8.0e-174 614.0 370 80.5
Gohir.A01G141200 Gossypium hirsutum HOM05D005206 ORTHO05D006219 1.0e-173 613.6 391 77.0
Nitab4.5_0000257g0230 Nicotiana tabacum HOM05D005206 ORTHO05D006219 1.0e-173 613.6 373 79.6
Thecc.02G242400 Theobroma cacao HOM05D005206 ORTHO05D006219 1.8e-173 612.8 391 77.5
Gorai.002G164200 Gossypium raimondii HOM05D005206 ORTHO05D006219 8.9e-173 610.5 391 76.7
CsaV3_5G031880 Cucumis sativus L. HOM05D005206 ORTHO05D006219 1.2e-172 610.1 384 77.3
FvH4_4g35030 Fragaria vesca HOM05D005206 ORTHO05D006219 2.0e-172 609.4 361 80.6
RcHm_v2.0_Chr4g0444551 Rosa chinensis HOM05D005206 ORTHO05D006219 2.0e-172 609.4 361 80.3
CSS0048376 Camellia sinensis var. sinensis HOM05D005206 ORTHO05D006219 4.4e-172 608.2 380 76.6
Nitab4.5_0005722g0070 Nicotiana tabacum HOM05D005206 ORTHO05D006219 4.4e-172 608.2 357 80.7
Sabra10G0067100 Salix brachista HOM05D005206 ORTHO05D006219 1.3e-171 606.7 421 72.2
SalBow2G2775 Salvia bowleyana HOM05D005206 ORTHO05D006219 1.7e-171 606.3 370 80.3
Duzib248G0782 Durio zibethinus HOM05D005206 ORTHO05D006219 2.9e-171 605.5 347 83.3
Sed0001006 Sechium edule HOM05D005206 ORTHO05D006219 2.9e-171 605.5 387 77.0
Manes.01G196700 Manihot esculenta HOM05D005206 ORTHO05D006219 6.4e-171 604.4 383 76.8
CAN.G1160.5 Capsicum annuum HOM05D005206 ORTHO05D006219 1.4e-170 603.2 383 76.2
Migut.L01447 Erythranthe guttata HOM05D005206 ORTHO05D006219 1.4e-170 603.2 367 81.2
Lj2g0017178 Lotus japonicus HOM05D005206 ORTHO05D006219 1.4e-170 603.2 390 76.2
Sc11g0001370 Simmondsia chinensis HOM05D005206 ORTHO05D006219 4.1e-170 601.7 377 76.9
RcHm_v2.0_Chr4g0444541 Rosa chinensis HOM05D005206 ORTHO05D006219 5.4e-170 601.3 362 81.5
arahy.Tifrunner.gnm1.ann1.05N2IU Arachis hypogaea HOM05D005206 ORTHO05D006219 9.2e-170 600.5 391 74.7
Glyma.02G065600 Glycine max HOM05D005206 ORTHO05D006219 2.7e-169 599.0 391 74.9
THA.LOC104816736 Tarenaya hassleriana HOM05D005206 ORTHO05D006219 1.0e-168 597.0 365 78.4
MSTRG.7873 Avicennia marina HOM05D005206 ORTHO05D006219 1.3e-168 596.7 356 80.1
Phvul.004G071000 Phaseolus vulgaris HOM05D005206 ORTHO05D006219 1.3e-168 596.7 393 74.0
Solyc05g006120.3 Solanum lycopersicum HOM05D005206 ORTHO05D006219 1.3e-168 596.7 361 79.8
vmacro16280 Vaccinium macrocarpon HOM05D005206 ORTHO05D006219 1.3e-168 596.7 386 75.6
Lalb_Chr09g0326511 Lupinus albus HOM05D005206 ORTHO05D006219 6.6e-168 594.3 391 74.9
Sopen05g002140 Solanum pennellii HOM05D005206 ORTHO05D006219 6.6e-168 594.3 373 77.5
Nn4g22885 Nelumbo nucifera HOM05D005206 ORTHO05D006219 1.9e-167 592.8 361 79.8
CANSAT56G0905 Cannabis sativa HOM05D005206 ORTHO05D006219 2.5e-167 592.4 340 82.4
Lj3A1048T22 Lonicera japonica HOM05D005206 ORTHO05D006219 2.5e-167 592.4 389 75.8
TWI36G1721 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 4.3e-167 591.7 389 74.6
Sp1g09150 Schrenkiella parvula HOM05D005206 ORTHO05D006219 1.6e-166 589.7 391 73.9
arahy.Tifrunner.gnm1.ann1.U6W7RM Arachis hypogaea HOM05D005206 ORTHO05D006219 6.2e-166 587.8 371 75.7
DCAR_007103 Daucus carota HOM05D005206 ORTHO05D006219 1.8e-165 586.3 390 74.1
HanXRQChr16g0527551 Helianthus annuus HOM05D005206 ORTHO05D006219 3.1e-165 585.5 371 76.5
CARHR010660 Cardamine hirsuta HOM05D005206 ORTHO05D006219 4.0e-165 585.1 370 76.8
Thhalv10009477m.g Eutrema salsugineum HOM05D005206 ORTHO05D006219 5.2e-165 584.7 375 74.4
PSO063G3522 Papaver somniferum HOM05D005206 ORTHO05D006219 1.2e-164 583.6 392 74.0
PSO832G4147 Papaver somniferum HOM05D005206 ORTHO05D006219 1.5e-164 583.2 348 79.6
Aa31LG1G4440 Aethionema arabicum HOM05D005206 ORTHO05D006219 2.6e-164 582.4 389 72.5
Medtr7g039450 Medicago truncatula HOM05D005206 ORTHO05D006219 2.6e-164 582.4 389 72.2
FvH4_4g35010 Fragaria vesca HOM05D005206 ORTHO05D006219 3.4e-164 582.0 362 78.5
Ah.03g132350 Amaranthus hybridus HOM05D005206 ORTHO05D006219 4.4e-164 581.6 389 72.2
Lsat_1_v5_gn_9_83200 Lactuca sativa HOM05D005206 ORTHO05D006219 5.8e-164 581.3 365 77.3
Hund25315 Selenicereus undatus HOM05D005206 ORTHO05D006219 7.5e-164 580.9 390 72.8
BraA08t35305Z Brassica rapa HOM05D005206 ORTHO05D006219 9.8e-164 580.5 366 76.5
BcaC07g38608 Brassica carinata HOM05D005206 ORTHO05D006219 2.2e-163 579.3 337 81.0
AL1G21320 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 3.7e-163 578.6 379 74.4
Carub.0001s0995 Capsella rubella HOM05D005206 ORTHO05D006219 4.9e-163 578.2 387 72.9
Medtr5g040170 Medicago truncatula HOM05D005206 ORTHO05D006219 4.9e-163 578.2 389 71.7
Aqoxy3G03082 Aquilegia oxysepala HOM05D005206 ORTHO05D006219 1.4e-162 576.6 388 71.9
PGR119G2380 Punica granatum HOM05D005206 ORTHO05D006219 3.2e-162 575.5 390 74.1
SGA_v2.0_scaffold166G38340 Striga asiatica HOM05D005206 ORTHO05D006219 4.1e-162 575.1 460 65.4
ATR1149G100 Amborella trichopoda HOM05D005206 ORTHO05D006219 1.6e-161 573.2 370 74.9
BcaC07g38570 Brassica carinata HOM05D005206 ORTHO05D006219 1.6e-161 573.2 385 72.7
C08p13780 Brassica napus HOM05D005206 ORTHO05D006219 1.6e-161 573.2 385 72.7
Gohir.D01G132600 Gossypium hirsutum HOM05D005206 ORTHO05D006219 3.5e-161 572.0 349 79.1
C08p13760 Brassica napus HOM05D005206 ORTHO05D006219 1.7e-160 569.7 392 71.9
BolC8t49011H Brassica oleracea HOM05D005206 ORTHO05D006219 1.7e-160 569.7 392 71.9
A08p33920 Brassica napus HOM05D005206 ORTHO05D006219 3.9e-160 568.5 390 71.8
MBI15_g34233_MAGBIO Magnolia biondii HOM05D005206 ORTHO05D006219 3.9e-160 568.5 381 73.0
unitig_748.g7742 Utricularia gibba HOM05D005206 ORTHO05D006219 1.5e-159 566.6 383 73.1
EL10Ac8g20565 Beta vulgaris HOM05D005206 ORTHO05D006219 1.2e-158 563.5 391 71.1
Os06g0237200 Oryza sativa ssp. japonica HOM05D005206 ORTHO05D006219 1.4e-157 560.1 377 71.9
Zm00001eb371940 Zea mays HOM05D005206 ORTHO05D006219 8.9e-157 557.4 336 78.3
Peaxi162Scf00421g00833 Petunia axillaris HOM05D005206 ORTHO05D006219 1.2e-153 547.0 385 72.2
AUR62039408 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.0e-152 543.9 401 67.6
ECA236G3606 Erigeron canadensis HOM05D005206 ORTHO05D006219 5.1e-152 541.6 355 74.4
SEGI_33189 Sequoiadendron giganteum HOM05D005206 ORTHO05D006219 3.5e-145 518.8 356 68.3
MELO3C034123.2 Cucumis melo HOM05D005206 ORTHO05D006219 6.0e-145 518.1 424 64.9
Ca_18093_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 2.5e-143 512.7 322 75.5
TPR.G13491 Trifolium pratense HOM05D005206 ORTHO05D006219 6.0e-137 491.5 336 70.8
Hund05954 Selenicereus undatus HOM05D005206 ORTHO05D006219 7.8e-137 491.1 391 64.5
SalBow2G3534 Salvia bowleyana HOM05D005206 ORTHO05D006219 2.3e-136 489.6 392 66.1
TWI36G0196 Tripterygium wilfordii HOM05D005206 ORTHO05D006219 3.9e-136 488.8 328 73.2
COL.COLO4_38096 Corchorus olitorius HOM05D005206 ORTHO05D006219 1.5e-135 486.9 333 72.4
MD16G1086700 Malus domestica HOM05D005206 ORTHO05D006219 2.5e-135 486.1 276 83.0
ClCG05G025020 Citrullus lanatus HOM05D005206 ORTHO05D006219 1.6e-134 483.4 388 65.2
AT1G10520 Arabidopsis thaliana HOM05D005206 ORTHO05D006219 2.0e-132 476.5 318 72.0
AL1G24280 Arabidopsis lyrata HOM05D005206 ORTHO05D006219 1.7e-131 473.4 275 80.0
FAN12G3755 Fragaria x ananassa HOM05D005206 ORTHO05D006219 1.7e-131 473.4 361 67.0
AagrBONN_evm.TU.Sc2ySwM_344.2272 Anthoceros agrestis HOM05D005206 ORTHO05D006219 2.8e-126 456.1 386 57.3
Mapoly0057s0101 Marchantia polymorpha HOM05D005206 ORTHO05D006219 1.2e-124 450.7 343 63.6
FAN22G1639 Fragaria x ananassa HOM05D005206 ORTHO05D006219 7.6e-124 448.0 361 64.3
Psat2g114280 Pisum sativum HOM05D005206 ORTHO05D006219 2.9e-123 446.0 311 69.1
FAN12G3075 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.9e-120 435.6 378 61.6
Pp3c15_19010 Physcomitrium patens HOM05D005206 ORTHO05D006219 5.1e-120 435.3 339 60.5
SMO353G0008 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 5.3e-117 425.2 342 60.2
QL03p062590 Quercus lobata HOM05D005206 ORTHO05D006219 1.6e-113 413.7 331 66.8
CBR_g3482 Chara braunii HOM05D005206 ORTHO05D006219 3.3e-111 406.0 321 58.6
Prupe.1G259900 Prunus persica HOM05D005206 ORTHO05D006219 5.7e-111 405.2 243 78.6
CDE07G1306 Ceratophyllum demersum HOM05D005206 ORTHO05D006219 7.2e-98 361.7 375 52.5
AUR62026580 Chenopodium quinoa HOM05D005206 ORTHO05D006219 2.1e-97 360.1 216 74.5
PGSC0003DMG400015600 Solanum tuberosum HOM05D005206 ORTHO05D006219 5.5e-90 335.5 186 84.4
FAN07G1959 Fragaria x ananassa HOM05D005206 ORTHO05D006219 6.1e-89 332.0 270 63.3
Cc11_g14240 Coffea canephora HOM05D005206 ORTHO05D006219 1.4e-88 330.9 183 84.7
Oeu025446.1 Olea europaea HOM05D005206 ORTHO05D006219 3.6e-81 306.2 225 70.2
Mapoly0078s0005 Marchantia polymorpha HOM05D005206 ORTHO05D006219 4.0e-80 302.8 332 45.5
CBR_g48616 Chara braunii HOM05D005206 ORTHO05D006219 1.7e-78 297.4 407 42.3
HPP92_017072 Vanilla planifolia HOM05D005206 ORTHO05D006219 5.5e-74 282.3 208 65.4
Cc11_g14230 Coffea canephora HOM05D005206 ORTHO05D006219 1.2e-73 281.2 198 72.2
SHI08107 Sapria himalayana HOM05D005206 ORTHO05D006219 5.2e-72 275.8 219 66.7
AagrBONN_evm.TU.Sc2ySwM_362.251 Anthoceros agrestis HOM05D005206 ORTHO05D006219 6.3e-70 268.9 291 45.7
SMO235G0045 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 2.4e-69 266.9 312 43.3
HPP92_017067 Vanilla planifolia HOM05D005206 ORTHO05D006219 6.5e-67 258.8 208 64.9
FAN17G0295 Fragaria x ananassa HOM05D005206 ORTHO05D006219 3.2e-66 256.5 203 67.0
SMO347G0124 Selaginella moellendorffii HOM05D005206 ORTHO05D006219 1.5e-63 247.7 312 41.7
Cpa.g.sc5.345 Carica papaya HOM05D005206 ORTHO05D006219 4.4e-63 246.1 140 80.7
Cpa.g.sc5.348 Carica papaya HOM05D005206 ORTHO05D006219 5.2e-56 222.6 112 91.1
Cfa026399 Carpinus fangiana HOM05D005206 ORTHO05D006219 5.0e-43 179.5 351 32.5
HPP92_017071 Vanilla planifolia HOM05D005206 ORTHO05D006219 8.3e-38 162.2 131 64.9
VMungo0464G2026 Vigna mungo HOM05D005206 ORTHO05D006219 2.4e-37 160.6 93 80.6
PRCOL_00003765 Prasinoderma coloniale HOM05D005206 ORTHO05D006219 1.2e-36 158.3 357 25.2
MCO16G526 Micromonas commoda HOM05D005206 ORTHO05D006219 1.9e-34 151.0 422 28.0
SHI08109 Sapria himalayana HOM05D005206 ORTHO05D006219 4.3e-34 149.8 122 59.8
FvH4_6g23350 Fragaria vesca HOM05D005206 ORTHO05D006219 1.3e-30 138.3 82 76.8
MD16G1086600 Malus domestica HOM05D005206 ORTHO05D006219 4.6e-28 129.8 125 60.0
Cpa.g.sc5.344 Carica papaya HOM05D005206 ORTHO05D006219 1.5e-26 124.8 123 59.3
FvH4_5g07370 Fragaria vesca HOM05D003058 ORTHO05D003464 7.3e-26 122.5 99 64.6
AUR62026578 Chenopodium quinoa HOM05D005206 ORTHO05D006219 1.8e-24 117.9 123 55.3
VMungo0464G1917 Vigna mungo HOM05D005206 ORTHO05D006219 1.1e-21 108.6 122 53.3
RcHm_v2.0_Chr3g0484611 Rosa chinensis HOM05D005206 ORTHO05D006219 2.3e-19 100.9 62 74.2
Cre17.g716101 Chlamydomonas reinhardtii HOM05D005206 ORTHO05D006219 3.6e-17 93.6 215 31.6
Ca_04200_v3 Cicer arietinum L. HOM05D005206 ORTHO05D006219 1.7e-14 84.7 55 70.9
HPP92_017068 Vanilla planifolia HOM05D005206 ORTHO05D006219 7.9e-12 75.9 60 55.0
RcHm_v2.0_Chr4g0401081 Rosa chinensis HOM05D005206 ORTHO05D006219 3.4e-07 60.5 45 60.0
MCO05G731 Micromonas commoda HOM05D037369 ORTHO05D044191 6.4e-06 56.2 167 28.1


User provided reference genes

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